Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0397391 Rosa chinensis HOM05D008315 ORTHO05D009452 7.1e-122 440.7 228 100.0
RcHm_v2.0_Chr2g0145131 Rosa chinensis HOM05D008315 ORTHO05D009452 1.5e-116 422.9 228 96.9
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.3e-103 378.3 228 84.2
FAN08G1914 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.4e-101 373.2 228 83.8
FAN10G3967 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.1e-93 345.5 219 81.3
FAN24G1602 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.7e-91 339.7 211 82.9
RcHm_v2.0_Chr4g0393741 Rosa chinensis HOM05D008315 ORTHO05D009452 1.9e-87 326.2 229 74.7
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 3.2e-82 308.9 190 83.7
FAN08G3171 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.6e-81 305.1 194 82.5
FAN22G1440 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.8e-77 293.1 228 70.6
FvH4_2g21543 Fragaria vesca HOM05D008315 ORTHO05D009452 1.3e-67 260.4 168 82.7
FAN20G0527 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.3e-27 127.5 212 39.6
RcHm_v2.0_Chr5g0015951 Rosa chinensis HOM05D008315 ORTHO05D009452 1.3e-27 127.5 260 37.3
RcHm_v2.0_Chr5g0016651 Rosa chinensis HOM05D008315 ORTHO05D009452 1.7e-27 127.1 65 95.4
FvH4_2g00150 Fragaria vesca HOM05D008315 ORTHO05D009452 1.9e-26 123.6 222 38.7
RcHm_v2.0_Chr2g0095801 Rosa chinensis HOM05D008315 ORTHO05D009452 5.6e-26 122.1 159 45.3
FAN08G0992 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.1e-25 118.6 242 35.5
FvH4_6g11351 Fragaria vesca HOM05D008315 ORTHO05D009452 1.0e-24 117.9 202 39.1
FAN21G3482 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.4e-24 117.5 219 36.5
FAN04G1611 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.4e-23 112.8 246 36.2
FAN20G0161 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.4e-21 105.5 244 34.0
FAN22G1488 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.0e-20 103.6 151 42.4
FAN24G3308 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.6e-19 98.6 178 40.4
FAN15G1960 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.1e-18 97.8 238 32.4
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 1.5e-18 97.4 233 33.0
FvH4_4g00092 Fragaria vesca HOM05D008315 ORTHO05D009452 1.2e-17 94.4 217 34.1
FAN08G2751 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.1e-17 93.6 176 37.5
MD03G1101500 Malus domestica HOM05D008315 ORTHO05D009452 4.0e-16 89.4 123 48.0
RcHm_v2.0_Chr7g0237841 Rosa chinensis HOM05D009706 ORTHO05D009452 3.4e-15 86.3 185 36.2
FAN17G0399 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.5e-15 85.1 155 36.8
FAN25G1520 Fragaria x ananassa HOM05D008315 ORTHO05D009452 8.3e-14 81.6 183 34.4
FAN14G0707 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.1e-13 81.3 173 35.8
FAN05G2530 Fragaria x ananassa HOM05D009706 ORTHO05D009452 4.1e-13 79.3 178 32.0
FAN02G2771 Fragaria x ananassa HOM05D009706 ORTHO05D009452 9.2e-13 78.2 178 31.5
FvH4_3g32800 Fragaria vesca HOM05D009706 ORTHO05D009452 2.1e-12 77.0 178 31.5
FAN27G0213 Fragaria x ananassa HOM05D009706 ORTHO05D009452 6.0e-12 75.5 127 37.0
FAN05G5299 Fragaria x ananassa HOM05D009706 ORTHO05D009452 7.8e-12 75.1 178 30.9
FAN05G1217 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.0e-11 74.7 88 42.0
RcHm_v2.0_Chr2g0111771 Rosa chinensis HOM05D012440 ORTHO05D009452 1.5e-10 70.9 194 28.9
RcHm_v2.0_Chr3g0468771 Rosa chinensis HOM05D009706 ORTHO05D009452 3.3e-10 69.7 133 36.8
RcHm_v2.0_Chr4g0435991 Rosa chinensis HOM05D009706 ORTHO05D009452 3.3e-10 69.7 133 36.8
RcHm_v2.0_Chr2g0143311 Rosa chinensis HOM05D012440 ORTHO05D009452 3.6e-09 66.2 194 28.4
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 4.7e-09 65.9 98 39.8
MD02G1315300 Malus domestica HOM05D008315 ORTHO05D009452 6.2e-09 65.5 152 32.2
RcHm_v2.0_Chr6g0274501 Rosa chinensis HOM05D008315 ORTHO05D009452 1.1e-08 64.7 202 30.2
FAN01G0827 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.4e-08 64.3 217 27.2
FAN03G0559 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.8e-08 63.9 105 40.0
RcHm_v2.0_Chr7g0184951 Rosa chinensis HOM05D008315 ORTHO05D009452 2.3e-08 63.5 151 31.8
FAN03G2326 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.0e-07 60.5 251 27.1
FAN05G0389 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.0e-07 60.5 187 29.4
FAN09G3904 Fragaria x ananassa HOM05D009706 ORTHO05D009452 1.3e-06 57.8 157 35.0
FAN19G2826 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.7e-06 56.2 151 31.1
FAN21G3607 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.7e-06 56.2 151 31.1
FAN06G4265 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.9e-06 55.8 151 31.1
TAR633G1500 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.4e-06 55.1 101 34.7


User provided reference genes

Program Settings