Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396831 Rosa chinensis HOM05D008849 ORTHO05D010556 5.4e-77 290.8 136 100.0
FvH4_4g05650 Fragaria vesca HOM05D008849 ORTHO05D010556 4.6e-60 234.6 136 83.1
FAN17G1524 Fragaria x ananassa HOM05D008849 ORTHO05D010556 1.0e-59 233.4 136 83.1
CiPaw.02G127100 Carya illinoinensis HOM05D008849 ORTHO05D010556 5.6e-34 147.9 136 50.0
CiPaw.16G074900 Carya illinoinensis HOM05D008849 ORTHO05D010556 3.4e-31 138.7 136 47.1
Thecc.04G213000 Theobroma cacao HOM05D008849 ORTHO05D010556 2.9e-30 135.6 133 49.6
QL11p022534 Quercus lobata HOM05D008849 ORTHO05D010556 6.5e-30 134.4 129 47.3
Atru.chr4.1805 Acer truncatum HOM05D008849 ORTHO05D010556 4.2e-29 131.7 130 46.9
Potri.001G053200 Populus trichocarpa HOM05D008849 ORTHO05D010556 4.2e-29 131.7 132 45.5
Sabra03G0128300 Salix brachista HOM05D008849 ORTHO05D010556 5.5e-29 131.3 130 45.4
Gohir.A09G202100 Gossypium hirsutum HOM05D008849 ORTHO05D010556 7.1e-29 131.0 131 46.6
CiPaw.01G204700 Carya illinoinensis HOM05D008849 ORTHO05D010556 2.1e-28 129.4 131 42.7
Gohir.D09G196100 Gossypium hirsutum HOM05D008849 ORTHO05D010556 2.1e-28 129.4 131 45.8
Gorai.006G219500 Gossypium raimondii HOM05D008849 ORTHO05D010556 2.1e-28 129.4 131 45.8
Ciclev10007007m.g Citrus clementina HOM05D008849 ORTHO05D010556 2.7e-28 129.0 103 51.5
Potri.003G175000 Populus trichocarpa HOM05D008849 ORTHO05D010556 6.0e-28 127.9 132 46.2
Gohir.A10G120800 Gossypium hirsutum HOM05D008849 ORTHO05D010556 1.9e-26 122.9 132 43.9
Gorai.011G162700 Gossypium raimondii HOM05D008849 ORTHO05D010556 5.7e-26 121.3 132 43.2
Cfa014873 Carpinus fangiana HOM05D008849 ORTHO05D010556 8.2e-25 117.5 103 47.6
Gohir.D10G145500 Gossypium hirsutum HOM05D008849 ORTHO05D010556 3.4e-23 112.1 95 49.5
Potri.003G175100 Populus trichocarpa HOM05D008849 ORTHO05D010556 5.9e-23 111.3 133 40.6
COL.COLO4_26204 Corchorus olitorius HOM05D008849 ORTHO05D010556 5.0e-22 108.2 138 37.7
Eucgr.E01057 Eucalyptus grandis HOM05D008849 ORTHO05D010556 2.5e-21 105.9 103 45.6
Eucgr.H00100 Eucalyptus grandis HOM05D008849 ORTHO05D010556 4.6e-20 101.7 103 44.7
QL11p023932 Quercus lobata HOM05D008849 ORTHO05D010556 6.1e-20 101.3 114 45.6
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 6.1e-20 101.3 99 39.4
Potri.002G263900 Populus trichocarpa HOM05D008849 ORTHO05D010556 3.0e-19 99.0 130 36.2
RcHm_v2.0_Chr4g0396821 Rosa chinensis HOM05D008849 ORTHO05D010556 3.9e-19 98.6 130 37.7
Manes.15G049200 Manihot esculenta HOM05D008849 ORTHO05D010556 6.7e-19 97.8 103 40.8
GSVIVG01012794001 Vitis vinifera HOM05D008849 ORTHO05D010556 2.2e-17 92.8 134 36.6
COL.COLO4_34095 Corchorus olitorius HOM05D008849 ORTHO05D010556 8.2e-17 90.9 103 38.8
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.5e-15 86.7 88 43.2
Eucgr.H00101 Eucalyptus grandis HOM05D008849 ORTHO05D010556 2.6e-15 85.9 101 38.6
Actinidia35944 Actinidia chinensis HOM05D008849 ORTHO05D010556 1.7e-14 83.2 129 32.6
Haze_11547 Corylus avellana HOM05D008849 ORTHO05D010556 6.5e-14 81.3 120 35.0
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 7.2e-13 77.8 105 36.2
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 3.0e-11 72.4 139 33.1
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 5.1e-11 71.6 110 32.7
Dinv27154 Davidia involucrata HOM05D062440 ORTHO05D010556 1.5e-10 70.1 87 34.5
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 1.5e-10 70.1 105 33.3
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 2.0e-10 69.7 140 29.3
Psat1g126640 Pisum sativum HOM05D014907 ORTHO05D010556 5.7e-10 68.2 133 31.6
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 9.7e-10 67.4 107 36.4
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 9.7e-10 67.4 107 35.5
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 9.7e-10 67.4 136 29.4
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 1.3e-09 67.0 106 34.9
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 1.7e-09 66.6 138 27.5
