Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0395761 Rosa chinensis HOM05D000539 ORTHO05D000233 2.0e-89 332.8 217 100.0
RcHm_v2.0_Chr5g0072981 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-31 140.6 211 46.4
RcHm_v2.0_Chr4g0393861 Rosa chinensis HOM05D000539 ORTHO05D000233 2.8e-27 126.3 197 44.7
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 3.1e-26 122.9 197 45.2
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 1.7e-24 117.1 205 41.0
RcHm_v2.0_Chr2g0102081 Rosa chinensis HOM05D000539 ORTHO05D000233 2.5e-23 113.2 202 42.6
RcHm_v2.0_Chr1g0340601 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-22 110.5 221 40.7
FAN13G3216 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-21 106.7 70 67.1
FAN16G0584 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-21 106.7 70 67.1
FAN24G2468 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-21 106.7 70 67.1
FAN28G1622 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-21 106.7 70 67.1
FAN17G3107 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.9e-21 105.9 70 67.1
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 5.1e-21 105.5 196 57.1
FvH4_3g31624 Fragaria vesca HOM05D000539 ORTHO05D000592 1.1e-20 104.4 73 64.4
FAN17G0771 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.1e-20 104.4 70 65.7
FAN26G0195 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.3e-20 102.8 69 66.7
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 5.7e-20 102.1 197 54.8
FAN18G3492 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.8e-19 99.8 69 65.2
FAN25G0088 Fragaria x ananassa HOM05D000539 ORTHO05D000233 6.3e-19 98.6 231 44.6
FAN09G2875 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.8e-18 97.1 204 49.5
RcHm_v2.0_Chr5g0045841 Rosa chinensis HOM05D000539 ORTHO05D000233 1.8e-18 97.1 209 39.7
FAN15G1280 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.1e-18 95.9 69 65.2
FvH4_1g25001 Fragaria vesca HOM05D000539 ORTHO05D000233 9.1e-18 94.7 76 60.5
FvH4_3g30982 Fragaria vesca HOM05D000539 ORTHO05D000233 9.1e-18 94.7 76 60.5
FAN02G2878 Fragaria x ananassa HOM05D000539 ORTHO05D000233 9.1e-18 94.7 76 60.5
FAN02G4277 Fragaria x ananassa HOM05D000539 ORTHO05D000233 9.1e-18 94.7 76 60.5
FAN03G0903 Fragaria x ananassa HOM05D000539 ORTHO05D000233 9.1e-18 94.7 69 60.9
FvH4_4g09822 Fragaria vesca HOM05D000107 ORTHO05D000062 3.4e-17 92.8 76 60.5
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 4.5e-17 92.4 64 70.3
FvH4_1g20121 Fragaria vesca HOM05D000539 ORTHO05D000233 5.9e-17 92.0 180 46.7
FvH4_7g09681 Fragaria vesca HOM05D000539 ORTHO05D000233 7.7e-17 91.7 76 59.2
FvH4_1g28483 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-16 90.5 76 57.9
FvH4_2g21272 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-16 90.5 76 57.9
FvH4_3g14251 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-16 90.5 76 57.9
FvH4_6g32742 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-16 90.5 75 60.0
FAN19G0390 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.9e-16 89.7 76 56.6
FvH4_3g31713 Fragaria vesca HOM05D000539 ORTHO05D000233 6.5e-16 88.6 76 57.9
FAN26G3042 Fragaria x ananassa HOM05D000539 ORTHO05D000233 6.5e-16 88.6 76 57.9
RcHm_v2.0_Chr2g0095191 Rosa chinensis HOM05D000107 ORTHO05D000062 6.5e-16 88.6 213 35.2
RcHm_v2.0_Chr2g0123111 Rosa chinensis HOM05D000539 ORTHO05D000233 6.5e-16 88.6 64 67.2
FvH4_3g23522 Fragaria vesca HOM05D000539 ORTHO05D000233 8.5e-16 88.2 75 57.3
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 3.2e-15 86.3 83 53.0
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 3.2e-15 86.3 83 53.0
FAN07G2619 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.5e-15 85.5 65 63.1
FAN10G0065 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.5e-15 85.5 65 63.1
FAN11G2362 Fragaria x ananassa HOM05D000539 ORTHO05D000592 5.5e-15 85.5 65 63.1
FAN22G1565 Fragaria x ananassa HOM05D000539 ORTHO05D000233 9.4e-15 84.7 58 62.1
RcHm_v2.0_Chr3g0481681 Rosa chinensis HOM05D000539 ORTHO05D000233 1.2e-14 84.3 77 55.8
FvH4_7g16902 Fragaria vesca HOM05D000107 ORTHO05D035324 1.6e-14 84.0 230 34.3
FvH4_6g53023 Fragaria vesca HOM05D000539 ORTHO05D000233 7.9e-14 81.6 204 36.8
RcHm_v2.0_Chr4g0414231 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-13 81.3 99 47.5
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 1.8e-13 80.5 187 45.5
RcHm_v2.0_Chr3g0462471 Rosa chinensis HOM05D000539 ORTHO05D000233 2.3e-13 80.1 74 56.8
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 3.0e-13 79.7 197 35.5
RcHm_v2.0_Chr6g0267111 Rosa chinensis HOM05D000539 ORTHO05D000233 3.9e-13 79.3 85 51.8
FvH4_3g18051 Fragaria vesca HOM05D000539 ORTHO05D000592 5.1e-13 79.0 202 36.1
