Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396761 Rosa chinensis HOM05D002706 ORTHO05D003253 7.7e-24 112.8 52 100.0
RcHm_v2.0_Chr1g0340751 Rosa chinensis HOM05D002706 ORTHO05D003253 3.0e-20 100.9 52 90.4
RcHm_v2.0_Chr5g0057181 Rosa chinensis HOM05D002706 ORTHO05D003253 5.2e-12 73.6 44 79.5
FAN04G0945 Fragaria x ananassa HOM05D002706 ORTHO05D003253 2.0e-11 71.6 44 75.0
FAN08G2484 Fragaria x ananassa HOM05D002706 ORTHO05D003253 2.0e-11 71.6 44 75.0
FAN13G0625 Fragaria x ananassa HOM05D002706 ORTHO05D003253 2.0e-11 71.6 44 75.0
MD04G1034100 Malus domestica HOM05D002706 ORTHO05D003253 2.0e-11 71.6 44 77.3
MD06G1084100 Malus domestica HOM05D002706 ORTHO05D003253 2.0e-11 71.6 44 77.3
FvH4_5g02490 Fragaria vesca HOM05D002706 ORTHO05D003253 4.4e-11 70.5 44 75.0
Sed0016965 Sechium edule HOM05D002706 ORTHO05D003253 7.5e-11 69.7 44 75.0
Haze_00936 Corylus avellana HOM05D002706 ORTHO05D003253 9.8e-11 69.3 44 72.7
Eucgr.A00956 Eucalyptus grandis HOM05D002706 ORTHO05D003253 9.8e-11 69.3 44 72.7
Eucgr.K00934 Eucalyptus grandis HOM05D002706 ORTHO05D003253 9.8e-11 69.3 44 72.7
CiPaw.12G092900 Carya illinoinensis HOM05D002706 ORTHO05D003253 1.3e-10 68.9 44 72.7
ClCG01G002670 Citrullus lanatus HOM05D002706 ORTHO05D003253 1.3e-10 68.9 44 72.7
FAN18G2357 Fragaria x ananassa HOM05D002706 ORTHO05D003253 1.3e-10 68.9 44 70.5
Sed0009702 Sechium edule HOM05D002706 ORTHO05D003253 1.3e-10 68.9 44 72.7
MELO3C005679.2 Cucumis melo HOM05D002706 ORTHO05D003253 1.7e-10 68.6 44 72.7
CsaV3_5G002780 Cucumis sativus L. HOM05D002706 ORTHO05D003253 1.7e-10 68.6 44 72.7
Gorai.012G101000 Gossypium raimondii HOM05D002706 ORTHO05D003253 2.2e-10 68.2 44 70.5
RcHm_v2.0_Chr7g0197611 Rosa chinensis HOM05D002706 ORTHO05D003253 2.2e-10 68.2 44 72.7
ATR0706G210 Amborella trichopoda HOM05D002706 ORTHO05D003253 2.8e-10 67.8 44 68.2
Cre03.g145727 Chlamydomonas reinhardtii HOM05D002706 ORTHO05D003253 3.7e-10 67.4 44 70.5
Aqoxy5G03847 Aquilegia oxysepala HOM05D002706 ORTHO05D003253 4.8e-10 67.0 44 68.2
CANSAT80G1781 Cannabis sativa HOM05D002706 ORTHO05D003253 4.8e-10 67.0 44 68.2
CiPaw.11G135000 Carya illinoinensis HOM05D002706 ORTHO05D003253 4.8e-10 67.0 44 70.5
Nn1g04262 Nelumbo nucifera HOM05D002706 ORTHO05D003253 4.8e-10 67.0 44 70.5
SGA_v2.0_scaffold181G39798 Striga asiatica HOM05D002706 ORTHO05D003253 4.8e-10 67.0 44 68.2
SGA_v2.0_scaffold73G24346 Striga asiatica HOM05D002706 ORTHO05D003253 4.8e-10 67.0 44 68.2
GSVIVG01019752001 Vitis vinifera HOM05D002706 ORTHO05D003253 4.8e-10 67.0 44 70.5
CSS0035683 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 6.3e-10 66.6 44 70.5
CSS0045890 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 6.3e-10 66.6 44 70.5
Prupe.5G100500 Prunus persica HOM05D002706 ORTHO05D003253 6.3e-10 66.6 44 70.5
vmacro12011 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 6.3e-10 66.6 44 70.5
Dinv26669 Davidia involucrata HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 70.5
Duzib160G0388 Durio zibethinus HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
Duzib192G0782 Durio zibethinus HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
Gohir.A05G115200 Gossypium hirsutum HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
Gohir.D05G115700 Gossypium hirsutum HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
Gohir.D05G323366 Gossypium hirsutum HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
Gorai.009G119700 Gossypium raimondii HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
HanXRQChr03g0077621 Helianthus annuus HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
HanXRQChr03g0077631 Helianthus annuus HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
