Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 2.7e-77 292.0 151 100.0
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 2.6e-72 275.4 151 94.0
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 9.9e-72 273.5 151 92.7
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 2.4e-70 268.9 151 92.1
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 2.6e-56 222.2 154 78.6
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 2.2e-55 219.2 155 79.4
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 6.4e-55 217.6 153 78.4
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 1.1e-49 200.3 156 73.7
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 9.0e-49 197.2 156 71.8
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 5.8e-48 194.5 156 71.2
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 5.8e-48 194.5 156 70.5
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 7.6e-48 194.1 112 86.6
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 2.2e-47 192.6 155 69.7
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 1.9e-46 189.5 141 68.1
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 2.5e-46 189.1 153 68.0
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 2.5e-46 189.1 139 68.3
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 3.2e-46 188.7 129 72.1
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 9.3e-46 187.2 129 72.9
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 9.3e-46 187.2 139 71.9
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.2e-45 186.8 149 69.8
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 2.7e-45 185.7 133 70.7
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 4.6e-45 184.9 160 66.2
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 6.0e-45 184.5 139 70.5
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 7.9e-45 184.1 129 71.3
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 7.9e-45 184.1 144 66.0
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 1.0e-44 183.7 129 71.3
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 1.3e-44 183.3 144 65.3
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 2.3e-44 182.6 135 68.9
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 5.1e-44 181.4 130 72.3
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 5.1e-44 181.4 149 65.8
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 6.7e-44 181.0 140 67.9
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 1.5e-43 179.9 151 60.9
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.5e-43 179.1 149 68.5
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 3.3e-43 178.7 118 72.9
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 4.3e-43 178.3 149 65.1
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 5.7e-43 177.9 136 68.4
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 7.4e-43 177.6 152 63.8
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 7.4e-43 177.6 149 64.4
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 1.3e-42 176.8 124 71.8
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 1.3e-42 176.8 158 63.3
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 1.6e-42 176.4 126 69.8
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 1.6e-42 176.4 150 64.7
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 1.6e-42 176.4 116 74.1
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 1.6e-42 176.4 150 64.7
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 4.8e-42 174.9 149 64.4
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 4.8e-42 174.9 130 71.5
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 6.3e-42 174.5 134 68.7
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 6.3e-42 174.5 134 68.7
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 6.3e-42 174.5 139 65.5
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 6.3e-42 174.5 115 76.5
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 8.2e-42 174.1 121 72.7
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 8.2e-42 174.1 150 66.0
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 1.1e-41 173.7 150 66.7
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 1.1e-41 173.7 151 64.2
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 1.4e-41 173.3 147 63.9
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 1.8e-41 172.9 130 70.8
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.8e-41 172.9 139 66.9
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 1.8e-41 172.9 133 68.4
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 2.4e-41 172.6 121 72.7
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 2.4e-41 172.6 145 64.1
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 2.4e-41 172.6 121 71.9
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 3.1e-41 172.2 130 70.8
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 5.3e-41 171.4 154 65.6
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 5.3e-41 171.4 116 75.9
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 5.3e-41 171.4 150 64.0
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 5.3e-41 171.4 131 68.7
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 6.9e-41 171.0 147 67.3
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 2.6e-40 169.1 124 68.5
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 3.4e-40 168.7 115 73.0
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 3.4e-40 168.7 116 75.0
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 3.4e-40 168.7 150 62.7
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 4.5e-40 168.3 132 65.9
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 4.5e-40 168.3 118 73.7
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 5.9e-40 167.9 130 69.2
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 5.9e-40 167.9 114 73.7
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 7.6e-40 167.5 147 61.2
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 1.0e-39 167.2 152 63.2
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 1.0e-39 167.2 130 71.5
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 1.3e-39 166.8 148 63.5
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 1.7e-39 166.4 120 70.8
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 1.7e-39 166.4 116 72.4
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 1.7e-39 166.4 130 70.8
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 2.2e-39 166.0 136 66.9
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 2.9e-39 165.6 135 66.7
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.9e-39 165.6 116 74.1
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 5.0e-39 164.9 156 60.9
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 6.5e-39 164.5 157 59.2
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 6.5e-39 164.5 148 62.2
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 8.5e-39 164.1 156 60.3
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 8.5e-39 164.1 149 61.7
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 1.1e-38 163.7 152 62.5
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 1.9e-38 162.9 123 65.9
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 4.2e-38 161.8 115 71.3
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 4.2e-38 161.8 115 72.2
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 4.2e-38 161.8 115 72.2
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 4.2e-38 161.8 130 67.7
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 2.1e-37 159.5 152 59.2
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 2.1e-37 159.5 132 63.6
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 1.3e-36 156.8 116 70.7
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 1.3e-36 156.8 149 58.4
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 1.8e-36 156.4 142 58.5
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 1.5e-35 153.3 148 58.8
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 1.5e-35 153.3 116 66.4
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 1.5e-35 153.3 121 65.3
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 1.5e-35 153.3 117 65.8
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 4.3e-35 151.8 154 59.7
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 7.4e-35 151.0 167 49.7
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.6e-34 149.8 123 66.7
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 1.8e-33 146.4 140 59.3
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 5.3e-33 144.8 76 89.5
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 1.2e-32 143.7 146 54.1
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 2.0e-32 142.9 82 84.1
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 3.4e-32 142.1 91 75.8
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 2.9e-31 139.0 75 86.7
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 5.5e-30 134.8 86 77.9
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 3.9e-28 128.6 149 53.0
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 9.1e-25 117.5 107 58.9
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 3.4e-24 115.5 119 53.8
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 4.5e-24 115.2 107 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 7.7e-24 114.4 87 65.5
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 5.5e-22 108.2 122 50.0
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 1.2e-21 107.1 124 50.8
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 2.3e-20 102.8 75 62.7
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 3.3e-19 99.0 78 61.5
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 5.9e-16 88.2 77 53.2
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 5.0e-15 85.1 131 39.7
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 2.7e-08 62.8 34 91.2


User provided reference genes

Program Settings