Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396211 Rosa chinensis HOM05D009478 ORTHO05D010213 1.1e-298 1029.2 536 100.0
FAN23G2567 Fragaria x ananassa HOM05D009478 ORTHO05D010213 3.5e-196 688.7 538 69.5
FAN01G2101 Fragaria x ananassa HOM05D009478 ORTHO05D010213 3.1e-192 675.6 537 68.5
FAN13G2842 Fragaria x ananassa HOM05D009478 ORTHO05D010213 3.8e-158 562.4 533 60.8
FAN01G2716 Fragaria x ananassa HOM05D009478 ORTHO05D010213 2.5e-117 426.8 395 62.0
FAN19G2687 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.6e-108 397.5 458 53.7
FvH4_6g25720 Fragaria vesca HOM05D009478 ORTHO05D010213 6.1e-108 395.6 297 70.7
FAN09G2654 Fragaria x ananassa HOM05D009478 ORTHO05D010213 9.8e-98 361.7 414 52.7
FAN09G0089 Fragaria x ananassa HOM05D009478 ORTHO05D010213 7.3e-93 345.5 393 54.5
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.4e-80 304.7 178 88.2
FvH4_1g27812 Fragaria vesca HOM05D009478 ORTHO05D010213 6.4e-73 279.3 232 61.6
FAN19G2561 Fragaria x ananassa HOM05D009478 ORTHO05D010213 7.1e-72 275.8 205 68.8
FAN02G4237 Fragaria x ananassa HOM05D009478 ORTHO05D010213 3.5e-71 273.5 245 62.9
FAN23G0896 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.1e-69 268.5 238 61.8
RcHm_v2.0_Chr3g0451001 Rosa chinensis HOM05D009478 ORTHO05D010213 5.3e-59 233.0 362 41.7
RcHm_v2.0_Chr6g0268141 Rosa chinensis HOM05D009478 ORTHO05D010213 1.0e-54 218.8 334 39.2
RcHm_v2.0_Chr7g0189591 Rosa chinensis HOM05D009478 ORTHO05D010213 1.5e-53 214.9 334 38.6
FvH4_1g27770 Fragaria vesca HOM05D009478 ORTHO05D010213 4.5e-50 203.4 218 53.7
FAN09G2456 Fragaria x ananassa HOM05D004096 ORTHO05D010213 4.9e-49 199.9 314 39.2
FvH4_2g25151 Fragaria vesca HOM05D004096 ORTHO05D010213 5.5e-48 196.4 440 30.9
FAN05G0726 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.9e-45 188.0 184 59.8
FvH4_6g40321 Fragaria vesca HOM05D004096 ORTHO05D010213 3.7e-44 183.7 431 30.2
FvH4_3g23130 Fragaria vesca HOM05D009478 ORTHO05D010213 7.1e-40 169.5 142 64.1
FvH4_4g21890 Fragaria vesca HOM05D009478 ORTHO05D010213 2.3e-38 164.5 142 63.4
FvH4_4g14090 Fragaria vesca HOM05D009478 ORTHO05D010213 8.7e-38 162.5 143 63.6
FvH4_3g37244 Fragaria vesca HOM05D004096 ORTHO05D010213 9.7e-37 159.1 275 34.2
FvH4_2g09470 Fragaria vesca HOM05D004096 ORTHO05D010213 2.8e-36 157.5 241 35.3
FAN14G2992 Fragaria x ananassa HOM05D004096 ORTHO05D010213 4.1e-35 153.7 253 35.6
FvH4_6g40680 Fragaria vesca HOM05D004096 ORTHO05D010213 7.6e-34 149.4 279 33.3
FAN17G0441 Fragaria x ananassa HOM05D004096 ORTHO05D010213 7.6e-34 149.4 275 33.1
FvH4_4g16060 Fragaria vesca HOM05D009478 ORTHO05D010213 1.3e-33 148.7 312 32.7
FAN18G1768 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.3e-33 148.7 279 33.0
FAN03G1232 Fragaria x ananassa HOM05D004096 ORTHO05D010213 3.2e-32 144.1 239 34.3
RcHm_v2.0_Chr3g0478081 Rosa chinensis HOM05D004096 ORTHO05D000898 3.2e-32 144.1 290 33.1
