Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 0.0e+00 1375.9 789 100.0
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 0.0e+00 1151.0 792 81.3
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 0.0e+00 1130.2 794 84.5
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 0.0e+00 1119.4 792 84.0
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.8e-305 1052.4 975 65.2
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 8.1e-234 814.3 807 66.9
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.8e-220 770.0 819 64.3
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 7.0e-193 678.3 817 55.0
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.5e-179 634.0 825 53.5
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 2.0e-179 633.6 827 53.7
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.7e-178 630.6 805 54.8
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 6.6e-175 618.6 832 52.5
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.2e-165 587.8 807 52.0
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 3.6e-165 586.3 891 49.9
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.2e-162 577.0 809 49.8
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-159 567.0 806 49.9
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 3.0e-159 566.6 814 49.8
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 8.6e-159 565.1 821 49.8
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.2e-157 561.2 833 50.9
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.3e-156 557.0 812 48.8
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 3.1e-156 556.6 822 51.8
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 9.8e-155 551.6 819 53.5
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.7e-154 549.7 808 48.8
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.4e-153 547.7 811 48.1
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.5e-152 543.1 805 48.8
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 8.6e-151 538.5 806 52.2
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.3e-150 536.6 807 47.3
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 2.3e-148 530.4 828 47.1
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 5.2e-148 529.3 819 51.2
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 5.2e-148 529.3 815 46.7
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 6.8e-148 528.9 814 51.7
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.7e-146 524.2 822 50.1
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.2e-146 523.9 803 46.6
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 4.1e-145 519.6 820 46.7
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 3.5e-144 516.5 843 48.5
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 5.1e-143 512.7 837 45.9
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.6e-142 509.2 793 51.8
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 9.5e-142 508.4 667 54.1
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.4e-140 503.8 842 48.1
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 1.2e-139 501.5 830 46.1
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.0e-139 500.7 810 45.8
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 4.9e-138 496.1 801 49.4
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.4e-137 494.6 770 46.2
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 9.2e-137 491.9 687 53.9
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.6e-136 491.1 804 50.0
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 7.8e-136 488.8 818 45.6
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.3e-135 488.0 840 45.4
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.7e-135 487.6 836 45.3
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.0e-135 486.9 769 46.2
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.5e-134 483.8 828 44.8
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.8e-133 480.3 821 47.6
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.1e-132 478.4 842 48.8
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 1.4e-132 478.0 828 44.3
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.4e-132 477.2 812 46.1
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 4.4e-131 473.0 830 44.6
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 5.8e-131 472.6 824 44.9
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 6.4e-130 469.2 813 44.8
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.4e-130 468.8 823 44.0
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.5e-128 463.4 820 43.7
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.0e-127 461.8 850 46.9
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 3.9e-127 459.9 803 45.8
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.9e-127 459.9 803 46.6
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 5.1e-127 459.5 825 49.2
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-124 451.1 805 46.2
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 4.0e-124 449.9 818 47.7
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.3e-122 444.9 430 67.0
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 4.9e-122 443.0 842 46.1
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 8.4e-122 442.2 822 46.2
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.0e-119 435.3 459 58.8
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 7.4e-118 429.1 798 42.4
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.6e-117 427.9 822 42.5
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 2.8e-117 427.2 823 41.9
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 6.4e-114 416.0 814 44.6
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 6.4e-114 416.0 835 45.5
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.0e-111 408.7 818 42.8
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 3.3e-110 403.7 821 44.2
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 7.4e-110 402.5 796 45.0
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.6e-109 401.4 825 43.4
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 9.0e-108 395.6 812 40.1
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 2.9e-106 390.6 828 40.8
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 2.9e-106 390.6 793 43.6
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 4.9e-106 389.8 828 43.6
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 1.1e-105 388.7 808 40.1
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.9e-105 387.9 778 44.6
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 4.2e-105 386.7 814 42.5
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 2.1e-104 384.4 810 45.6
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 4.6e-104 383.3 659 49.5
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 6.7e-103 379.4 560 52.1
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 1.1e-102 378.6 813 40.1
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 4.3e-102 376.7 820 44.0