RcHm_v2.0_Chr5g0082411 Rosa chinensis HOM05D000539 ORTHO05D000233 6.7e-13 78.6 74 55.4
RcHm_v2.0_Chr4g0401831 Rosa chinensis HOM05D000539 ORTHO05D000233 4.4e-12 75.9 74 51.4
FvH4_2g07752 Fragaria vesca HOM05D000539 ORTHO05D000233 1.3e-11 74.3 199 44.2
FvH4_4g15803 Fragaria vesca HOM05D000539 ORTHO05D000233 4.8e-11 72.4 63 55.6
FvH4_6g12902 Fragaria vesca HOM05D000539 ORTHO05D000233 6.3e-11 72.0 64 54.7
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 8.2e-11 71.6 194 32.0
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 1.4e-10 70.9 72 51.4
FvH4_5g20921 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-10 70.9 74 50.0
RcHm_v2.0_Chr4g0391901 Rosa chinensis HOM05D000539 ORTHO05D000233 6.9e-10 68.6 69 53.6
FvH4_3g26442 Fragaria vesca HOM05D000539 ORTHO05D000233 9.1e-10 68.2 74 47.3
FvH4_4g16571 Fragaria vesca HOM05D000539 ORTHO05D000233 9.1e-10 68.2 56 58.9
FAN25G1321 Fragaria x ananassa HOM05D000539 ORTHO05D000592 1.5e-09 67.4 69 50.7
RcHm_v2.0_Chr5g0072061 Rosa chinensis HOM05D000539 ORTHO05D000233 5.9e-09 65.5 88 43.2
MELO3C028618.2 Cucumis melo HOM05D007110 ORTHO05D000592 7.7e-09 65.1 92 37.0
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 7.7e-09 65.1 64 51.6
FAN08G2827 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.7e-09 65.1 193 34.7
FAN09G1168 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.7e-09 65.1 193 34.7
FAN10G1899 Fragaria x ananassa HOM05D000539 ORTHO05D000592 7.7e-09 65.1 193 34.7
MELO3C035597.2 Cucumis melo HOM05D007110 ORTHO05D000592 1.0e-08 64.7 77 41.6
FvH4_6g12431 Fragaria vesca HOM05D000539 ORTHO05D000233 1.0e-08 64.7 61 52.5
FAN18G1469 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.9e-08 63.2 65 50.8
FvH4_5g31943 Fragaria vesca HOM05D000539 ORTHO05D000233 3.8e-08 62.8 175 36.6
FAN11G1867 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.0e-08 62.4 76 43.4
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 8.5e-08 61.6 73 42.5
FvH4_5g33851 Fragaria vesca HOM05D000539 ORTHO05D000233 1.1e-07 61.2 67 43.3
RcHm_v2.0_Chr6g0271081 Rosa chinensis HOM05D000539 ORTHO05D000233 1.1e-07 61.2 61 47.5
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 1.4e-07 60.8 94 35.1
FvH4_3g32842 Fragaria vesca HOM05D000539 ORTHO05D000233 3.2e-07 59.7 63 47.6
FvH4_5g19271 Fragaria vesca HOM05D000539 ORTHO05D000233 3.2e-07 59.7 63 50.8
MELO3C034551.2 Cucumis melo HOM05D007110 ORTHO05D000233 4.2e-07 59.3 62 43.5
FvH4_3g14361 Fragaria vesca HOM05D000539 ORTHO05D000233 4.2e-07 59.3 63 50.8
FvH4_4g16176 Fragaria vesca HOM05D000539 ORTHO05D000233 4.2e-07 59.3 63 50.8
FvH4_7g02602 Fragaria vesca HOM05D000539 ORTHO05D000233 4.2e-07 59.3 63 50.8
FAN09G3363 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.2e-07 59.3 63 49.2
FAN11G1109 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.2e-07 59.3 63 50.8
FAN08G2176 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.5e-07 58.9 67 41.8
Prupe.6G193600 Prunus persica HOM05D000539 ORTHO05D000233 5.5e-07 58.9 63 42.9
FAN02G4002 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.2e-07 58.5 63 50.8
FAN21G0704 Fragaria x ananassa HOM05D000539 ORTHO05D000233 7.2e-07 58.5 63 49.2
FAN23G1195 Fragaria x ananassa HOM05D000723 ORTHO05D001760 1.2e-06 57.8 63 44.4
FAN24G3557 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.2e-06 57.8 63 49.2
Ciclev10007052m.g Citrus clementina HOM05D000616 ORTHO05D000233 1.6e-06 57.4 77 37.7
FAN03G1033 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.6e-06 57.4 80 42.5
FAN16G1830 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.6e-06 57.4 80 42.5
Ciclev10013461m.g Citrus clementina HOM05D000616 ORTHO05D000233 2.1e-06 57.0 77 37.7
MELO3C027932.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.1e-06 57.0 46 50.0
FAN06G1168 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.1e-06 57.0 63 49.2
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 2.7e-06 56.6 66 37.9
FAN07G2711 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.6e-06 56.2 80 41.2
FAN14G5321 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.6e-06 56.2 63 49.2
AUR62038589 Chenopodium quinoa HOM05D000107 ORTHO05D000233 4.7e-06 55.8 93 35.5
FAN04G3167 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.7e-06 55.8 80 42.5
RcHm_v2.0_Chr2g0147531 Rosa chinensis HOM05D000539 ORTHO05D000233 4.7e-06 55.8 30 86.7
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 6.1e-06 55.5 60 45.0
FvH4_2g18191 Fragaria vesca HOM05D000539 ORTHO05D000233 6.1e-06 55.5 57 52.6
FAN28G1329 Fragaria x ananassa HOM05D000723 ORTHO05D001760 6.1e-06 55.5 60 45.0
Prupe.6G157700 Prunus persica HOM05D000539 ORTHO05D000233 7.9e-06 55.1 67 43.3


User provided reference genes

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