Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1928.3 1005 100.0
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1759.2 1017 90.2
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1752.6 1028 89.2
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1749.6 1017 90.1
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1643.2 1043 84.2
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1458.7 1022 75.5
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1434.1 1021 74.8
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 0.0e+00 1216.1 708 90.0
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1214.1 1014 64.6
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1196.8 968 65.2
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1189.1 1063 61.1
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 0.0e+00 1155.2 1019 60.9
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1139.8 949 62.5
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1124.4 1035 59.4
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1110.5 1015 59.4
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1098.2 1016 58.8
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 0.0e+00 1089.7 1011 57.8
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1087.8 1024 58.3
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1086.2 1020 57.6
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.4e-311 1073.2 1022 57.7
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 5.7e-309 1064.3 1012 56.0
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 1.6e-303 1046.2 914 62.0
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 6.8e-302 1040.8 1017 56.2
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 2.6e-301 1038.9 1014 55.3
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 2.2e-300 1035.8 1014 55.2
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 3.7e-300 1035.0 1016 55.8
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 4.9e-300 1034.6 980 57.7
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 1.0e-297 1026.9 1065 54.4
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 1.7e-297 1026.2 982 55.8
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 3.3e-296 1021.9 1014 55.7
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 6.6e-289 997.7 1016 53.3
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 2.6e-285 985.7 1046 52.8
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 6.4e-284 981.1 892 58.7
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 2.8e-279 965.7 1019 51.8
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 1.8e-278 963.0 1075 51.7
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 2.4e-278 962.6 1021 51.9
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.5e-277 959.9 1024 52.0
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 3.8e-276 955.3 1012 51.1
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 3.9e-273 945.3 977 52.5
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 1.9e-272 943.0 1034 49.8
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 6.2e-271 937.9 1041 50.8
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 5.3e-270 934.9 1015 50.1
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 5.8e-269 931.4 1024 50.7
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 4.2e-267 925.2 903 55.4
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 5.4e-267 924.9 1013 50.4
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 1.2e-266 923.7 1002 51.2
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.6e-266 923.3 974 51.0
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 2.5e-264 916.0 993 50.7
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.4e-262 910.2 1054 48.1
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 3.4e-261 905.6 973 51.8
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 1.7e-260 903.3 981 50.7
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 6.4e-260 901.4 1005 49.5
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.4e-259 900.2 1018 50.3
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 7.9e-258 894.4 1022 49.1
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 7.4e-256 887.9 1017 48.6
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 4.0e-254 882.1 1020 47.5
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 6.9e-254 881.3 977 49.5
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 1.3e-252 877.1 913 52.1
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 2.9e-252 875.9 994 49.1
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 8.7e-249 864.4 913 51.4
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 2.8e-247 859.4 839 55.5
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 5.3e-246 855.1 976 49.9
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 2.9e-244 849.4 1025 47.8
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 2.5e-240 836.3 970 48.7
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.7e-239 833.6 1013 45.7
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 4.8e-239 832.0 1013 45.7
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 5.3e-238 828.6 1004 45.9
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.7e-236 823.5 1007 45.2
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 1.7e-236 823.5 1024 45.1
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.1e-235 820.8 1021 47.3
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.1e-235 820.8 1003 45.1
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 1.1e-235 820.8 909 50.7
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 7.2e-235 818.1 1002 45.0
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 6.1e-234 815.1 1002 44.3
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 8.8e-233 811.2 924 47.2
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.5e-232 810.4 1012 44.6
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 2.6e-232 809.7 1018 44.3
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 2.6e-232 809.7 1024 43.6
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 5.7e-232 808.5 951 48.2
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 2.6e-229 799.7 927 48.7
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 5.0e-228 795.4 893 48.5
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 3.2e-227 792.7 1016 44.5
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 2.7e-226 789.6 778 55.0
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 5.2e-225 785.4 918 47.6
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 1.5e-224 783.9 1033 43.4
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 4.4e-224 782.3 1004 43.5
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 1.2e-221 774.2 1043 45.3
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 4.4e-216 755.7 827 50.7
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 4.4e-216 755.7 1040 44.4
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 3.7e-215 752.7 1009 44.2
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 2.0e-208 730.3 665 58.2
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 4.4e-208 729.2 976 42.3
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 5.7e-200 702.2 918 43.6
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 2.4e-182 643.7 951 44.3
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 2.3e-177 627.1 1040 37.3
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 4.4e-176 622.9 680 49.7
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 8.1e-170 602.1 830 41.8
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 2.8e-162 577.0 1058 36.2
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 2.4e-153 547.4 901 39.3
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.3e-138 498.4 902 34.7
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.3e-132 478.4 1010 32.4
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 8.6e-63 246.5 998 23.8
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 6.4e-58 230.3 644 29.5
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 3.5e-56 224.6 280 41.8
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.2e-51 209.5 337 39.8
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 7.1e-49 200.3 665 26.9
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 8.7e-47 193.4 173 58.4
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 7.3e-38 163.7 178 53.4
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 1.0e-31 143.3 669 23.9
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 4.3e-22 111.3 136 41.9
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 7.6e-19 100.5 729 20.7
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.7e-18 99.4 422 24.2
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 1.8e-15 89.4 117 43.6
FAN04G1956 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.3e-14 84.7 50 86.0
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 7.9e-08 63.9 106 34.0
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 4.3e-06 58.2 80 40.0


User provided reference genes

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