Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396631 Rosa chinensis HOM05D006670 ORTHO05D008715 1.0e-146 523.5 281 100.0
FvH4_4g05510 Fragaria vesca HOM05D006670 ORTHO05D008715 1.1e-135 486.9 275 93.5
FAN22G1637 Fragaria x ananassa HOM05D006670 ORTHO05D008715 1.8e-135 486.1 275 92.7
FAN12G2738 Fragaria x ananassa HOM05D006670 ORTHO05D008715 2.6e-134 482.3 275 92.7
FAN07G0632 Fragaria x ananassa HOM05D006670 ORTHO05D008715 4.5e-134 481.5 275 92.7
Prupe.1G056900 Prunus persica HOM05D006670 ORTHO05D008715 9.6e-129 463.8 277 87.0
MD13G1229700 Malus domestica HOM05D006670 ORTHO05D008715 6.4e-125 451.1 277 84.8
Haze_11539 Corylus avellana HOM05D006670 ORTHO05D008715 2.1e-120 436.0 280 81.4
CiPaw.01G205600 Carya illinoinensis HOM05D006670 ORTHO05D008715 3.1e-119 432.2 281 79.7
Cfa014868 Carpinus fangiana HOM05D006670 ORTHO05D008715 2.2e-117 426.0 279 80.3
QL06p022765 Quercus lobata HOM05D006670 ORTHO05D008715 1.9e-116 422.9 281 79.4
Dinv27152 Davidia involucrata HOM05D006670 ORTHO05D008715 3.9e-114 415.2 280 77.5
CANSAT78G1187 Cannabis sativa HOM05D006670 ORTHO05D008715 1.3e-112 410.2 278 75.9
COL.COLO4_05724 Corchorus olitorius HOM05D006670 ORTHO05D008715 1.6e-112 409.8 273 79.1
Ciclev10005609m.g Citrus clementina HOM05D006670 ORTHO05D008715 6.3e-112 407.9 274 78.1
Manes.15G049800 Manihot esculenta HOM05D006670 ORTHO05D008715 6.9e-111 404.4 266 77.1
Duzib212G0230 Durio zibethinus HOM05D006670 ORTHO05D008715 3.4e-110 402.1 273 77.3
Thecc.04G214700 Theobroma cacao HOM05D006670 ORTHO05D008715 7.6e-110 401.0 278 76.6
Potri.003G174400 Populus trichocarpa HOM05D006670 ORTHO05D008715 1.3e-109 400.2 277 74.4
Sed0004390 Sechium edule HOM05D006670 ORTHO05D008715 1.3e-109 400.2 273 76.9
MELO3C006346.2 Cucumis melo HOM05D006670 ORTHO05D008715 2.9e-109 399.1 275 74.2
CSS0047689 Camellia sinensis var. sinensis HOM05D006670 ORTHO05D008715 5.0e-109 398.3 276 75.0
Sabra03G0127900 Salix brachista HOM05D006670 ORTHO05D008715 5.0e-109 398.3 276 74.3
MBI10_g16834_MAGBIO Magnolia biondii HOM05D006670 ORTHO05D008715 1.4e-108 396.7 277 72.6
Aqoxy2G03824 Aquilegia oxysepala HOM05D006670 ORTHO05D008715 3.2e-108 395.6 281 71.2
ClCG05G003670 Citrullus lanatus HOM05D006670 ORTHO05D008715 7.2e-108 394.4 280 74.3
CsaV3_3G011380 Cucumis sativus L. HOM05D006670 ORTHO05D008715 9.3e-108 394.0 274 73.4
Manes.03G154700 Manihot esculenta HOM05D006670 ORTHO05D008715 1.6e-107 393.3 279 73.5
PGR083G1840 Punica granatum HOM05D006670 ORTHO05D008715 2.1e-107 392.9 275 74.2
TAR636G1307 Trochodendron aralioides HOM05D006670 ORTHO05D008715 4.6e-107 391.7 275 72.7
CSS0048127 Camellia sinensis var. sinensis HOM05D006670 ORTHO05D008715 1.3e-106 390.2 276 73.6