Thecc.06G055700 Theobroma cacao HOM05D002706 ORTHO05D003253 8.3e-10 66.2 44 68.2
Actinidia35174 Actinidia chinensis HOM05D002706 ORTHO05D003253 1.1e-09 65.9 44 68.2
Ciclev10005105m.g Citrus clementina HOM05D002706 ORTHO05D003253 1.1e-09 65.9 44 68.2
Manes.05G136800 Manihot esculenta HOM05D002706 ORTHO05D003253 1.1e-09 65.9 44 68.2
Oeu026467.1 Olea europaea HOM05D002706 ORTHO05D003253 1.1e-09 65.9 44 65.9
Peaxi162Scf00111g00823 Petunia axillaris HOM05D002706 ORTHO05D003253 1.1e-09 65.9 44 68.2
Rhsim06G0185200 Rhododendron simsii HOM05D002706 ORTHO05D003253 1.1e-09 65.9 44 68.2
PGSC0003DMG400025166 Solanum tuberosum HOM05D002706 ORTHO05D003253 1.1e-09 65.9 44 68.2
Actinidia18846 Actinidia chinensis HOM05D002706 ORTHO05D003253 1.4e-09 65.5 44 68.2
MSTRG.15013 Avicennia marina HOM05D002706 ORTHO05D003253 1.4e-09 65.5 44 65.9
MSTRG.6719 Avicennia marina HOM05D002706 ORTHO05D003253 1.4e-09 65.5 44 65.9
Manes.01G016300 Manihot esculenta HOM05D002706 ORTHO05D003253 1.4e-09 65.5 44 68.2
PSO170G0959 Papaver somniferum HOM05D002706 ORTHO05D003253 1.4e-09 65.5 44 68.2
PSO528G0166 Papaver somniferum HOM05D002706 ORTHO05D003253 1.4e-09 65.5 44 68.2
AL4G29620 Arabidopsis lyrata HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 68.2
AT2G33840 Arabidopsis thaliana HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 68.2
Carub.0004s1552 Capsella rubella HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 68.2
CDE02G3904 Ceratophyllum demersum HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 65.9
CDE04G3144 Ceratophyllum demersum HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 65.9
COL.COLO4_31141 Corchorus olitorius HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 65.9
Thhalv10016782m.g Eutrema salsugineum HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 68.2
Nitab4.5_0001662g0040 Nicotiana tabacum HOM05D002706 ORTHO05D003253 1.8e-09 65.1 52 59.6
Sc01g0009590 Simmondsia chinensis HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 65.9
Sc22g0005590 Simmondsia chinensis HOM05D002706 ORTHO05D003253 1.8e-09 65.1 44 65.9
CAN.G322.108 Capsicum annuum HOM05D002706 ORTHO05D003253 2.4e-09 64.7 44 65.9
Cc05_g10340 Coffea canephora HOM05D002706 ORTHO05D003253 2.4e-09 64.7 44 65.9
Nitab4.5_0002495g0060 Nicotiana tabacum HOM05D002706 ORTHO05D003253 2.4e-09 64.7 44 65.9
Nitab4.5_0004287g0100 Nicotiana tabacum HOM05D002706 ORTHO05D003253 2.4e-09 64.7 44 65.9
Solyc01g109360.3 Solanum lycopersicum HOM05D002706 ORTHO05D003253 2.4e-09 64.7 44 65.9
Sopen01g051550 Solanum pennellii HOM05D002706 ORTHO05D003253 2.4e-09 64.7 44 65.9
Ca_26354_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
Glyma.01G176800 Glycine max HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
Glyma.11G065500 Glycine max HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
Gohir.D09G002080 Gossypium hirsutum HOM05D002706 ORTHO05D003253 3.1e-09 64.3 43 67.4
Lsat_1_v5_gn_3_114641 Lactuca sativa HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
Lsat_1_v5_gn_5_125020 Lactuca sativa HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
Lj5g0021295 Lotus japonicus HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
Medtr1g053270 Medicago truncatula HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
Nitab4.5_0004280g0080 Nicotiana tabacum HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 63.6
Peaxi162Scf00016g01038 Petunia axillaris HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 63.6
Phvul.002G027700 Phaseolus vulgaris HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
Psat6g116280 Pisum sativum HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
TPR.G29099 Trifolium pratense HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
