Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0393941 Rosa chinensis HOM05D008307 ORTHO05D010374 0.0e+00 1637.1 846 100.0
FvH4_4g03920 Fragaria vesca HOM05D008307 ORTHO05D010374 0.0e+00 1136.7 846 72.9
FAN22G1022 Fragaria x ananassa HOM05D000478 ORTHO05D010374 0.0e+00 1125.2 839 72.2
FAN17G2370 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.3e-258 896.7 745 67.0
FAN12G4262 Fragaria x ananassa HOM05D000478 ORTHO05D010374 1.0e-221 774.2 682 65.7
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 1.5e-201 707.2 898 49.6
Prupe.1G041400 Prunus persica HOM05D008307 ORTHO05D010374 1.6e-179 634.0 903 45.8
Cfa014722 Carpinus fangiana HOM05D008307 ORTHO05D010374 1.9e-151 540.8 919 39.8
QL06p018536 Quercus lobata HOM05D008307 ORTHO05D010374 3.2e-151 540.0 891 40.6
Dinv29844 Davidia involucrata HOM05D008307 ORTHO05D010374 9.0e-138 495.4 915 38.3
Haze_11405 Corylus avellana HOM05D008307 ORTHO05D010374 8.4e-136 488.8 843 38.9
Actinidia35796 Actinidia chinensis HOM05D008307 ORTHO05D010374 7.2e-111 406.0 896 35.3
Potri.010G070001 Populus trichocarpa HOM05D008307 ORTHO05D010374 3.4e-105 387.1 862 34.6
TWI73G0959 Tripterygium wilfordii HOM05D008307 ORTHO05D010374 6.1e-102 376.3 912 33.8
TAR365G0480 Trochodendron aralioides HOM05D008307 ORTHO05D010374 4.5e-97 360.1 906 33.1
Rhsim04G0177000 Rhododendron simsii HOM05D008307 ORTHO05D010374 3.1e-90 337.4 847 32.0
CSS0044876 Camellia sinensis var. sinensis HOM05D008307 ORTHO05D010374 6.5e-88 329.7 766 34.6
vmacro08510 Vaccinium macrocarpon HOM05D008307 ORTHO05D010374 1.0e-80 305.8 855 30.9
DCAR_024261 Daucus carota HOM05D008307 ORTHO05D010374 2.2e-75 288.1 915 29.7
CARHR099340 Cardamine hirsuta HOM05D008307 ORTHO05D010374 5.4e-74 283.5 320 44.1
PGSC0003DMG400017215 Solanum tuberosum HOM05D008307 ORTHO05D010374 4.2e-71 273.9 455 36.9
THA.LOC104822237 Tarenaya hassleriana HOM05D008307 ORTHO05D010374 1.6e-70 271.9 510 35.1
AL3G38030 Arabidopsis lyrata HOM05D008307 ORTHO05D010374 2.8e-70 271.2 337 42.7
Solyc09g090290.3 Solanum lycopersicum HOM05D008307 ORTHO05D010374 2.3e-69 268.1 868 27.4
AT3G23370 Arabidopsis thaliana HOM05D008307 ORTHO05D010374 3.0e-69 267.7 309 46.0
Thhalv10020149m.g Eutrema salsugineum HOM05D008307 ORTHO05D010374 8.8e-69 266.2 393 39.4
Migut.N00284 Erythranthe guttata HOM05D008307 ORTHO05D010374 2.6e-68 264.6 444 38.1
RcHm_v2.0_Chr1g0364771 Rosa chinensis HOM05D000122 ORTHO05D011214 2.6e-68 264.6 251 61.4
Sopen09g033190 Solanum pennellii HOM05D008307 ORTHO05D010374 2.6e-68 264.6 876 27.4
Nitab4.5_0007280g0010 Nicotiana tabacum HOM05D008307 ORTHO05D010374 2.8e-67 261.2 862 28.1
Aqoxy7G00920 Aquilegia oxysepala HOM05D008307 ORTHO05D010374 8.3e-67 259.6 332 45.2
BraA07t28701Z Brassica rapa HOM05D008307 ORTHO05D010374 2.4e-66 258.1 423 34.5
A07p09070 Brassica napus HOM05D008307 ORTHO05D010374 4.1e-66 257.3 423 34.5
Nitab4.5_0000044g0470 Nicotiana tabacum HOM05D008307 ORTHO05D010374 5.9e-65 253.4 835 28.0
COL.COLO4_15896 Corchorus olitorius HOM05D008307 ORTHO05D010374 1.0e-64 252.7 729 31.4
DCAR_027325 Daucus carota HOM05D008307 ORTHO05D010374 1.3e-64 252.3 307 47.9
C07p14040 Brassica napus HOM05D008307 ORTHO05D010374 2.9e-64 251.1 427 33.7
BolC7t41901H Brassica oleracea HOM05D008307 ORTHO05D010374 6.6e-64 250.0 427 33.7
BcaC06g35512 Brassica carinata HOM05D008307 ORTHO05D010374 1.5e-63 248.8 432 33.1
MBI07_g31095_MAGBIO Magnolia biondii HOM05D008307 ORTHO05D010374 2.1e-62 245.0 333 44.7
CAN.G220.11 Capsicum annuum HOM05D008307 ORTHO05D010374 1.4e-61 242.3 315 42.2
Peaxi162Scf00041g00209 Petunia axillaris HOM05D008307 ORTHO05D010374 2.0e-60 238.4 830 29.0
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 2.4e-58 231.5 318 43.4
Carub.0003s2363 Capsella rubella HOM05D008307 ORTHO05D010374 4.3e-55 220.7 241 47.7
PGR031G2080 Punica granatum HOM05D008307 ORTHO05D010374 8.0e-54 216.5 502 33.1
SGA_v2.0_scaffold31G12662 Striga asiatica HOM05D008307 ORTHO05D010374 1.5e-44 185.7 457 31.9
Thecc.04G258000 Theobroma cacao HOM05D008307 ORTHO05D010374 1.9e-42 178.7 175 54.3
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 2.1e-41 175.3 327 35.5
Gorai.011G175900 Gossypium raimondii HOM05D008307 ORTHO05D010374 1.8e-37 162.2 501 29.9
Gohir.D10G155880 Gossypium hirsutum HOM05D008307 ORTHO05D010374 4.9e-35 154.1 262 37.8
Cc03_g05700 Coffea canephora HOM05D008307 ORTHO05D010374 2.1e-33 148.7 824 25.7
Cc03_g05710 Coffea canephora HOM05D008307 ORTHO05D010374 6.6e-32 143.7 142 48.6
SMO329G0060 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 1.6e-22 112.5 320 29.4
Pp3c6_16530 Physcomitrium patens HOM05D008307 ORTHO05D010374 1.3e-19 102.8 294 27.2
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 5.1e-16 90.9 158 36.7
Pp3c5_17310 Physcomitrium patens HOM05D008307 ORTHO05D010374 5.6e-15 87.4 282 26.2
Mapoly0004s0145 Marchantia polymorpha HOM05D008307 ORTHO05D010374 3.1e-13 81.6 300 25.7
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 1.2e-12 79.7 334 25.4
SMO165G0083 Selaginella moellendorffii HOM05D008307 ORTHO05D010374 2.0e-12 79.0 156 31.4
Thecc.04G258100 Theobroma cacao HOM05D008307 ORTHO05D010374 9.3e-10 70.1 69 47.8
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 1.5e-07 62.8 154 31.2


User provided reference genes

Program Settings