Rhsim09G0046600 Rhododendron simsii HOM05D006670 ORTHO05D008715 1.8e-106 389.8 268 75.0
Gorai.011G163000 Gossypium raimondii HOM05D006670 ORTHO05D008715 3.9e-106 388.7 273 75.5
Rhsim09G0047600 Rhododendron simsii HOM05D006670 ORTHO05D008715 6.7e-106 387.9 276 72.1
Gohir.D10G145900 Gossypium hirsutum HOM05D006670 ORTHO05D008715 1.1e-105 387.1 273 75.1
AL3G39350 Arabidopsis lyrata HOM05D006670 ORTHO05D008715 7.4e-105 384.4 276 71.0
DCAR_024309 Daucus carota HOM05D006670 ORTHO05D008715 1.6e-104 383.3 270 73.7
HanXRQChr01g0022661 Helianthus annuus HOM05D006670 ORTHO05D008715 1.6e-104 383.3 275 70.2
Gohir.A10G120500 Gossypium hirsutum HOM05D006670 ORTHO05D008715 2.8e-104 382.5 273 74.0
Lsat_1_v5_gn_0_4721 Lactuca sativa HOM05D006670 ORTHO05D008715 3.7e-104 382.1 279 69.9
BcaB06g26594 Brassica carinata HOM05D006670 ORTHO05D008715 1.8e-103 379.8 276 70.7
Cpa.g.sc59.72 Carica papaya HOM05D006670 ORTHO05D008715 4.1e-103 378.6 272 71.3
Thhalv10002635m.g Eutrema salsugineum HOM05D006670 ORTHO05D008715 5.3e-103 378.3 272 70.2
AT3G24030 Arabidopsis thaliana HOM05D006670 ORTHO05D008715 1.5e-102 376.7 276 69.6
Sc13g0002920 Simmondsia chinensis HOM05D006670 ORTHO05D008715 1.5e-102 376.7 270 73.0
Lalb_Chr01g0011161 Lupinus albus HOM05D006670 ORTHO05D008715 2.0e-102 376.3 269 73.6
PSO063G6527 Papaver somniferum HOM05D006670 ORTHO05D008715 3.4e-102 375.6 282 69.1
A07p08240 Brassica napus HOM05D006670 ORTHO05D008715 1.3e-101 373.6 273 71.4
Sp3g21930 Schrenkiella parvula HOM05D006670 ORTHO05D008715 1.3e-101 373.6 276 69.6
CARHR100200 Cardamine hirsuta HOM05D006670 ORTHO05D008715 1.7e-101 373.2 276 68.5
BolC7t41764H Brassica oleracea HOM05D006670 ORTHO05D008715 5.0e-101 371.7 273 70.7
Carub.0003s2449 Capsella rubella HOM05D006670 ORTHO05D008715 6.5e-101 371.3 276 69.2
PSO017G1158 Papaver somniferum HOM05D006670 ORTHO05D008715 6.5e-101 371.3 282 69.1
arahy.Tifrunner.gnm1.ann1.M1QCRY Arachis hypogaea HOM05D006670 ORTHO05D008715 1.1e-100 370.5 273 71.8
BraA07t28607Z Brassica rapa HOM05D006670 ORTHO05D008715 1.1e-100 370.5 273 70.3
vmacro00519 Vaccinium macrocarpon HOM05D006670 ORTHO05D008715 1.1e-100 370.5 325 62.5
Hund24851 Selenicereus undatus HOM05D006670 ORTHO05D008715 1.9e-100 369.8 280 69.3
Ca_11808_v3 Cicer arietinum L. HOM05D006670 ORTHO05D008715 2.5e-100 369.4 280 71.1
ECA248G0542 Erigeron canadensis HOM05D006670 ORTHO05D008715 2.5e-100 369.4 277 67.1
arahy.Tifrunner.gnm1.ann1.CI907D Arachis hypogaea HOM05D006670 ORTHO05D008715 9.4e-100 367.5 273 71.4
Glyma.10G127400 Glycine max HOM05D006670 ORTHO05D008715 9.4e-100 367.5 275 70.9
