Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0393741 Rosa chinensis HOM05D008315 ORTHO05D009452 2.1e-116 422.5 242 100.0
RcHm_v2.0_Chr2g0145131 Rosa chinensis HOM05D008315 ORTHO05D009452 9.6e-93 344.0 242 74.0
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.7e-89 333.2 242 69.8
RcHm_v2.0_Chr4g0397391 Rosa chinensis HOM05D008315 ORTHO05D009452 1.7e-89 333.2 229 74.7
FAN08G1914 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.4e-88 328.2 242 69.4
FAN24G1602 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.8e-82 308.1 208 75.5
FAN10G3967 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.3e-77 292.0 214 68.7
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 3.0e-70 269.2 172 78.5
FAN08G3171 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.4e-69 264.6 177 75.7
FvH4_2g21543 Fragaria vesca HOM05D008315 ORTHO05D009452 3.2e-64 249.2 182 72.0
FAN22G1440 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.1e-63 246.5 229 59.0
RcHm_v2.0_Chr2g0095801 Rosa chinensis HOM05D008315 ORTHO05D009452 4.7e-31 139.0 168 47.6
RcHm_v2.0_Chr5g0015951 Rosa chinensis HOM05D008315 ORTHO05D009452 7.5e-29 131.7 158 46.8
FAN20G0527 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.1e-27 127.9 186 41.9
FvH4_2g00150 Fragaria vesca HOM05D008315 ORTHO05D009452 4.1e-27 125.9 207 39.6
FvH4_6g11351 Fragaria vesca HOM05D008315 ORTHO05D009452 5.3e-27 125.6 193 40.4
FAN08G0992 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.2e-24 115.9 227 35.7
FAN21G3482 Fragaria x ananassa HOM05D008315 ORTHO05D009452 9.4e-24 114.8 138 44.9
FAN22G1488 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.8e-22 110.5 165 41.2
FAN24G3308 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.8e-22 108.6 177 39.0
FAN04G1611 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.5e-21 107.5 186 39.8
FAN20G0161 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.7e-21 105.5 225 34.2
FAN05G2530 Fragaria x ananassa HOM05D009706 ORTHO05D009452 8.3e-20 101.7 177 36.7
FvH4_3g32800 Fragaria vesca HOM05D009706 ORTHO05D009452 5.4e-19 99.0 177 36.2
FAN02G2771 Fragaria x ananassa HOM05D009706 ORTHO05D009452 5.4e-19 99.0 177 35.6
RcHm_v2.0_Chr7g0237841 Rosa chinensis HOM05D009706 ORTHO05D009452 9.1e-19 98.2 194 35.6
FAN15G1960 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.6e-18 97.4 226 31.9
FAN05G5299 Fragaria x ananassa HOM05D009706 ORTHO05D009452 4.5e-18 95.9 177 35.0
MD03G1101500 Malus domestica HOM05D008315 ORTHO05D009452 1.5e-16 90.9 123 46.3
FAN17G0399 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.5e-16 90.1 170 37.1
FAN08G2751 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.2e-16 89.7 189 34.9
FAN27G0213 Fragaria x ananassa HOM05D009706 ORTHO05D009452 3.2e-16 89.7 138 37.7
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 7.2e-16 88.6 213 34.3
FvH4_4g00092 Fragaria vesca HOM05D008315 ORTHO05D009452 9.4e-16 88.2 191 32.5
RcHm_v2.0_Chr3g0468771 Rosa chinensis HOM05D009706 ORTHO05D009452 6.1e-15 85.5 141 38.3
RcHm_v2.0_Chr4g0435991 Rosa chinensis HOM05D009706 ORTHO05D009452 6.1e-15 85.5 141 38.3
FAN25G1520 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.3e-14 83.6 189 33.9
FAN05G0389 Fragaria x ananassa HOM05D009706 ORTHO05D009452 7.5e-13 78.6 170 36.5
FAN14G0707 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.5e-13 78.6 162 35.2
RcHm_v2.0_Chr7g0184951 Rosa chinensis HOM05D008315 ORTHO05D009452 1.7e-12 77.4 143 35.7
FAN05G1217 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.8e-12 76.6 99 44.4
RcHm_v2.0_Chr2g0111771 Rosa chinensis HOM05D012440 ORTHO05D009452 2.8e-12 76.6 203 29.6
RcHm_v2.0_Chr2g0143311 Rosa chinensis HOM05D012440 ORTHO05D009452 1.4e-11 74.3 157 31.2
FAN03G2326 Fragaria x ananassa HOM05D009706 ORTHO05D009452 3.1e-11 73.2 193 30.1
RcHm_v2.0_Chr5g0016651 Rosa chinensis HOM05D008315 ORTHO05D009452 1.2e-10 71.2 65 55.4
FAN01G0827 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.6e-10 70.9 171 32.2
MD02G1315300 Malus domestica HOM05D008315 ORTHO05D009452 7.7e-10 68.6 158 36.1
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.7e-09 67.4 108 36.1
TAR633G1500 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.9e-08 63.9 112 39.3
FAN03G0559 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.3e-08 63.2 105 36.2
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 7.3e-08 62.0 119 37.8
RcHm_v2.0_Chr1g0332021 Rosa chinensis HOM05D009706 ORTHO05D009452 7.3e-08 62.0 163 33.1
FAN19G2826 Fragaria x ananassa HOM05D012440 ORTHO05D009452 9.5e-08 61.6 89 40.4
FAN21G3607 Fragaria x ananassa HOM05D012440 ORTHO05D009452 9.5e-08 61.6 89 40.4
FAN06G4265 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.2e-07 61.2 89 40.4
FAN09G3904 Fragaria x ananassa HOM05D009706 ORTHO05D009452 1.6e-07 60.8 183 32.2
FAN27G1488 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.6e-07 60.8 124 36.3
FAN04G2114 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.8e-07 60.1 173 30.6
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.8e-07 60.1 140 31.4
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 1.0e-06 58.2 159 30.2
PSO541G0763 Papaver somniferum HOM05D001309 ORTHO05D000385 1.4e-06 57.8 114 35.1
RcHm_v2.0_Chr7g0201731 Rosa chinensis HOM05D008315 ORTHO05D009452 1.4e-06 57.8 144 32.6
RcHm_v2.0_Chr6g0274501 Rosa chinensis HOM05D008315 ORTHO05D009452 1.8e-06 57.4 174 32.2
RcHm_v2.0_Chr6g0260911 Rosa chinensis HOM05D012440 ORTHO05D009452 3.0e-06 56.6 111 32.4
FAN11G3924 Fragaria x ananassa HOM05D008315 ORTHO05D009452 4.0e-06 56.2 48 58.3
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 5.2e-06 55.8 171 28.7
FAN03G0562 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.8e-06 55.5 130 33.1
FAN22G0307 Fragaria x ananassa HOM05D012440 ORTHO05D009452 6.8e-06 55.5 79 40.5
Nitab4.5_0001078g0120 Nicotiana tabacum HOM05D009290 ORTHO05D009597 6.8e-06 55.5 145 31.0
Nitab4.5_0006718g0020 Nicotiana tabacum HOM05D001309 ORTHO05D000385 8.9e-06 55.1 175 29.1


User provided reference genes

Program Settings