Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396531 Rosa chinensis HOM05D007543 ORTHO05D009555 4.4e-103 377.9 178 100.0
Thecc.04G215800 Theobroma cacao HOM05D007543 ORTHO05D009555 4.0e-64 248.4 147 76.2
COL.COLO4_05738 Corchorus olitorius HOM05D007543 ORTHO05D009555 4.4e-63 245.0 146 76.0
Duzib151G0611 Durio zibethinus HOM05D007543 ORTHO05D009555 9.9e-63 243.8 149 73.8
CiPaw.01G206300 Carya illinoinensis HOM05D007543 ORTHO05D009555 4.2e-61 238.4 171 64.9
QL06p022584 Quercus lobata HOM05D007543 ORTHO05D009555 2.7e-60 235.7 149 70.5
Manes.15G048300 Manihot esculenta HOM05D007543 ORTHO05D009555 1.0e-59 233.8 144 72.2
Atru.chr4.1820 Acer truncatum HOM05D007543 ORTHO05D009555 3.9e-59 231.9 145 73.1
Actinidia35927 Actinidia chinensis HOM05D007543 ORTHO05D009555 3.3e-58 228.8 146 69.9
TAR362G0720 Trochodendron aralioides HOM05D007543 ORTHO05D009555 1.6e-57 226.5 146 69.2
CiPaw.02G128000 Carya illinoinensis HOM05D007543 ORTHO05D009555 2.1e-57 226.1 150 67.3
Ciclev10005680m.g Citrus clementina HOM05D007543 ORTHO05D009555 6.2e-57 224.6 144 70.1
Ciclev10005675m.g Citrus clementina HOM05D007543 ORTHO05D009555 1.4e-56 223.4 146 69.2
Potri.010G060800 Populus trichocarpa HOM05D007543 ORTHO05D009555 1.4e-56 223.4 144 68.8
Hma1.2p1_1076F.1_g254630 Hydrangea macrophylla HOM05D007543 ORTHO05D009555 2.4e-56 222.6 161 67.1
Sed0003983 Sechium edule HOM05D007543 ORTHO05D009555 7.6e-55 217.6 148 65.5
TWI53G0267 Tripterygium wilfordii HOM05D007543 ORTHO05D009555 9.9e-55 217.2 155 65.8
Rhsim09G0045000 Rhododendron simsii HOM05D007543 ORTHO05D009555 1.3e-54 216.9 175 59.4
ClCG05G003720 Citrullus lanatus HOM05D007543 ORTHO05D009555 1.7e-54 216.5 173 58.4
Nn1g03077 Nelumbo nucifera HOM05D007543 ORTHO05D009555 2.9e-54 215.7 162 61.7
CsaV3_3G011440 Cucumis sativus L. HOM05D007543 ORTHO05D009555 2.1e-52 209.5 183 56.8
Potri.008G175200 Populus trichocarpa HOM05D007543 ORTHO05D009555 2.1e-52 209.5 171 56.7
DCAR_002284 Daucus carota HOM05D007543 ORTHO05D009555 2.7e-52 209.1 143 66.4
Eucgr.H02864 Eucalyptus grandis HOM05D007543 ORTHO05D009555 3.5e-52 208.8 141 68.1
PGSC0003DMG400011574 Solanum tuberosum HOM05D007543 ORTHO05D009555 1.1e-50 203.8 145 65.5
Nitab4.5_0000451g0150 Nicotiana tabacum HOM05D007543 ORTHO05D009555 1.5e-50 203.4 160 60.0
HanXRQChr01g0022581 Helianthus annuus HOM05D007543 ORTHO05D009555 2.5e-50 202.6 145 66.2
PSO764G0201 Papaver somniferum HOM05D007543 ORTHO05D009555 4.3e-50 201.8 181 54.7
PSO832G0138 Papaver somniferum HOM05D007543 ORTHO05D009555 9.6e-50 200.7 181 54.1