BcaC06g35628 Brassica carinata HOM05D006670 ORTHO05D008715 1.2e-99 367.1 273 70.0
C07p12780 Brassica napus HOM05D006670 ORTHO05D008715 1.2e-99 367.1 273 70.0
VMungo0720G2028 Vigna mungo HOM05D006670 ORTHO05D008715 2.7e-99 365.9 285 69.5
AUR62035928 Chenopodium quinoa HOM05D006670 ORTHO05D008715 6.1e-99 364.8 277 69.0
AUR62035321 Chenopodium quinoa HOM05D006670 ORTHO05D008715 7.9e-99 364.4 277 67.5
Phvul.007G238000 Phaseolus vulgaris HOM05D006670 ORTHO05D008715 7.9e-99 364.4 281 69.0
Actinidia25088 Actinidia chinensis HOM05D006670 ORTHO05D008715 3.9e-98 362.1 243 77.8
Eucgr.H02870 Eucalyptus grandis HOM05D006670 ORTHO05D008715 8.8e-98 360.9 266 72.9
MSTRG.4202 Avicennia marina HOM05D006670 ORTHO05D008715 1.5e-97 360.1 279 68.1
ATR0787G198 Amborella trichopoda HOM05D006670 ORTHO05D008715 5.7e-97 358.2 266 69.2
Lju414A3G25 Lonicera japonica HOM05D006670 ORTHO05D008715 7.4e-97 357.8 241 78.0
Ah.04g153360 Amaranthus hybridus HOM05D006670 ORTHO05D008715 1.7e-96 356.7 281 67.3
Psat6g047400 Pisum sativum HOM05D006670 ORTHO05D008715 8.2e-96 354.4 275 68.4
Medtr1g046510 Medicago truncatula HOM05D006670 ORTHO05D008715 1.8e-95 353.2 282 67.4
Medtr1g046790 Medicago truncatula HOM05D006670 ORTHO05D008715 2.4e-95 352.8 282 66.7
Sopen05g031980 Solanum pennellii HOM05D006670 ORTHO05D008715 5.3e-95 351.7 280 66.4
TPR.G11296 Trifolium pratense HOM05D006670 ORTHO05D008715 5.3e-95 351.7 281 67.6
THA.LOC104808732 Tarenaya hassleriana HOM05D006670 ORTHO05D008715 1.2e-94 350.5 276 66.3
SHI00002 Sapria himalayana HOM05D006670 ORTHO05D008715 2.0e-94 349.7 301 63.1
Migut.G00614 Erythranthe guttata HOM05D006670 ORTHO05D008715 4.5e-94 348.6 281 66.5
Atru.chr4.1814 Acer truncatum HOM05D006670 ORTHO05D008715 1.0e-93 347.4 286 66.4
Lj6g0025132 Lotus japonicus HOM05D006670 ORTHO05D008715 1.3e-93 347.1 279 65.9
Nn3g19866 Nelumbo nucifera HOM05D006670 ORTHO05D008715 1.7e-93 346.7 234 75.2
Peaxi162Scf00536g00711 Petunia axillaris HOM05D006670 ORTHO05D008715 6.5e-93 344.7 264 67.8
SGA_v2.0_scaffold57G20164 Striga asiatica HOM05D006670 ORTHO05D008715 1.9e-92 343.2 278 64.0
SEGI_39672 Sequoiadendron giganteum HOM05D006670 ORTHO05D008715 8.8e-90 334.3 266 65.8
Mapoly0087s0052 Marchantia polymorpha HOM05D006670 ORTHO05D008715 2.6e-89 332.8 266 64.3
GSVIVG01029032001 Vitis vinifera HOM05D006670 ORTHO05D008715 3.3e-89 332.4 225 77.3
Pp3c9_10780 Physcomitrium patens HOM05D006670 ORTHO05D008715 1.8e-87 326.6 266 61.7
Zm00001eb341310 Zea mays HOM05D006670 ORTHO05D008715 4.1e-87 325.5 276 62.0
Nitab4.5_0001769g0060 Nicotiana tabacum HOM05D006670 ORTHO05D008715 1.0e-85 320.9 278 61.5
