Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.2e-86 323.2 163 100.0
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 6.0e-83 310.8 163 96.9
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.8e-82 309.3 163 95.7
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 3.8e-77 291.6 159 94.3
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 6.5e-77 290.8 161 89.4
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 4.6e-75 284.6 161 88.2
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 6.3e-72 274.2 161 83.2
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.8e-71 272.7 158 84.2
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 6.9e-71 270.8 160 82.5
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 6.9e-71 270.8 160 82.5
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 1.5e-70 269.6 158 82.9
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 3.4e-70 268.5 157 82.8
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 3.4e-70 268.5 158 83.5
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 3.4e-70 268.5 160 81.2
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.5e-70 268.1 159 82.4
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 4.5e-70 268.1 160 80.6
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 5.9e-70 267.7 158 81.6
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 1.0e-69 266.9 155 83.2
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.7e-69 266.2 155 83.9
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 5.0e-69 264.6 157 81.5
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 5.0e-69 264.6 158 82.3
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 6.5e-69 264.2 158 82.3
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 1.9e-68 262.7 157 81.5
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.9e-68 262.7 158 82.3
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 2.5e-68 262.3 158 81.0
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 2.5e-68 262.3 160 79.4
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 3.2e-68 261.9 161 80.1
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 7.2e-68 260.8 157 82.2
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 2.1e-67 259.2 157 81.5
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 2.1e-67 259.2 157 81.5
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 3.6e-67 258.5 158 80.4
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 3.6e-67 258.5 153 83.0
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.6e-67 258.1 156 82.1
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 4.6e-67 258.1 158 81.0
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 4.6e-67 258.1 152 83.6
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 6.1e-67 257.7 158 80.4
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 6.1e-67 257.7 154 83.8
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 6.1e-67 257.7 161 81.4
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 7.9e-67 257.3 161 79.5
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.4e-66 256.5 156 82.1
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 3.0e-66 255.4 159 79.2
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 3.0e-66 255.4 158 79.7
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 5.1e-66 254.6 151 82.1
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 5.1e-66 254.6 159 79.2
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 8.8e-66 253.8 159 78.6
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 8.8e-66 253.8 159 78.6
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 1.1e-65 253.4 155 81.3
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.5e-65 253.1 156 80.8
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 3.3e-65 251.9 155 80.0
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 3.3e-65 251.9 157 78.3
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 7.4e-65 250.8 155 77.4
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 9.7e-65 250.4 156 80.8
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 1.3e-64 250.0 158 77.2
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 1.3e-64 250.0 156 78.2
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.3e-64 250.0 160 77.5
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 2.8e-64 248.8 150 82.0
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 4.8e-64 248.1 157 74.5
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 4.8e-64 248.1 155 78.7
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 6.3e-64 247.7 160 76.9
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 8.2e-64 247.3 160 76.9
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 8.2e-64 247.3 160 76.2
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 8.2e-64 247.3 160 76.9
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 8.2e-64 247.3 160 76.9
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 8.2e-64 247.3 158 75.3
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 1.4e-63 246.5 150 80.0
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 1.4e-63 246.5 161 75.2
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.8e-63 246.1 157 75.8
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 1.8e-63 246.1 152 80.3
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 3.1e-63 245.4 148 80.4
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 3.1e-63 245.4 155 77.4
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 3.1e-63 245.4 154 79.2
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 4.1e-63 245.0 160 75.6
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 4.1e-63 245.0 160 75.6
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 5.3e-63 244.6 160 75.0
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 9.1e-63 243.8 155 78.1
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 9.1e-63 243.8 160 74.4
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 9.1e-63 243.8 160 74.4
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 2.0e-62 242.7 160 73.8
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 2.6e-62 242.3 158 74.1
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 3.4e-62 241.9 149 79.9
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 3.4e-62 241.9 160 74.4
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 4.5e-62 241.5 155 78.1
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 7.7e-62 240.7 149 78.5
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.4e-60 236.5 148 79.1
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 3.2e-60 235.3 157 73.2
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 4.2e-60 235.0 156 76.9
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 7.2e-60 234.2 158 70.3
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.6e-59 233.0 192 65.1
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 2.1e-59 232.6 157 71.3
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.7e-59 232.3 178 68.0
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 4.7e-59 231.5 144 79.2
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 3.0e-58 228.8 148 77.0
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 6.7e-58 227.6 157 71.3
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 1.4e-55 219.9 181 64.6
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 7.0e-55 217.6 154 70.8
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.0e-50 203.8 170 62.9
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 8.8e-50 200.7 156 61.5
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 1.9e-44 183.0 92 93.5
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 2.1e-43 179.5 148 58.1
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 3.6e-43 178.7 92 89.1
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 6.1e-43 177.9 119 73.1
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 6.8e-42 174.5 112 78.6
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.2e-40 169.5 156 53.8
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.8e-40 169.1 147 59.9
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 1.1e-39 167.2 264 42.4
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.0e-38 162.9 113 71.7
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 9.4e-36 154.1 159 49.1
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.7e-35 152.5 158 57.6
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 3.6e-35 152.1 153 52.3
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 2.0e-33 146.4 154 46.8
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 9.5e-28 127.5 84 76.2
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 2.1e-27 126.3 140 45.0
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 5.6e-20 101.7 74 70.3
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.0e-18 95.5 63 69.8
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 5.4e-15 85.1 91 49.5
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 9.2e-15 84.3 64 65.6
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 2.3e-13 79.7 49 73.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.1e-12 77.4 55 67.3
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 2.5e-12 76.3 45 75.6
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 1.6e-11 73.6 139 34.5
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 1.2e-09 67.4 37 83.8
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 5.8e-09 65.1 37 81.1
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 4.1e-07 58.9 52 63.5


User provided reference genes

Program Settings