FAN23G0656 Fragaria x ananassa HOM05D004096 ORTHO05D010213 9.3e-32 142.5 253 34.8
FAN13G2044 Fragaria x ananassa HOM05D004096 ORTHO05D010213 3.0e-30 137.5 297 31.0
FAN13G3102 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.9e-29 134.8 297 30.6
FAN28G1999 Fragaria x ananassa HOM05D004096 ORTHO05D010213 7.4e-29 132.9 316 30.1
FAN11G1281 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.5e-26 125.2 108 63.0
RcHm_v2.0_Chr4g0432021 Rosa chinensis HOM05D009478 ORTHO05D010213 4.5e-26 123.6 236 32.6
FAN16G2434 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.0e-25 122.5 246 34.1
FAN05G1382 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.3e-25 122.1 282 32.3
FAN20G0479 Fragaria x ananassa HOM05D004096 ORTHO05D025475 5.5e-24 116.7 278 25.9
FAN23G0071 Fragaria x ananassa HOM05D010142 ORTHO05D012232 5.5e-24 116.7 254 26.8
FAN16G1984 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.2e-23 115.5 254 26.8
FAN26G1477 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.6e-23 115.2 274 29.2
FAN12G2690 Fragaria x ananassa HOM05D006673 ORTHO05D008458 2.7e-23 114.4 89 67.4
FAN25G0938 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.8e-22 111.7 294 29.9
RcHm_v2.0_Chr6g0268131 Rosa chinensis HOM05D010142 ORTHO05D012232 1.8e-22 111.7 284 26.4
FAN17G2733 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.3e-22 111.3 155 38.7
FAN27G1058 Fragaria x ananassa HOM05D004096 ORTHO05D010213 8.8e-22 109.4 165 35.2
FAN14G0448 Fragaria x ananassa HOM05D010142 ORTHO05D012232 2.0e-21 108.2 229 27.1
FAN09G4807 Fragaria x ananassa HOM05D004096 ORTHO05D029602 3.3e-21 107.5 253 27.7
FAN10G0034 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.7e-21 106.7 145 42.1
FAN05G5253 Fragaria x ananassa HOM05D010142 ORTHO05D012232 9.7e-21 105.9 229 26.6
FAN05G4774 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.3e-20 105.5 254 26.4
FvH4_c19g00020 Fragaria vesca HOM05D004096 ORTHO05D010213 1.4e-19 102.1 280 31.1
FvH4_c19g00030 Fragaria vesca HOM05D011469 ORTHO05D014217 1.8e-19 101.7 231 28.1
FvH4_1g25490 Fragaria vesca HOM05D011469 ORTHO05D014217 4.1e-19 100.5 231 27.7
FAN12G0255 Fragaria x ananassa HOM05D004096 ORTHO05D035535 5.3e-19 100.1 255 29.8
FvH4_6g25711 Fragaria vesca HOM05D009478 ORTHO05D010213 1.2e-18 99.0 96 58.3
FAN14G2416 Fragaria x ananassa HOM05D009478 ORTHO05D010213 2.2e-17 94.7 87 63.2
FAN02G3705 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.1e-16 92.4 229 24.5
FAN05G0506 Fragaria x ananassa HOM05D009478 ORTHO05D010213 1.1e-16 92.4 81 56.8
FAN16G2510 Fragaria x ananassa HOM05D004096 ORTHO05D010213 7.2e-16 89.7 258 26.7
FvH4_4g07721 Fragaria vesca HOM05D004096 ORTHO05D010213 9.4e-16 89.4 127 33.9
FAN17G2488 Fragaria x ananassa HOM05D004096 ORTHO05D010213 2.7e-15 87.8 272 26.1
Prupe.5G238300 Prunus persica HOM05D004096 ORTHO05D000898 2.7e-15 87.8 284 25.4
