Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0397151 Rosa chinensis HOM05D000406 ORTHO05D344145 1.5e-29 132.1 65 100.0
RcHm_v2.0_Chr1g0325201 Rosa chinensis HOM05D000406 ORTHO05D341103 9.0e-22 106.3 65 86.2
FvH4_3g37720 Fragaria vesca HOM05D000406 ORTHO05D002714 1.2e-10 69.3 43 81.4
FAN11G1282 Fragaria x ananassa HOM05D000406 ORTHO05D002714 1.2e-10 69.3 43 81.4
FAN16G1720 Fragaria x ananassa HOM05D000406 ORTHO05D002714 1.2e-10 69.3 43 81.4
FAN25G2210 Fragaria x ananassa HOM05D000406 ORTHO05D002714 1.2e-10 69.3 43 81.4
MD11G1082900 Malus domestica HOM05D000406 ORTHO05D002714 1.2e-10 69.3 43 81.4
Prupe.6G063200 Prunus persica HOM05D000406 ORTHO05D002714 1.2e-10 69.3 43 81.4
RcHm_v2.0_Chr5g0067991 Rosa chinensis HOM05D000406 ORTHO05D002714 1.2e-10 69.3 43 81.4
RcHm_v2.0_Chr6g0266461 Rosa chinensis HOM05D000406 ORTHO05D347914 1.6e-10 68.9 38 89.5
FAN21G2464 Fragaria x ananassa HOM05D000406 ORTHO05D002714 2.7e-10 68.2 43 79.1
Cpa.g.sc112.80 Carica papaya HOM05D000406 ORTHO05D002714 1.0e-09 66.2 43 74.4
MD03G1078200 Malus domestica HOM05D000406 ORTHO05D002714 5.1e-09 63.9 46 76.1
Aa31LG1G11680 Aethionema arabicum HOM05D000406 ORTHO05D002714 6.7e-09 63.5 43 72.1
BcaB08g36301 Brassica carinata HOM05D000406 ORTHO05D002714 6.7e-09 63.5 43 69.8
A10p16230 Brassica napus HOM05D000406 ORTHO05D002714 6.7e-09 63.5 43 69.8
C09p51170 Brassica napus HOM05D000406 ORTHO05D002714 6.7e-09 63.5 43 69.8
BolC9t57979H Brassica oleracea HOM05D000406 ORTHO05D002714 6.7e-09 63.5 43 69.8
BraA10t43704Z Brassica rapa HOM05D000406 ORTHO05D002714 6.7e-09 63.5 43 69.8
CARHR285200 Cardamine hirsuta HOM05D000406 ORTHO05D002714 6.7e-09 63.5 43 72.1
Thhalv10014206m.g Eutrema salsugineum HOM05D000406 ORTHO05D002714 6.7e-09 63.5 43 72.1
CANSAT54G1992 Cannabis sativa HOM05D000406 ORTHO05D002714 1.1e-08 62.8 43 72.1
AL8G35350 Arabidopsis lyrata HOM05D000406 ORTHO05D002714 1.9e-08 62.0 43 69.8
AT5G58970 Arabidopsis thaliana HOM05D000406 ORTHO05D002714 1.9e-08 62.0 43 69.8
Carub.0008s1961 Capsella rubella HOM05D000406 ORTHO05D002714 1.9e-08 62.0 43 67.4
Sp6g20670 Schrenkiella parvula HOM05D000406 ORTHO05D002714 1.9e-08 62.0 43 69.8
Manes.02G122900 Manihot esculenta HOM05D000406 ORTHO05D002714 2.5e-08 61.6 43 69.8
THA.LOC104814900 Tarenaya hassleriana HOM05D000406 ORTHO05D002714 2.5e-08 61.6 43 67.4
Sabra16G0150500 Salix brachista HOM05D000406 ORTHO05D002714 3.3e-08 61.2 43 67.4
THA.LOC104799409 Tarenaya hassleriana HOM05D000406 ORTHO05D002714 3.3e-08 61.2 43 67.4
Eucgr.B02282 Eucalyptus grandis HOM05D000406 ORTHO05D002714 5.7e-08 60.5 42 69.0
Potri.001G247800 Populus trichocarpa HOM05D000406 ORTHO05D002714 5.7e-08 60.5 51 60.8
CiPaw.14G062500 Carya illinoinensis HOM05D000406 ORTHO05D002714 7.4e-08 60.1 43 67.4
Lsat_1_v5_gn_9_25480 Lactuca sativa HOM05D000406 ORTHO05D002714 9.7e-08 59.7 43 69.8
BcaB05g22466 Brassica carinata HOM05D000406 ORTHO05D002714 1.3e-07 59.3 43 67.4
QL01p027412 Quercus lobata HOM05D000406 ORTHO05D002714 2.2e-07 58.5 43 67.4
QL93p2004_0037 Quercus lobata HOM05D000406 ORTHO05D002714 2.2e-07 58.5 43 67.4
TWI75G1820 Tripterygium wilfordii HOM05D000406 ORTHO05D002714 2.2e-07 58.5 43 67.4
Lalb_Chr20g0115121 Lupinus albus HOM05D000406 ORTHO05D002714 2.8e-07 58.2 52 59.6
Cfa011631 Carpinus fangiana HOM05D000406 ORTHO05D002714 8.2e-07 56.6 43 62.8
Ciclev10028916m.g Citrus clementina HOM05D000406 ORTHO05D002714 8.2e-07 56.6 43 67.4
Hund18868 Selenicereus undatus HOM05D000406 ORTHO05D002714 8.2e-07 56.6 43 67.4
Sc12g0001010 Simmondsia chinensis HOM05D000406 ORTHO05D002714 1.1e-06 56.2 43 67.4
TWI31G0919 Tripterygium wilfordii HOM05D000406 ORTHO05D002714 1.1e-06 56.2 43 65.1
Haze_24236 Corylus avellana HOM05D000406 ORTHO05D002714 4.1e-06 54.3 43 60.5
Dinv14477 Davidia involucrata HOM05D000406 ORTHO05D002714 5.3e-06 53.9 43 65.1
Atru.chr3.4054 Acer truncatum HOM05D000406 ORTHO05D002714 6.9e-06 53.5 43 65.1


User provided reference genes

Program Settings