Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 2.3e-126 455.7 246 100.0
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 1.3e-108 396.7 248 89.5
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.8e-108 395.6 248 89.5
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 4.8e-108 394.8 248 89.1
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.0e-106 389.4 248 88.7
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.3e-105 386.7 248 88.3
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 1.2e-74 283.9 255 70.6
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 5.9e-74 281.6 262 67.6
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.4e-59 233.8 232 60.8
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 2.7e-58 229.6 233 56.2
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 7.3e-56 221.5 236 57.6
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 2.1e-55 219.9 233 54.9
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 1.0e-54 217.6 235 57.4
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 1.0e-54 217.6 234 60.7
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 3.1e-54 216.1 235 53.6
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 4.0e-54 215.7 233 54.9
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 4.4e-53 212.2 228 53.1
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 1.3e-52 210.7 231 53.2
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 5.4e-51 205.3 237 54.0
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 2.0e-50 203.4 270 49.3
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 3.3e-48 196.1 233 54.9
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 4.3e-48 195.7 236 55.5
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 7.3e-48 194.9 233 54.5
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 1.6e-47 193.7 239 52.7
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 2.8e-47 193.0 220 53.2
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 1.4e-46 190.7 221 51.6
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 5.2e-46 188.7 193 59.1
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 6.8e-46 188.3 224 53.1
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 1.2e-45 187.6 220 52.7
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 1.2e-45 187.6 227 49.3
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.2e-45 187.6 223 50.7
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 4.4e-45 185.7 198 55.1
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 4.4e-45 185.7 198 54.5
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 5.8e-45 185.3 198 54.5
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.9e-44 183.0 206 51.9
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 4.9e-44 182.2 196 54.6
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 6.4e-44 181.8 214 52.8
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 1.1e-43 181.0 235 50.2
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.4e-43 180.6 198 51.5
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 1.9e-43 180.3 219 51.1
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 2.4e-43 179.9 260 46.2
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 3.2e-43 179.5 254 46.9
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 3.2e-43 179.5 222 50.0
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 7.1e-43 178.3 215 52.6
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 7.1e-43 178.3 197 52.3
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 2.1e-42 176.8 213 50.2
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.1e-42 176.8 200 52.0
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 1.3e-41 174.1 216 48.6
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.3e-41 174.1 235 47.7
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 3.0e-41 172.9 233 47.6
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 8.6e-41 171.4 204 52.0
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 1.1e-40 171.0 237 45.1
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 3.3e-40 169.5 240 47.1
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 3.3e-40 169.5 233 47.6
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 4.3e-40 169.1 240 47.1
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 5.6e-40 168.7 243 45.3
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 1.6e-39 167.2 244 44.7
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 2.1e-39 166.8 227 48.0
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 2.8e-39 166.4 231 45.0
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 4.7e-39 165.6 235 45.1
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 1.1e-38 164.5 198 51.0
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 1.8e-38 163.7 222 49.1
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 2.3e-38 163.3 277 43.7
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 2.3e-38 163.3 235 45.1
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 4.0e-38 162.5 224 47.3
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 5.2e-38 162.2 224 47.3
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 8.9e-38 161.4 239 42.7
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 1.2e-37 161.0 235 43.0
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.5e-37 160.6 222 46.4
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 4.4e-37 159.1 241 46.5
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 4.4e-37 159.1 184 55.4
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 4.4e-37 159.1 231 43.7
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 5.8e-37 158.7 232 44.4
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 5.8e-37 158.7 233 47.2
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 2.9e-36 156.4 225 44.0
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 5.4e-35 152.1 235 43.0
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 9.2e-35 151.4 233 41.6
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 6.0e-34 148.7 235 41.7
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 3.0e-33 146.4 223 42.6
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 3.9e-33 146.0 203 44.3
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 1.1e-32 144.4 233 40.8
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 1.5e-32 144.1 247 39.7
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 4.3e-32 142.5 232 42.7
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 8.9e-30 134.8 193 46.6
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 1.2e-29 134.4 233 40.8
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 5.8e-29 132.1 136 57.4
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 1.7e-28 130.6 240 38.8
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 8.4e-28 128.3 172 47.1
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 1.4e-27 127.5 113 61.1
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 1.9e-27 127.1 166 50.0
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 2.4e-27 126.7 187 45.5
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 3.2e-27 126.3 243 40.7
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 3.2e-27 126.3 231 40.7
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 3.2e-27 126.3 201 45.3
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 2.5e-24 116.7 105 56.2
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 5.6e-24 115.5 255 38.8
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 7.3e-24 115.2 110 53.6
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 3.6e-23 112.8 222 36.9
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 8.1e-23 111.7 258 38.8
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 1.4e-22 110.9 222 38.7
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 1.4e-22 110.9 255 38.4
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 1.4e-22 110.9 255 38.4
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 1.4e-22 110.9 222 38.7
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 1.4e-22 110.9 255 38.4
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 2.4e-22 110.2 238 39.9
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 2.4e-22 110.2 105 56.2
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 4.0e-22 109.4 221 38.5
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 9.0e-22 108.2 179 41.3
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 9.0e-22 108.2 222 38.3
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.2e-21 107.8 252 38.5
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 1.5e-21 107.5 193 39.9
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 2.0e-21 107.1 219 39.3
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.6e-21 106.7 239 37.2
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 4.5e-21 105.9 203 39.4
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 4.5e-21 105.9 242 38.4
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 4.5e-21 105.9 231 38.1
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 7.6e-21 105.1 218 39.4
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.3e-20 104.4 219 39.3
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 3.8e-20 102.8 177 35.6
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 1.2e-18 97.8 204 38.2
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 4.6e-18 95.9 112 51.8
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 6.0e-18 95.5 110 51.8
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 7.9e-18 95.1 203 32.0
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.3e-17 94.4 112 51.8
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.1e-16 91.3 250 34.8
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.9e-16 90.5 172 36.6
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.8e-15 86.7 239 34.3
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 2.6e-13 80.1 121 43.0
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 6.4e-12 75.5 140 40.0
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 3.9e-09 66.2 133 32.3
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.0e-06 56.2 146 32.2


User provided reference genes

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