unitig_62.g23090 Utricularia gibba HOM05D002706 ORTHO05D003253 3.1e-09 64.3 44 65.9
AagrBONN_evm.TU.Sc2ySwM_228.3911 Anthoceros agrestis HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
AagrBONN_evm.TU.Sc2ySwM_368.2209 Anthoceros agrestis HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
Gorai.011G189900 Gossypium raimondii HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
HanXRQChr10g0297421 Helianthus annuus HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
Lj1A816G36 Lonicera japonica HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
Potri.008G010201 Populus trichocarpa HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
Potri.010G248900 Populus trichocarpa HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
Sabra08G0006100 Salix brachista HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
Sabra10G0193900 Salix brachista HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
THA.LOC104812293 Tarenaya hassleriana HOM05D002706 ORTHO05D003253 4.1e-09 63.9 44 65.9
Atru.chr12.1398 Acer truncatum HOM05D002706 ORTHO05D003253 5.4e-09 63.5 44 65.9
HanXRQChr05g0132171 Helianthus annuus HOM05D002706 ORTHO05D003253 5.4e-09 63.5 44 63.6
MBI01_g16593_MAGBIO Magnolia biondii HOM05D002706 ORTHO05D003253 5.4e-09 63.5 44 65.9
Oeu009877.1 Olea europaea HOM05D002706 ORTHO05D003253 5.4e-09 63.5 44 61.4
Hma1.2p1_0325F.1_g125930 Hydrangea macrophylla HOM05D002706 ORTHO05D003253 7.0e-09 63.2 44 65.9
Lalb_Chr06g0163611 Lupinus albus HOM05D002706 ORTHO05D003253 7.0e-09 63.2 44 65.9
Lalb_Chr21g0306911 Lupinus albus HOM05D002706 ORTHO05D003253 7.0e-09 63.2 44 65.9
Hund23521 Selenicereus undatus HOM05D002706 ORTHO05D003253 7.0e-09 63.2 44 65.9
arahy.Tifrunner.gnm1.ann1.0UMA9Y Arachis hypogaea HOM05D002706 ORTHO05D003253 9.1e-09 62.8 39 69.2
arahy.Tifrunner.gnm1.ann1.SSK3YK Arachis hypogaea HOM05D002706 ORTHO05D003253 9.1e-09 62.8 39 69.2
Cpa.g.sc13.153 Carica papaya HOM05D002706 ORTHO05D003253 9.1e-09 62.8 44 63.6
CBR_g3647 Chara braunii HOM05D002706 ORTHO05D003253 9.1e-09 62.8 44 61.4
COL.COLO4_12902 Corchorus olitorius HOM05D002706 ORTHO05D003253 9.1e-09 62.8 44 61.4
SEGI_02662 Sequoiadendron giganteum HOM05D002706 ORTHO05D003253 9.1e-09 62.8 44 63.6
TWI32G0184 Tripterygium wilfordii HOM05D002706 ORTHO05D003253 9.1e-09 62.8 44 65.9
TWI60G1149 Tripterygium wilfordii HOM05D002706 ORTHO05D003253 9.1e-09 62.8 44 65.9
Lj5g0024819 Lotus japonicus HOM05D002706 ORTHO05D003253 1.2e-08 62.4 44 65.9
HPP92_022522 Vanilla planifolia HOM05D002706 ORTHO05D003253 1.2e-08 62.4 44 61.4
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.6e-08 62.0 44 61.4
ECA234G1375 Erigeron canadensis HOM05D002706 ORTHO05D003253 1.6e-08 62.0 44 63.6
ECA240G0438 Erigeron canadensis HOM05D002706 ORTHO05D003253 1.6e-08 62.0 44 63.6
Mapoly0023s0178 Marchantia polymorpha HOM05D002706 ORTHO05D003253 1.6e-08 62.0 44 63.6
RhsimUnG0025800 Rhododendron simsii HOM05D002706 ORTHO05D003253 1.6e-08 62.0 44 63.6
RhsimUnG0028400 Rhododendron simsii HOM05D002706 ORTHO05D003253 1.6e-08 62.0 44 63.6
vmacro11878 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 1.6e-08 62.0 44 63.6
Zm00001eb172860 Zea mays HOM05D002706 ORTHO05D003253 1.6e-08 62.0 44 61.4
A08p25670 Brassica napus HOM05D002706 ORTHO05D003253 2.0e-08 61.6 44 63.6
BraA08t34517Z Brassica rapa HOM05D002706 ORTHO05D003253 2.0e-08 61.6 44 63.6
CARHR127960 Cardamine hirsuta HOM05D002706 ORTHO05D003253 2.0e-08 61.6 44 63.6
Ah.11g047900 Amaranthus hybridus HOM05D002706 ORTHO05D003253 2.7e-08 61.2 44 65.9
Ah.14g085530 Amaranthus hybridus HOM05D002706 ORTHO05D003253 2.7e-08 61.2 44 65.9
EL10Ac7g17308 Beta vulgaris HOM05D002706 ORTHO05D003253 2.7e-08 61.2 44 65.9
