Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0395401 Rosa chinensis HOM05D008157 ORTHO05D009575 1.2e-59 233.0 124 100.0
FvH4_4g04630 Fragaria vesca HOM05D008157 ORTHO05D009575 1.9e-49 199.1 124 86.3
FAN12G3964 Fragaria x ananassa HOM05D008157 ORTHO05D009575 1.6e-48 196.1 124 84.7
Prupe.1G048400 Prunus persica HOM05D008157 ORTHO05D009575 5.1e-34 147.9 120 70.0
MD16G1226400 Malus domestica HOM05D008157 ORTHO05D009575 6.5e-29 131.0 120 63.3
FAN12G0895 Fragaria x ananassa HOM05D008157 ORTHO05D009575 1.1e-20 103.6 78 75.6
QL06p021011 Quercus lobata HOM05D008157 ORTHO05D009575 1.5e-20 103.2 124 54.8
Potri.008G172000 Populus trichocarpa HOM05D008157 ORTHO05D009575 3.2e-20 102.1 93 61.3
CANSAT78G1852 Cannabis sativa HOM05D008157 ORTHO05D009575 1.2e-19 100.1 122 54.9
Haze_11459 Corylus avellana HOM05D008157 ORTHO05D009575 8.0e-19 97.4 124 54.8
Sabra10G0041500 Salix brachista HOM05D008157 ORTHO05D009575 1.2e-17 93.6 93 58.1
Manes.03G158800 Manihot esculenta HOM05D008157 ORTHO05D009575 4.4e-17 91.7 119 50.4
Potri.010G065666 Populus trichocarpa HOM05D008157 ORTHO05D009575 5.7e-17 91.3 121 49.6
Sabra08G0131300 Salix brachista HOM05D008157 ORTHO05D009575 1.1e-15 87.0 123 47.2
Manes.15G045800 Manihot esculenta HOM05D008157 ORTHO05D009575 3.1e-15 85.5 112 48.2
Duzib151G0689 Durio zibethinus HOM05D008157 ORTHO05D009575 2.7e-14 82.4 121 47.9
Thecc.04G264100 Theobroma cacao HOM05D008157 ORTHO05D009575 7.7e-14 80.9 120 45.8
Atru.chr4.1914 Acer truncatum HOM05D008157 ORTHO05D009575 1.7e-13 79.7 133 46.6
CiPaw.02G106900 Carya illinoinensis HOM05D008157 ORTHO05D009575 1.7e-13 79.7 125 49.6
TAR365G0204 Trochodendron aralioides HOM05D008157 ORTHO05D009575 3.8e-13 78.6 126 44.4
CsaV3_3G011680 Cucumis sativus L. HOM05D008157 ORTHO05D009575 5.0e-13 78.2 91 49.5
Sed0015987 Sechium edule HOM05D008157 ORTHO05D009575 5.0e-13 78.2 117 40.2
TWI09G0993 Tripterygium wilfordii HOM05D008157 ORTHO05D009575 6.5e-13 77.8 124 41.1
ClCG05G003990 Citrullus lanatus HOM05D008157 ORTHO05D009575 8.5e-13 77.4 118 44.1
MELO3C006376.2 Cucumis melo HOM05D008157 ORTHO05D009575 2.5e-12 75.9 98 50.0
Dinv27113 Davidia involucrata HOM05D008157 ORTHO05D009575 3.2e-12 75.5 77 57.1
Gohir.A02G043000 Gossypium hirsutum HOM05D008157 ORTHO05D009575 1.0e-10 70.5 112 42.0
TAR633G2472 Trochodendron aralioides HOM05D008157 ORTHO05D009575 1.0e-10 70.5 71 59.2
DCAR_030762 Daucus carota HOM05D008157 ORTHO05D009575 1.4e-10 70.1 94 44.7
FAN17G2184 Fragaria x ananassa HOM05D008157 ORTHO05D009575 1.8e-10 69.7 41 87.8
Phvul.011G133515 Phaseolus vulgaris HOM05D012468 ORTHO05D009575 3.0e-10 68.9 68 55.9