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 1.7e-09 66.6 138 27.5
Hma1.2p1_0218F.1_g092320 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.7e-09 66.6 142 31.0
unitig_899.g15047 Utricularia gibba HOM05D000256 ORTHO05D000119 1.7e-09 66.6 134 29.9
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.2e-09 66.2 138 27.5
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 2.8e-09 65.9 136 30.1
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 3.7e-09 65.5 106 35.8
vmacro22823 Vaccinium macrocarpon HOM05D000256 ORTHO05D000119 3.7e-09 65.5 81 35.8
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 4.8e-09 65.1 105 32.4
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 6.3e-09 64.7 112 33.0
PGSC0003DMG400014348 Solanum tuberosum HOM05D000256 ORTHO05D000119 8.2e-09 64.3 110 33.6
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 1.1e-08 63.9 136 30.1
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 1.1e-08 63.9 106 35.8
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.8e-08 63.2 138 27.5
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 1.8e-08 63.2 128 28.1
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 2.4e-08 62.8 122 31.1
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 3.1e-08 62.4 107 32.7
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 3.1e-08 62.4 124 31.5
Gohir.A05G316800 Gossypium hirsutum HOM05D005430 ORTHO05D007814 4.1e-08 62.0 120 28.3
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 4.1e-08 62.0 143 32.2
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.1e-08 62.0 110 31.8
Rhsim09G0046300 Rhododendron simsii HOM05D000256 ORTHO05D000119 4.1e-08 62.0 141 29.1
RhsimUnG0178100 Rhododendron simsii HOM05D000256 ORTHO05D000119 4.1e-08 62.0 141 29.1
RhsimUnG0182200 Rhododendron simsii HOM05D000256 ORTHO05D000119 4.1e-08 62.0 141 29.1
Solyc03g025660.1 Solanum lycopersicum HOM05D000256 ORTHO05D000119 4.1e-08 62.0 112 33.0
Hma1.2p1_2329F.1_g320010 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.3e-08 61.6 138 32.6
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 5.3e-08 61.6 122 31.1
Thecc.04G212800 Theobroma cacao HOM05D066189 ORTHO05D010556 5.3e-08 61.6 99 34.3
Phvul.006G164600 Phaseolus vulgaris HOM05D014907 ORTHO05D010556 7.0e-08 61.2 102 32.4
Sopen05g031960 Solanum pennellii HOM05D000256 ORTHO05D000119 7.0e-08 61.2 97 36.1
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 9.1e-08 60.8 106 34.0
Glyma.13G218125 Glycine max HOM05D014907 ORTHO05D010556 9.1e-08 60.8 134 28.4
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.2e-07 60.5 117 29.9
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 1.5e-07 60.1 106 32.1
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 2.0e-07 59.7 134 32.1
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 2.0e-07 59.7 127 31.5
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.0e-07 59.7 141 27.0
Medtr2g461570 Medicago truncatula HOM05D014907 ORTHO05D010556 2.0e-07 59.7 100 31.0
Solyc05g053465.1 Solanum lycopersicum HOM05D000256 ORTHO05D000119 2.0e-07 59.7 110 32.7
Solyc09g011100.1 Solanum lycopersicum HOM05D000256 ORTHO05D000119 2.6e-07 59.3 143 27.3
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 2.6e-07 59.3 105 31.4
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 3.4e-07 58.9 106 32.1
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 4.5e-07 58.5 130 31.5
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 4.5e-07 58.5 130 31.5
CAN.G194.30 Capsicum annuum HOM05D000256 ORTHO05D000119 4.5e-07 58.5 114 34.2
Migut.G00701 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.5e-07 58.5 93 30.1
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 4.5e-07 58.5 120 28.3
SGA_v2.0_scaffold2G01374 Striga asiatica HOM05D000256 ORTHO05D000119 4.5e-07 58.5 104 31.7
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 5.9e-07 58.2 120 28.3
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 5.9e-07 58.2 133 29.3