FAN13G2291 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.1e-15 86.7 345 27.8
Prupe.4G261000 Prunus persica HOM05D066118 ORTHO05D050597 1.0e-14 85.9 315 26.7
FAN04G0203 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.4e-14 85.5 160 33.8
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.4e-14 85.5 243 25.9
FAN16G0074 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.3e-14 84.7 228 28.1
FAN06G3212 Fragaria x ananassa HOM05D004096 ORTHO05D010823 8.8e-14 82.8 248 25.0
FvH4_7g10251 Fragaria vesca HOM05D004096 ORTHO05D029602 1.1e-13 82.4 253 24.1
FAN25G0030 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.3e-13 80.9 282 28.0
FvH4_2g27931 Fragaria vesca HOM05D004096 ORTHO05D029602 5.7e-13 80.1 253 24.1
FvH4_5g33480 Fragaria vesca HOM05D004096 ORTHO05D046227 1.7e-12 78.6 155 32.9
FAN20G1793 Fragaria x ananassa HOM05D021144 ORTHO05D022601 2.8e-12 77.8 126 38.9
FAN22G0991 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.3e-12 76.6 131 35.1
FAN17G1842 Fragaria x ananassa HOM05D008674 ORTHO05D000898 1.8e-11 75.1 269 25.3
FAN05G1903 Fragaria x ananassa HOM05D017852 ORTHO05D010823 2.4e-11 74.7 264 24.2
FAN05G1459 Fragaria x ananassa HOM05D010142 ORTHO05D012232 3.1e-11 74.3 159 26.4
FvH4_4g09520 Fragaria vesca HOM05D004096 ORTHO05D035535 7.0e-11 73.2 154 31.8
FAN04G2869 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.6e-10 72.0 161 34.2
FAN18G3521 Fragaria x ananassa HOM05D011469 ORTHO05D014217 2.6e-10 71.2 149 29.5
FAN25G3308 Fragaria x ananassa HOM05D010142 ORTHO05D012232 2.6e-10 71.2 295 23.4
FAN12G1579 Fragaria x ananassa HOM05D004096 ORTHO05D035535 4.5e-10 70.5 135 36.3
FvH4_7g31231 Fragaria vesca HOM05D017852 ORTHO05D010823 5.9e-10 70.1 264 23.5
FAN05G3432 Fragaria x ananassa HOM05D010142 ORTHO05D012232 7.7e-10 69.7 197 24.9
FAN24G2093 Fragaria x ananassa HOM05D004096 ORTHO05D029602 1.3e-09 68.9 162 27.2
FvH4_6g07180 Fragaria vesca HOM05D011469 ORTHO05D014217 1.7e-09 68.6 154 27.9
FAN18G0249 Fragaria x ananassa HOM05D004096 ORTHO05D046227 1.7e-09 68.6 67 44.8
FAN03G2350 Fragaria x ananassa HOM05D007993 ORTHO05D000898 2.2e-09 68.2 227 26.4
FAN13G1902 Fragaria x ananassa HOM05D011469 ORTHO05D014217 2.2e-09 68.2 179 27.9
FAN13G0573 Fragaria x ananassa HOM05D011469 ORTHO05D014217 3.8e-09 67.4 149 28.9
FvH4_1g25481 Fragaria vesca HOM05D004096 ORTHO05D010213 5.0e-09 67.0 86 40.7
FvH4_4g03329 Fragaria vesca HOM05D004096 ORTHO05D010213 5.0e-09 67.0 86 40.7
FAN09G4395 Fragaria x ananassa HOM05D004096 ORTHO05D025475 5.0e-09 67.0 210 24.3
FAN14G0071 Fragaria x ananassa HOM05D007993 ORTHO05D000898 5.0e-09 67.0 273 25.3
FvH4_6g28332 Fragaria vesca HOM05D017852 ORTHO05D010823 6.5e-09 66.6 219 24.2
FAN15G2942 Fragaria x ananassa HOM05D004096 ORTHO05D010213 8.5e-09 66.2 455 24.4
FvH4_2g07612 Fragaria vesca HOM05D007993 ORTHO05D012371 1.5e-08 65.5 146 29.5