Nitab4.5_0012036g0010 Nicotiana tabacum HOM05D006670 ORTHO05D008715 3.8e-85 318.9 278 60.8
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 5.5e-84 315.1 270 60.0
PGSC0003DMG400027217 Solanum tuberosum HOM05D006670 ORTHO05D008715 7.2e-84 314.7 240 68.3
Cc03_g07080 Coffea canephora HOM05D006670 ORTHO05D008715 2.1e-83 313.2 224 71.0
SMO137G0262 Selaginella moellendorffii HOM05D006670 ORTHO05D008715 4.8e-80 302.0 266 62.4
CDE01G0405 Ceratophyllum demersum HOM05D007853 ORTHO05D009873 8.2e-80 301.2 236 65.3
Oeu022324.1 Olea europaea HOM05D006670 ORTHO05D008715 5.3e-79 298.5 240 64.6
RhsimUnG0181700 Rhododendron simsii HOM05D006670 ORTHO05D008715 1.2e-75 287.3 268 58.6
unitig_747.g21700 Utricularia gibba HOM05D006670 ORTHO05D008715 4.7e-75 285.4 391 43.5
SMO134G0250 Selaginella moellendorffii HOM05D006670 ORTHO05D008715 1.0e-69 267.7 268 55.2
EL10Ac3g06772 Beta vulgaris HOM05D006670 ORTHO05D008715 2.1e-67 260.0 228 62.3
Cre06.g255350 Chlamydomonas reinhardtii HOM05D006670 ORTHO05D008715 3.0e-66 256.1 269 53.2
Dinv44414 Davidia involucrata HOM05D006670 ORTHO05D008715 8.6e-61 238.0 149 81.2
Psat7g020640 Pisum sativum HOM05D006670 ORTHO05D008715 2.3e-53 213.4 184 66.3
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.1e-51 206.8 145 70.3
Lju414A3G24 Lonicera japonica HOM05D006670 ORTHO05D008715 3.4e-49 199.5 183 63.4
Psat4g139560 Pisum sativum HOM05D006670 ORTHO05D000720 7.5e-49 198.4 220 52.7
CAN.G305.17 Capsicum annuum HOM05D006670 ORTHO05D008715 6.6e-45 185.3 147 61.9
Os01g0363600 Oryza sativa ssp. japonica HOM05D006670 ORTHO05D008715 3.6e-43 179.5 141 59.6
Psat0s5229g0080 Pisum sativum HOM05D006670 ORTHO05D006513 6.8e-42 175.3 217 47.5
Potri.001G053900 Populus trichocarpa HOM05D006670 ORTHO05D008715 4.9e-40 169.1 120 73.3
CAN.G305.16 Capsicum annuum HOM05D006670 ORTHO05D008715 7.8e-38 161.8 135 65.2
Psat4g139640 Pisum sativum HOM05D006670 ORTHO05D002176 1.2e-30 137.9 137 60.6
Sabra01G0038200 Salix brachista HOM05D006670 ORTHO05D349611 3.0e-29 133.3 214 43.5
FAN17G2931 Fragaria x ananassa HOM05D006670 ORTHO05D008715 3.9e-29 132.9 80 90.0
Migut.G00612 Erythranthe guttata HOM05D006670 ORTHO05D008715 1.9e-28 130.6 133 60.9
Lsat_1_v5_gn_5_180420 Lactuca sativa HOM05D006670 ORTHO05D008715 1.9e-28 130.6 119 59.7
PGSC0003DMG402027165 Solanum tuberosum HOM05D006670 ORTHO05D008715 5.1e-21 105.9 80 67.5
Cfa024720 Carpinus fangiana HOM05D005536 ORTHO05D006999 3.3e-20 103.2 253 32.0
Cpa.g.sc59.70 Carica papaya HOM05D006670 ORTHO05D119377 3.7e-11 73.2 108 42.6
Psat5g196680 Pisum sativum HOM05D006670 ORTHO05D008715 3.2e-07 60.1 50 52.0


User provided reference genes

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