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 5.9e-07 58.2 141 31.2
Migut.F01971 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.0e-06 57.4 134 27.6
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 1.0e-06 57.4 133 30.1
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 1.0e-06 57.4 107 31.8
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 1.0e-06 57.4 136 31.6
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 1.0e-06 57.4 136 33.1
Sopen09g005850 Solanum pennellii HOM05D000256 ORTHO05D000119 1.0e-06 57.4 113 32.7
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 1.0e-06 57.4 135 29.6
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 1.3e-06 57.0 134 31.3
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 1.3e-06 57.0 136 28.7
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.3e-06 57.0 144 27.8
MD13G1110700 Malus domestica HOM05D000256 ORTHO05D000119 1.3e-06 57.0 137 29.9
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 1.3e-06 57.0 106 34.0
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 1.3e-06 57.0 107 36.4
CAN.G884.1 Capsicum annuum HOM05D000256 ORTHO05D000119 1.7e-06 56.6 97 29.9
Peaxi162Scf00558g00319 Petunia axillaris HOM05D000256 ORTHO05D000119 1.7e-06 56.6 92 39.1
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 1.7e-06 56.6 137 30.7
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 2.2e-06 56.2 138 31.9
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 2.2e-06 56.2 145 30.3
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 2.2e-06 56.2 132 29.5
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 2.9e-06 55.8 141 30.5
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.9e-06 55.8 136 31.6
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.9e-06 55.8 136 31.6
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 2.9e-06 55.8 136 31.6
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 2.9e-06 55.8 107 34.6
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 2.9e-06 55.8 108 32.4
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 3.8e-06 55.5 107 33.6
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.8e-06 55.5 120 26.7
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.8e-06 55.5 107 36.4
Migut.F01732 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.8e-06 55.5 135 28.1
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 3.8e-06 55.5 107 31.8
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 5.0e-06 55.1 137 30.7
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 5.0e-06 55.1 108 34.3
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 5.0e-06 55.1 135 30.4
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 5.0e-06 55.1 136 27.9
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 5.0e-06 55.1 139 31.7
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 5.0e-06 55.1 106 31.1
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 5.0e-06 55.1 104 29.8
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 5.0e-06 55.1 106 31.1
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 6.5e-06 54.7 105 33.3
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 6.5e-06 54.7 141 31.9
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 6.5e-06 54.7 106 30.2
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 6.5e-06 54.7 141 30.5
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 6.5e-06 54.7 144 29.2
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 8.5e-06 54.3 133 30.1
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 8.5e-06 54.3 133 30.1
COL.COLO4_34093 Corchorus olitorius HOM05D066189 ORTHO05D010556 8.5e-06 54.3 100 35.0
Migut.N00383 Erythranthe guttata HOM05D000256 ORTHO05D000119 8.5e-06 54.3 120 26.7
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 8.5e-06 54.3 106 31.1
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 8.5e-06 54.3 137 27.7


User provided reference genes

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