Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 4.3e-27 124.4 87 100.0
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.2e-24 116.3 82 100.0
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.8e-17 92.4 83 61.4
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.8e-17 90.5 82 61.0
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.8e-17 90.5 85 60.0
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 8.9e-17 90.1 82 61.0
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 9.9e-16 86.7 82 59.8
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 4.9e-15 84.3 41 95.1
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 1.1e-14 83.2 41 92.7
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 1.4e-14 82.8 41 92.7
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 1.9e-14 82.4 43 88.4
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 2.4e-14 82.0 41 92.7
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.1e-13 79.0 41 87.8
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 2.7e-13 78.6 41 87.8
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 3.5e-13 78.2 41 85.4
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 4.6e-13 77.8 41 87.8
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 4.6e-13 77.8 41 87.8
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 6.0e-13 77.4 42 85.7
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 7.8e-13 77.0 41 85.4
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 7.8e-13 77.0 41 87.8
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 1.7e-12 75.9 41 82.9
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.7e-12 75.9 41 82.9
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 6.6e-12 73.9 42 81.0
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 6.6e-12 73.9 41 82.9
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 8.7e-12 73.6 41 80.5
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 8.7e-12 73.6 41 80.5
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.1e-11 73.2 41 80.5
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 1.5e-11 72.8 40 80.0
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 1.9e-11 72.4 82 48.8
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 1.9e-11 72.4 41 80.5
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.5e-11 72.0 39 82.1
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 3.3e-11 71.6 41 78.0
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 3.3e-11 71.6 42 76.2
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 4.3e-11 71.2 39 82.1
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 5.6e-11 70.9 41 78.0
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 7.3e-11 70.5 40 82.5
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 9.6e-11 70.1 42 73.8
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.6e-10 69.3 42 71.4
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 1.6e-10 69.3 42 71.4
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 2.8e-10 68.6 41 78.0
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 2.8e-10 68.6 41 78.0
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 2.8e-10 68.6 43 81.4
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.8e-10 68.6 41 75.6
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 2.8e-10 68.6 41 75.6
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 3.6e-10 68.2 41 70.7
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 3.6e-10 68.2 39 79.5
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 3.6e-10 68.2 41 70.7
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 4.8e-10 67.8 43 79.1
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 4.8e-10 67.8 83 50.6
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 6.2e-10 67.4 42 73.8
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 8.1e-10 67.0 41 73.2
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 8.1e-10 67.0 41 73.2
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 1.1e-09 66.6 45 73.3
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.4e-09 66.2 41 73.2
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.4e-09 66.2 41 73.2
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.4e-09 66.2 43 79.1
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 1.4e-09 66.2 41 68.3
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 1.8e-09 65.9 40 75.0
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 2.4e-09 65.5 39 74.4
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 3.1e-09 65.1 41 73.2
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 5.3e-09 64.3 41 70.7
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 6.9e-09 63.9 42 66.7
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 6.9e-09 63.9 41 70.7
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 6.9e-09 63.9 41 70.7
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 6.9e-09 63.9 41 70.7
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 9.0e-09 63.5 43 76.7
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 1.2e-08 63.2 38 73.7
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 2.6e-08 62.0 44 70.5
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 3.4e-08 61.6 41 68.3
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 4.4e-08 61.2 42 69.0
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 4.4e-08 61.2 41 68.3
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 4.4e-08 61.2 43 72.1
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 5.8e-08 60.8 41 68.3
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 5.8e-08 60.8 42 66.7
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 5.8e-08 60.8 42 66.7
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 7.6e-08 60.5 42 66.7
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 9.9e-08 60.1 41 68.3
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 9.9e-08 60.1 41 63.4
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.3e-07 59.7 41 68.3
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 1.3e-07 59.7 41 68.3
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 1.3e-07 59.7 41 68.3
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 1.3e-07 59.7 41 68.3
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 1.3e-07 59.7 41 68.3
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 1.3e-07 59.7 41 68.3
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 1.3e-07 59.7 41 68.3
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.7e-07 59.3 79 39.2
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 1.7e-07 59.3 48 60.4
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 1.7e-07 59.3 42 64.3
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 2.2e-07 58.9 41 65.9
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 2.2e-07 58.9 42 66.7
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 2.2e-07 58.9 41 65.9
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 2.2e-07 58.9 43 69.8
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 2.9e-07 58.5 44 70.5
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 3.8e-07 58.2 41 61.0
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 3.8e-07 58.2 38 68.4
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 3.8e-07 58.2 41 70.7
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 4.9e-07 57.8 38 65.8
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 6.4e-07 57.4 39 59.0
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 6.4e-07 57.4 36 66.7
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 6.4e-07 57.4 38 65.8
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 6.4e-07 57.4 37 64.9
DCAR_027337 Daucus carota HOM05D005475 ORTHO05D006575 1.1e-06 56.6 35 68.6
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 1.1e-06 56.6 34 73.5
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 1.1e-06 56.6 41 73.2
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.1e-06 56.6 36 63.9
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.4e-06 56.2 38 63.2
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.4e-06 56.2 38 65.8
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 1.9e-06 55.8 41 58.5
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 4.2e-06 54.7 38 65.8
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 4.2e-06 54.7 38 65.8
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 4.2e-06 54.7 38 65.8
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 7.1e-06 53.9 37 67.6


User provided reference genes

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