Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 7.7e-243 843.6 484 100.0
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 3.5e-235 818.1 486 97.5
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 5.2e-207 724.5 485 88.0
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.6e-203 713.0 498 83.1
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 8.3e-197 690.6 488 83.6
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 4.6e-195 684.9 443 88.9
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 5.6e-193 677.9 487 80.9
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.4e-167 593.6 506 71.7
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 3.1e-167 592.4 501 73.3
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.2e-165 586.3 493 73.8
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 3.2e-164 582.4 484 74.6
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.2e-163 580.5 489 72.2
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.2e-163 580.5 490 72.7
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 7.4e-161 571.2 484 71.9
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.1e-159 567.4 495 72.5
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 2.0e-158 563.1 490 73.7
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 5.8e-158 561.6 490 73.5
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 2.9e-157 559.3 485 71.3
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 6.4e-157 558.1 487 70.8
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 8.4e-157 557.8 489 72.0
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.8e-154 550.1 489 70.3
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 3.3e-153 545.8 489 70.8
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.4e-151 540.4 489 72.4
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.0e-149 534.3 494 66.0
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 1.0e-149 534.3 493 66.1
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 1.4e-148 530.4 486 67.5
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 1.9e-148 530.0 486 69.3
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 1.6e-147 526.9 488 67.0
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 6.0e-147 525.0 484 66.5
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 7.9e-147 524.6 492 69.3
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 6.7e-146 521.5 487 68.4
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.5e-145 520.4 495 65.1
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 1.3e-144 517.3 487 69.8
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.6e-144 516.9 481 67.8
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 2.2e-144 516.5 497 66.8
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.2e-142 510.8 467 69.4
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 2.6e-142 509.6 485 66.4
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 2.2e-141 506.5 494 64.8
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.9e-141 506.1 509 64.8
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 2.7e-139 499.6 489 66.1
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.3e-138 496.5 503 66.2
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 3.9e-138 495.7 487 67.1
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 4.3e-137 492.3 581 57.0
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 2.2e-136 490.0 441 67.8
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 2.2e-136 490.0 495 66.1
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 5.3e-135 485.3 488 65.6
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 6.9e-135 485.0 437 68.0
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.9e-132 476.9 431 69.1
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.0e-130 471.1 509 63.1
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 5.1e-130 468.8 497 60.8
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.0e-129 466.8 491 65.0
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 1.4e-127 460.7 484 64.7
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.4e-127 460.7 467 61.2
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.4e-127 460.7 489 63.4
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.8e-127 460.3 485 63.7
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.4e-127 459.9 507 63.1
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.4e-127 459.9 484 63.0
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 3.1e-127 459.5 459 67.1
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.5e-126 457.2 502 59.8
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 6.5e-125 451.8 522 56.3
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 9.4e-124 448.0 519 61.1
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 1.4e-122 444.1 483 60.7
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 3.9e-122 442.6 493 62.1
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 5.2e-122 442.2 449 67.3
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 5.2e-122 442.2 428 67.8
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 4.4e-121 439.1 484 56.0
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 5.7e-121 438.7 533 54.2
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 9.7e-121 438.0 484 56.6
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 1.7e-120 437.2 488 62.1
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 2.2e-117 426.8 483 55.9
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 8.5e-117 424.9 412 67.2
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 8.5e-117 424.9 510 60.2
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 3.2e-116 422.9 445 61.8
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 9.4e-116 421.4 485 60.8
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.2e-115 421.0 466 59.0
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 2.3e-114 416.8 524 58.4
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 4.0e-114 416.0 429 64.8
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 4.4e-113 412.5 520 50.6
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 2.8e-112 409.8 485 55.3
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 4.1e-111 406.0 391 68.5
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 5.3e-111 405.6 484 54.8
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.9e-109 399.8 413 66.1
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.9e-108 397.1 482 57.5
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 9.4e-108 394.8 508 50.8
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 6.8e-106 388.7 484 52.3
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.5e-105 387.5 485 52.2
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 4.4e-105 386.0 489 51.3
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 4.8e-104 382.5 392 67.6
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.5e-97 360.9 485 54.6
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 8.3e-96 355.1 487 56.3
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 4.1e-95 352.8 352 69.6
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.6e-94 350.9 476 54.2
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 1.6e-94 350.9 476 54.2
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 1.6e-94 350.9 476 54.2
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 1.6e-94 350.9 477 52.8
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 1.6e-94 350.9 318 71.4
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 2.0e-94 350.5 483 55.5
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 3.5e-94 349.7 462 56.3
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 3.8e-93 346.3 482 54.8
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 2.6e-89 333.6 487 53.0
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 8.6e-85 318.5 361 59.3
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.1e-82 311.6 293 64.2
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 2.2e-80 303.9 246 69.9
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 1.2e-57 228.4 140 83.6
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.3e-56 224.9 176 68.2
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 3.9e-53 213.4 136 81.6
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 8.7e-53 212.2 140 75.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 9.6e-52 208.8 206 64.1
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.6e-51 208.0 178 69.1
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 2.8e-51 207.2 255 47.1
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.4e-50 204.9 162 66.0
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 2.4e-50 204.1 169 65.1
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 3.5e-46 190.3 161 62.1
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 4.6e-46 189.9 172 60.5
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 7.9e-46 189.1 161 63.4
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 1.1e-44 185.3 161 60.9
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 2.5e-39 167.5 260 40.4
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 5.5e-39 166.4 244 42.6
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 1.8e-37 161.4 163 55.8
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 7.4e-36 156.0 136 63.2
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 1.3e-35 155.2 161 60.9
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.5e-33 148.3 155 52.3
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.2e-32 144.4 106 72.6
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.2e-32 144.4 149 51.7
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 2.9e-32 144.1 199 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.2e-30 138.7 156 48.1
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 3.9e-29 133.7 102 75.5
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 6.7e-29 132.9 230 37.4
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 6.7e-29 132.9 118 66.9
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 5.7e-28 129.8 185 44.9
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 4.6e-22 110.2 74 75.7
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 2.5e-20 104.4 100 65.0
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 1.1e-18 99.0 87 66.7
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 3.4e-17 94.0 88 61.4
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.7e-16 91.7 111 55.9
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.4e-15 88.6 226 37.6
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 3.2e-15 87.4 110 70.9
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 5.5e-15 86.7 69 66.7
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 1.4e-13 82.0 128 44.5
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 4.4e-12 77.0 147 39.5
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 3.1e-10 70.9 67 62.7
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 7.0e-10 69.7 52 71.2
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-09 68.9 116 41.4
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 2.6e-09 67.8 48 72.9
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 3.5e-09 67.4 74 55.4
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 3.5e-09 67.4 76 53.9
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.0e-08 65.9 68 66.2
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.0e-08 63.5 70 48.6
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 2.5e-07 61.2 200 30.5
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 3.2e-07 60.8 49 65.3
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 9.4e-07 59.3 32 90.6
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 9.4e-07 59.3 105 41.9
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 2.1e-06 58.2 32 87.5
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 2.1e-06 58.2 32 87.5
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 2.1e-06 58.2 32 87.5
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 2.7e-06 57.8 54 61.1
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 4.7e-06 57.0 72 43.1


User provided reference genes

Program Settings