Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 5.3e-81 304.3 154 100.0
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 5.9e-56 221.1 155 79.4
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 4.7e-53 211.5 155 75.5
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 1.8e-52 209.5 155 74.2
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 1.8e-52 209.5 155 74.8
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 2.4e-49 199.1 154 70.1
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 2.3e-47 192.6 152 67.1
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 1.4e-41 173.3 155 63.9
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 4.1e-41 171.8 155 61.9
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 2.7e-40 169.1 155 61.3
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 3.5e-40 168.7 155 61.9
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 3.0e-39 165.6 152 58.6
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 1.5e-38 163.3 149 58.4
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 1.9e-38 162.9 128 64.1
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 4.3e-38 161.8 151 57.0
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 2.1e-37 159.5 111 71.2
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.8e-37 159.1 153 59.5
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 3.6e-37 158.7 157 56.7
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 4.7e-37 158.3 128 61.7
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 6.2e-37 157.9 128 61.7
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 8.1e-37 157.5 128 61.7
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 2.3e-36 156.0 114 66.7
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 2.3e-36 156.0 156 57.1
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 3.1e-36 155.6 134 61.2
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 4.0e-36 155.2 140 55.7
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 4.0e-36 155.2 158 57.0
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 6.8e-36 154.5 115 64.3
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 1.2e-35 153.7 134 61.2
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.2e-35 153.7 152 55.9
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 1.2e-35 153.7 118 66.9
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 1.5e-35 153.3 134 61.2
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 1.5e-35 153.3 128 61.7
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.5e-35 153.3 152 58.6
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 2.0e-35 152.9 114 64.9
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 2.6e-35 152.5 135 60.7
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 2.6e-35 152.5 120 64.2
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 3.4e-35 152.1 140 55.7
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 4.4e-35 151.8 135 60.0
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 4.4e-35 151.8 134 59.7
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 4.4e-35 151.8 153 52.3
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 5.8e-35 151.4 155 57.4
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 5.8e-35 151.4 150 54.0
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 5.8e-35 151.4 129 62.0
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 7.6e-35 151.0 125 60.0
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 9.9e-35 150.6 119 63.9
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 9.9e-35 150.6 148 55.4
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 9.9e-35 150.6 124 61.3
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 1.3e-34 150.2 136 60.3
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 1.3e-34 150.2 148 56.1
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.3e-34 150.2 117 63.2
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 3.7e-34 148.7 156 54.5
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 3.7e-34 148.7 113 66.4
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 4.9e-34 148.3 139 57.6
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 4.9e-34 148.3 137 59.9
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 4.9e-34 148.3 155 57.4
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 4.9e-34 148.3 119 63.0
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 4.9e-34 148.3 126 59.5
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 6.4e-34 147.9 136 59.6
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 6.4e-34 147.9 150 54.0
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 6.4e-34 147.9 129 62.0
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 8.4e-34 147.5 154 51.9
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 8.4e-34 147.5 148 56.1
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 8.4e-34 147.5 150 54.7
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 8.4e-34 147.5 115 65.2
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 1.1e-33 147.1 154 56.5
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 1.1e-33 147.1 149 54.4
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 1.1e-33 147.1 115 65.2
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.4e-33 146.7 115 65.2
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 1.4e-33 146.7 147 57.1
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 1.4e-33 146.7 122 59.8
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.4e-33 146.0 115 65.2
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 3.2e-33 145.6 148 55.4
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 4.1e-33 145.2 152 53.9
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 4.1e-33 145.2 133 56.4
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 4.1e-33 145.2 146 56.8
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 5.4e-33 144.8 115 65.2
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 5.4e-33 144.8 115 62.6
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 7.1e-33 144.4 135 58.5
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 7.1e-33 144.4 135 58.5
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 9.2e-33 144.1 127 60.6
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 9.2e-33 144.1 119 61.3
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 9.2e-33 144.1 116 62.9
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 9.2e-33 144.1 114 63.2
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 1.2e-32 143.7 145 56.6
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 1.6e-32 143.3 124 58.9
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 3.5e-32 142.1 156 51.9
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 3.5e-32 142.1 115 65.2
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 3.5e-32 142.1 113 63.7
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 4.6e-32 141.7 114 62.3
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 4.6e-32 141.7 115 65.2
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 4.6e-32 141.7 117 64.1
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 6.0e-32 141.4 130 58.5
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 7.8e-32 141.0 147 56.5
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 7.8e-32 141.0 114 61.4
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 1.0e-31 140.6 117 61.5
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 3.9e-31 138.7 115 60.9
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 3.9e-31 138.7 136 57.4
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 5.1e-31 138.3 119 58.0
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 2.5e-30 136.0 122 59.8
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 2.1e-29 132.9 74 82.4
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 2.8e-29 132.5 133 52.6
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 2.8e-29 132.5 142 52.1
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 2.8e-29 132.5 123 56.9
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 2.8e-29 132.5 119 54.6
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.1e-28 130.6 121 58.7
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 1.1e-28 130.6 119 56.3
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.4e-28 130.2 74 81.1
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 1.4e-28 130.2 167 45.5
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 4.0e-28 128.6 149 50.3
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 5.2e-28 128.3 74 78.4
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 6.8e-28 127.9 152 51.3
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 1.2e-27 127.1 130 50.8
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 2.6e-27 125.9 105 64.8
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 2.6e-27 125.9 115 53.9
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 1.3e-26 123.6 74 78.4
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 9.3e-25 117.5 74 73.0
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 4.8e-21 105.1 122 46.7
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 8.1e-21 104.4 105 52.4
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 4.0e-20 102.1 74 62.2
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 1.3e-18 97.1 71 62.0
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 2.9e-18 95.9 89 59.6
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 2.9e-18 95.9 74 58.1
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 6.4e-18 94.7 73 60.3
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 9.3e-17 90.9 88 51.1
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 2.8e-13 79.3 71 53.5
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 4.8e-13 78.6 81 45.7
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 5.1e-07 58.5 34 82.4


User provided reference genes

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