Lj5g0023776 Lotus japonicus HOM05D012468 ORTHO05D009575 1.2e-09 67.0 121 43.8
Gohir.D02G048700 Gossypium hirsutum HOM05D008157 ORTHO05D009575 1.5e-09 66.6 113 43.4
EL10Ac3g06669 Beta vulgaris HOM05D008157 ORTHO05D009575 2.0e-09 66.2 69 47.8
Nn1g02959 Nelumbo nucifera HOM05D008157 ORTHO05D009575 4.4e-09 65.1 99 42.4
VMungo1215G2213 Vigna mungo HOM05D012468 ORTHO05D009575 4.4e-09 65.1 71 50.7
PGR004G0105 Punica granatum HOM05D008157 ORTHO05D009575 7.5e-09 64.3 80 50.0
VMungo0720G2187 Vigna mungo HOM05D012468 ORTHO05D009575 7.5e-09 64.3 68 51.5
Rhsim02G0043800 Rhododendron simsii HOM05D008157 ORTHO05D009575 9.8e-09 63.9 130 40.0
CSS0033147 Camellia sinensis var. sinensis HOM05D008157 ORTHO05D009575 1.3e-08 63.5 123 40.7
Hund20495 Selenicereus undatus HOM05D008157 ORTHO05D009575 1.7e-08 63.2 81 40.7
GSVIVG01027916001 Vitis vinifera HOM05D008157 ORTHO05D009575 1.7e-08 63.2 72 52.8
Cc03_g06320 Coffea canephora HOM05D008157 ORTHO05D009575 2.2e-08 62.8 81 46.9
Cc09_g08530 Coffea canephora HOM05D008157 ORTHO05D009575 2.2e-08 62.8 81 46.9
COL.COLO4_15964 Corchorus olitorius HOM05D008157 ORTHO05D009575 2.8e-08 62.4 99 48.5
Glyma.20G200000 Glycine max HOM05D012468 ORTHO05D009575 2.8e-08 62.4 86 46.5
Hma1.2p1_0112F.1_g054760 Hydrangea macrophylla HOM05D008157 ORTHO05D009575 6.3e-08 61.2 124 40.3
Peaxi162Scf00153g01844 Petunia axillaris HOM05D008157 ORTHO05D009575 8.3e-08 60.8 83 45.8
Aqoxy5G00149 Aquilegia oxysepala HOM05D000655 ORTHO05D001635 3.1e-07 58.9 112 39.3
Cfa014784 Carpinus fangiana HOM05D008391 ORTHO05D009743 3.1e-07 58.9 83 48.2
Duzib138G0893 Durio zibethinus HOM05D014916 ORTHO05D009575 5.4e-07 58.2 61 55.7
Medtr1g073260 Medicago truncatula HOM05D012468 ORTHO05D009575 5.4e-07 58.2 60 50.0
Lsat_1_v5_gn_6_66080 Lactuca sativa HOM05D008157 ORTHO05D035152 9.2e-07 57.4 67 49.3
MBI10_g35435_MAGBIO Magnolia biondii HOM05D008157 ORTHO05D009575 1.6e-06 56.6 127 34.6
PSO764G0012 Papaver somniferum HOM05D008157 ORTHO05D009575 1.6e-06 56.6 90 41.1
Hma1.2p1_1702F.1_g298280 Hydrangea macrophylla HOM05D008157 ORTHO05D009575 2.0e-06 56.2 65 46.2
Nitab4.5_0007351g0030 Nicotiana tabacum HOM05D008157 ORTHO05D009575 2.7e-06 55.8 67 50.7
Haze_24700 Corylus avellana HOM05D008157 ORTHO05D009575 3.5e-06 55.5 100 35.0
Psat6g131320 Pisum sativum HOM05D012468 ORTHO05D009575 3.5e-06 55.5 58 51.7
Solyc09g090710.3 Solanum lycopersicum HOM05D008157 ORTHO05D009575 5.9e-06 54.7 65 49.2
MSTRG.4173 Avicennia marina HOM05D008157 ORTHO05D009575 7.7e-06 54.3 61 45.9
SGA_v2.0_scaffold67G22685 Striga asiatica HOM05D008157 ORTHO05D009575 7.7e-06 54.3 71 40.8


User provided reference genes

Program Settings