CSS0020488 Camellia sinensis var. sinensis HOM05D007543 ORTHO05D009555 2.1e-49 199.5 177 56.5
MD13G1227700 Malus domestica HOM05D007543 ORTHO05D009555 2.1e-49 199.5 134 73.9
GSVIVG01029024001 Vitis vinifera HOM05D007543 ORTHO05D009555 2.8e-49 199.1 124 72.6
CAN.G1588.1 Capsicum annuum HOM05D007543 ORTHO05D009555 6.2e-49 198.0 144 63.2
Sc19g0005790 Simmondsia chinensis HOM05D007543 ORTHO05D009555 3.1e-48 195.7 166 54.2
Nitab4.5_0003136g0030 Nicotiana tabacum HOM05D007543 ORTHO05D009555 1.5e-47 193.4 181 54.7
Lsat_1_v5_gn_1_76300 Lactuca sativa HOM05D007543 ORTHO05D009555 9.9e-47 190.7 147 61.9
ATR0787G197 Amborella trichopoda HOM05D007543 ORTHO05D009555 2.2e-46 189.5 143 60.1
SEGI_36435 Sequoiadendron giganteum HOM05D007543 ORTHO05D009555 2.9e-46 189.1 143 60.1
EL10Ac3g06745 Beta vulgaris HOM05D007543 ORTHO05D009555 1.4e-45 186.8 137 59.9
Actinidia25090 Actinidia chinensis HOM05D007543 ORTHO05D009555 2.4e-45 186.0 108 73.1
Lsat_1_v5_gn_1_76260 Lactuca sativa HOM05D007543 ORTHO05D009555 1.3e-43 180.3 154 55.8
Lsat_1_v5_gn_2_41901 Lactuca sativa HOM05D007543 ORTHO05D009555 1.8e-43 179.9 143 60.8
Lsat_1_v5_gn_0_4520 Lactuca sativa HOM05D007543 ORTHO05D009555 8.2e-41 171.0 139 60.4
Os07g0170800 Oryza sativa ssp. japonica HOM05D007543 ORTHO05D009555 1.1e-40 170.6 143 53.1
Lsat_1_v5_gn_0_4560 Lactuca sativa HOM05D007543 ORTHO05D009555 1.2e-39 167.2 145 57.2
vmacro00522 Vaccinium macrocarpon HOM05D007543 ORTHO05D009555 2.0e-39 166.4 180 48.9
Zm00001eb222310 Zea mays HOM05D007543 ORTHO05D009555 3.4e-39 165.6 143 52.4
Haze_11534 Corylus avellana HOM05D007543 ORTHO05D009555 4.5e-39 165.2 192 45.3
Sabra08G0133600 Salix brachista HOM05D007543 ORTHO05D009555 1.7e-38 163.3 144 55.6
Migut.G00602 Erythranthe guttata HOM05D007543 ORTHO05D009555 7.9e-36 154.5 102 63.7
HanXRQChr06g0183241 Helianthus annuus HOM05D007543 ORTHO05D009555 5.1e-35 151.8 105 64.8
MELO3C006351.2 Cucumis melo HOM05D007543 ORTHO05D009555 1.1e-34 150.6 146 50.7
Lsat_1_v5_gn_1_76220 Lactuca sativa HOM05D007543 ORTHO05D009555 2.8e-33 146.0 144 52.8
FAN07G2337 Fragaria x ananassa HOM05D007543 ORTHO05D009555 7.2e-29 131.3 63 82.5
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 3.6e-28 129.0 206 36.4
SMO142G0023 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 1.8e-27 126.7 158 40.5
Dinv29774 Davidia involucrata HOM05D007543 ORTHO05D009555 1.8e-24 116.7 107 59.8
Mapoly0044s0133 Marchantia polymorpha HOM05D007543 ORTHO05D009555 1.8e-24 116.7 154 39.6
Cfa014866 Carpinus fangiana HOM05D007543 ORTHO05D009555 1.5e-23 113.6 59 74.6