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.3e-101 375.2 853 38.7
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 3.7e-101 373.6 834 38.6
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 4.1e-100 370.2 810 43.8
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.6e-99 367.5 815 43.9
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 3.8e-98 363.6 810 42.5
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 6.5e-98 362.8 699 44.8
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 3.2e-97 360.5 797 42.9
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 9.4e-97 359.0 818 39.5
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 2.0e-94 351.3 815 42.1
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.3e-93 348.6 828 42.6
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-92 345.5 635 45.8
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 2.6e-91 340.9 806 41.3
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 2.2e-90 337.8 804 42.7
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 2.2e-90 337.8 408 51.7
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.8e-90 337.0 874 37.4
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 6.5e-90 336.3 661 45.7
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 6.5e-90 336.3 815 41.6
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 1.1e-89 335.5 782 43.4
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.2e-88 332.0 799 40.9
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.8e-87 328.2 861 40.9
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.3e-87 327.8 632 47.0
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.7e-86 323.2 824 41.3
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.7e-85 321.6 796 36.3
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.5e-83 315.1 834 41.5
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 3.5e-83 313.9 808 40.8
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.3e-82 312.0 816 41.7
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 2.2e-82 311.2 808 41.1
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.2e-82 311.2 769 37.1
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 1.5e-81 308.5 582 46.4
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 4.2e-81 307.0 565 48.1
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 7.2e-81 306.2 808 39.0
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 7.2e-81 306.2 469 52.7
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 1.6e-80 305.1 811 40.4
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 2.1e-80 304.7 567 48.3
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 8.0e-80 302.8 570 45.4
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.8e-79 301.6 822 39.1
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.7e-77 295.0 570 46.8
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 5.3e-76 290.0 565 46.2
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 2.2e-74 284.6 826 37.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 8.5e-74 282.7 788 34.6
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 3.2e-73 280.8 296 57.1
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 4.2e-73 280.4 622 44.7
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 5.4e-60 236.9 575 38.6
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.7e-56 223.8 844 32.5
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.0e-55 222.6 596 38.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 8.6e-50 203.0 354 50.8
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 5.2e-47 193.7 477 39.0
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 2.0e-43 181.8 678 33.5
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 2.7e-43 181.4 171 59.1
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.6e-40 171.0 434 35.0
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.4e-36 159.1 112 72.3
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.2e-35 156.0 422 32.5
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 8.6e-34 149.8 419 31.0
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 5.6e-33 147.1 100 82.0
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 7.3e-33 146.7 388 43.3
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.4e-31 142.5 695 28.8
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 3.1e-31 141.4 374 36.9
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.9e-29 134.0 92 77.2
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 1.1e-28 132.9 113 62.8
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.5e-27 127.9 170 51.2
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 5.2e-23 114.0 643 26.9
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 2.1e-19 102.1 230 38.3
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 6.0e-19 100.5 392 26.8
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-18 99.4 68 79.4
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.3e-17 94.7 66 75.8
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 8.1e-16 90.1 55 78.2
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.4e-15 89.4 76 59.2
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 9.0e-15 86.7 557 26.8
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 7.6e-14 83.6 62 71.0
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 9.9e-14 83.2 58 77.6
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-13 82.4 55 80.0
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.9e-13 81.6 57 77.2
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.8e-13 81.3 56 78.6
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.8e-13 81.3 55 80.0
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 2.1e-11 75.5 103 46.6
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.5e-11 74.7 48 81.2
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.6e-11 74.3 59 76.3
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.6e-11 74.3 48 81.2
Gohir.A02G090400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-10 72.8 67 65.7
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-10 72.4 48 79.2
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-10 72.4 59 74.6
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.3e-10 72.0 59 72.9
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 3.0e-10 71.6 76 51.3
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.1e-10 70.9 47 78.7
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 6.6e-10 70.5 57 66.7
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.6e-10 70.5 50 74.0
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.6e-10 70.5 50 74.0
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 5.6e-09 67.4 84 52.4
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 8.1e-08 63.5 57 66.7
HPP92_026453 Vanilla planifolia HOM05D003628 ORTHO05D004253 3.4e-06 58.2 58 62.1


User provided reference genes

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