FvH4_2g27910 Fragaria vesca HOM05D004096 ORTHO05D025475 1.9e-08 65.1 154 29.2
FAN08G1236 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.9e-08 65.1 226 24.3
FAN25G1002 Fragaria x ananassa HOM05D010142 ORTHO05D012232 1.9e-08 65.1 330 24.5
FAN27G2266 Fragaria x ananassa HOM05D017852 ORTHO05D010823 1.9e-08 65.1 264 24.2
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 2.5e-08 64.7 204 23.0
FAN07G1300 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.2e-08 63.9 228 25.4
FAN18G1971 Fragaria x ananassa HOM05D004096 ORTHO05D010823 4.2e-08 63.9 243 24.3
FAN27G2741 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.2e-08 63.9 253 25.7
Medtr4g007830 Medicago truncatula HOM05D011457 ORTHO05D007788 5.5e-08 63.5 232 25.9
FAN28G1879 Fragaria x ananassa HOM05D008674 ORTHO05D012371 9.4e-08 62.8 171 26.3
Prupe.2G063700 Prunus persica HOM05D017852 ORTHO05D012232 9.4e-08 62.8 145 29.0
Dinv01422 Davidia involucrata HOM05D008396 ORTHO05D000898 1.2e-07 62.4 184 28.3
Dinv09269 Davidia involucrata HOM05D008396 ORTHO05D000898 1.2e-07 62.4 191 26.2
FAN28G1618 Fragaria x ananassa HOM05D007993 ORTHO05D000898 1.2e-07 62.4 135 31.9
FvH4_7g08580 Fragaria vesca HOM05D021144 ORTHO05D022601 2.1e-07 61.6 217 30.0
FAN22G1171 Fragaria x ananassa HOM05D010142 ORTHO05D012232 2.1e-07 61.6 160 23.8
FAN04G1460 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.7e-07 60.5 135 31.1
FAN19G1351 Fragaria x ananassa HOM05D007993 ORTHO05D000898 4.7e-07 60.5 139 30.9
Potri.017G019466 Populus trichocarpa HOM05D000030 ORTHO05D000009 4.7e-07 60.5 272 22.4
FAN20G1392 Fragaria x ananassa HOM05D004096 ORTHO05D010213 6.1e-07 60.1 159 28.9
FAN21G3088 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.1e-07 60.1 123 30.1
FAN28G0966 Fragaria x ananassa HOM05D007993 ORTHO05D000898 6.1e-07 60.1 228 23.7
FAN02G1861 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.0e-06 59.3 296 23.6
FAN24G1357 Fragaria x ananassa HOM05D004096 ORTHO05D012232 1.0e-06 59.3 162 30.9
FAN25G0749 Fragaria x ananassa HOM05D010969 ORTHO05D010213 1.0e-06 59.3 154 22.7
FvH4_7g07131 Fragaria vesca HOM05D021144 ORTHO05D022601 1.8e-06 58.5 217 29.5
FvH4_1g09630 Fragaria vesca HOM05D004096 ORTHO05D045665 3.0e-06 57.8 113 31.9
FvH4_1g23642 Fragaria vesca HOM05D017852 ORTHO05D010823 3.0e-06 57.8 144 27.1
RcHm_v2.0_Chr7g0189601 Rosa chinensis HOM05D010142 ORTHO05D012232 3.0e-06 57.8 134 23.9
GSVIVG01023574001 Vitis vinifera HOM05D008451 ORTHO05D009908 5.2e-06 57.0 153 22.2
FAN13G0415 Fragaria x ananassa HOM05D007993 ORTHO05D000898 6.7e-06 56.6 122 31.1
GSVIVG01018225001 Vitis vinifera HOM05D008451 ORTHO05D009908 6.7e-06 56.6 153 22.9
GSVIVG01037305001 Vitis vinifera HOM05D008451 ORTHO05D009908 6.7e-06 56.6 153 21.6
FAN25G2962 Fragaria x ananassa HOM05D004096 ORTHO05D010213 8.8e-06 56.2 84 39.3


User provided reference genes

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