AUR62035334 Chenopodium quinoa HOM05D007543 ORTHO05D009555 6.5e-22 108.2 61 70.5
AUR62035905 Chenopodium quinoa HOM05D007543 ORTHO05D009555 6.5e-22 108.2 61 70.5
SMO358G0284 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 1.9e-21 106.7 97 47.4
Cc03_g07030 Coffea canephora HOM05D007543 ORTHO05D009555 4.7e-20 102.1 59 71.2
CANSAT78G0099 Cannabis sativa HOM05D007543 ORTHO05D009555 1.0e-19 100.9 63 65.1
AagrBONN_evm.TU.Sc2ySwM_117.1924 Anthoceros agrestis HOM05D007543 ORTHO05D009555 3.0e-19 99.4 167 34.7
AagrBONN_evm.TU.Sc2ySwM_368.1268 Anthoceros agrestis HOM05D007543 ORTHO05D009555 6.7e-19 98.2 155 37.4
AagrBONN_evm.TU.Sc2ySwM_344.5003 Anthoceros agrestis HOM05D007543 ORTHO05D009555 1.1e-18 97.4 126 42.1
FAN11G1069 Fragaria x ananassa HOM05D007543 ORTHO05D009555 4.4e-18 95.5 56 78.6
SMO356G0252 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 1.3e-17 94.0 135 38.5
HanXRQChr01g0022591 Helianthus annuus HOM05D007543 ORTHO05D009555 2.2e-17 93.2 146 39.7
Lj6A641T47 Lonicera japonica HOM05D007543 ORTHO05D009555 2.0e-15 86.7 119 37.0
Cc03_g07020 Coffea canephora HOM05D007543 ORTHO05D009555 7.7e-15 84.7 62 66.1
MD13G1227800 Malus domestica HOM05D007543 ORTHO05D009555 5.0e-14 82.0 51 68.6
Ciclev10006635m.g Citrus clementina HOM05D007543 ORTHO05D009555 2.7e-12 76.3 127 37.8
MBI10_g16799_MAGBIO Magnolia biondii HOM05D007543 ORTHO05D009555 8.0e-12 74.7 48 62.5
ECA248G0596 Erigeron canadensis HOM05D007543 ORTHO05D009555 3.9e-11 72.4 42 69.0
HanXRQChr06g0183251 Helianthus annuus HOM05D007543 ORTHO05D009555 3.9e-11 72.4 43 67.4
Cpa.g.sc59.61 Carica papaya HOM05D007543 ORTHO05D009555 8.8e-11 71.2 84 50.0
unitig_0.g2250 Utricularia gibba HOM05D007543 ORTHO05D009555 1.3e-09 67.4 42 64.3
SalBow2G1589 Salvia bowleyana HOM05D007543 ORTHO05D009555 2.2e-09 66.6 43 67.4
FAN12G3210 Fragaria x ananassa HOM05D007543 ORTHO05D009555 8.2e-09 64.7 37 81.1
Peaxi162Scf00047g00165 Petunia axillaris HOM05D007543 ORTHO05D009555 1.1e-08 64.3 35 68.6
Lj6C641T2 Lonicera japonica HOM05D007543 ORTHO05D009555 5.3e-08 62.0 46 67.4
Cre10.g418851 Chlamydomonas reinhardtii HOM05D007543 ORTHO05D009555 2.0e-07 60.1 148 31.8
Solyc09g091150.2 Solanum lycopersicum HOM05D007543 ORTHO05D009555 3.5e-07 59.3 52 57.7
MBI10_g16797_MAGBIO Magnolia biondii HOM05D007543 ORTHO05D009555 7.7e-07 58.2 68 50.0
Sopen09g034130 Solanum pennellii HOM05D007543 ORTHO05D009555 7.7e-07 58.2 52 57.7
Potri.010G061000 Populus trichocarpa HOM05D007543 ORTHO05D009555 5.0e-06 55.5 47 55.3


User provided reference genes

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