Medtr1g007340 Medicago truncatula HOM05D002706 ORTHO05D003253 2.7e-08 61.2 44 61.4
Zm00001eb416340 Zea mays HOM05D002706 ORTHO05D003253 2.7e-08 61.2 44 61.4
AL1G41950 Arabidopsis lyrata HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
AT1G28350 Arabidopsis thaliana HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
BcaB03g13934 Brassica carinata HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
BcaC01g00037 Brassica carinata HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
BcaC06g35356 Brassica carinata HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
A07p11280 Brassica napus HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
C03p75020 Brassica napus HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
C07p17030 Brassica napus HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
BolC3t19754H Brassica oleracea HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
BolC7t42205H Brassica oleracea HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
BraA07t28919Z Brassica rapa HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
Carub.0001s2681 Capsella rubella HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
CARHR027840 Cardamine hirsuta HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
ECA232G2232 Erigeron canadensis HOM05D002706 ORTHO05D003253 3.5e-08 60.8 44 61.4
Os08g0150800 Oryza sativa ssp. japonica HOM05D002706 ORTHO05D003253 3.5e-08 60.8 44 61.4
Sp1g24590 Schrenkiella parvula HOM05D002706 ORTHO05D003253 3.5e-08 60.8 39 69.2
TAR626G1221 Trochodendron aralioides HOM05D002706 ORTHO05D003253 3.5e-08 60.8 44 63.6
Aa31LG6G10410 Aethionema arabicum HOM05D002706 ORTHO05D003253 4.5e-08 60.5 39 66.7
PGR031G1433 Punica granatum HOM05D002706 ORTHO05D003253 4.5e-08 60.5 44 61.4
QL12p032909 Quercus lobata HOM05D002706 ORTHO05D003253 4.5e-08 60.5 44 61.4
TPR.G14321 Trifolium pratense HOM05D002706 ORTHO05D003253 4.5e-08 60.5 44 61.4
RcHm_v2.0_Chr2g0166361 Rosa chinensis HOM05D002706 ORTHO05D003253 5.9e-08 60.1 44 59.1
CSS0015711 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 7.7e-08 59.7 44 61.4
MCO11G552 Micromonas commoda HOM05D002706 ORTHO05D003253 7.7e-08 59.7 44 61.4
PRCOL_00003656 Prasinoderma coloniale HOM05D002706 ORTHO05D003253 7.7e-08 59.7 44 59.1
BcaB03g12113 Brassica carinata HOM05D002706 ORTHO05D003253 1.3e-07 58.9 39 64.1
A08p11000 Brassica napus HOM05D002706 ORTHO05D003253 1.7e-07 58.5 44 61.4
CSS0015343 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 1.7e-07 58.5 44 61.4
CSS0016628 Camellia sinensis var. sinensis HOM05D002706 ORTHO05D003253 1.7e-07 58.5 44 61.4
Migut.N01842 Erythranthe guttata HOM05D002706 ORTHO05D003253 2.2e-07 58.2 44 59.1
AUR62014422 Chenopodium quinoa HOM05D002706 ORTHO05D003253 5.0e-07 57.0 44 61.4
AUR62019158 Chenopodium quinoa HOM05D002706 ORTHO05D003253 5.0e-07 57.0 44 61.4
AUR62043927 Chenopodium quinoa HOM05D002706 ORTHO05D003253 5.0e-07 57.0 44 61.4
Ca_03358_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 5.0e-07 57.0 44 56.8
Ca_29898_v3 Cicer arietinum L. HOM05D002706 ORTHO05D003253 5.0e-07 57.0 44 56.8
Rhsim05G0015300 Rhododendron simsii HOM05D002706 ORTHO05D003253 1.9e-06 55.1 44 59.1
Prupe.5G096900 Prunus persica HOM05D002706 ORTHO05D003253 2.5e-06 54.7 44 56.8
vmacro17413 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 3.2e-06 54.3 44 54.5
Pp3c6_19930 Physcomitrium patens HOM05D002706 ORTHO05D003253 4.2e-06 53.9 44 56.8
SMO364G0051 Selaginella moellendorffii HOM05D002706 ORTHO05D003253 5.5e-06 53.5 46 58.7
TPR.G14339 Trifolium pratense HOM05D002706 ORTHO05D003253 5.5e-06 53.5 44 52.3
vmacro17392 Vaccinium macrocarpon HOM05D002706 ORTHO05D003253 9.5e-06 52.8 44 54.5


User provided reference genes

Program Settings