Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.4e-50 201.8 98 100.0
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 6.1e-30 134.0 90 76.7
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.8e-29 132.5 90 76.7
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.8e-29 132.5 90 76.7
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.8e-29 132.5 90 76.7
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.0e-28 129.0 90 75.6
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 5.7e-28 127.5 88 75.0
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.4e-26 122.1 88 72.7
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 4.1e-26 121.3 88 71.6
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.2e-22 109.8 88 63.6
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.6e-22 109.4 88 63.6
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.6e-22 108.2 89 59.6
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 3.6e-22 108.2 88 61.4
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 4.7e-22 107.8 88 63.6
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 8.0e-22 107.1 88 63.6
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 2.3e-21 105.5 90 57.8
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.0e-21 105.1 90 57.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 5.2e-21 104.4 87 63.2
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 5.2e-21 104.4 88 58.0
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 5.2e-21 104.4 88 59.1
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 6.7e-21 104.0 93 55.9
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 8.8e-21 103.6 88 58.0
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.1e-20 103.2 88 60.2
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.1e-20 103.2 88 58.0
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.5e-20 102.8 94 55.3
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 2.0e-20 102.4 88 58.0
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.6e-20 102.1 88 58.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.3e-20 101.7 88 58.0
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 3.3e-20 101.7 88 59.1
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 3.3e-20 101.7 88 59.1
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.4e-20 101.3 88 58.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 4.4e-20 101.3 88 56.8
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 4.4e-20 101.3 90 57.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 5.7e-20 100.9 86 59.3
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 5.7e-20 100.9 93 52.7
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.4e-20 100.5 90 57.8
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 7.4e-20 100.5 88 58.0
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 7.4e-20 100.5 88 56.8
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 7.4e-20 100.5 88 60.2
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 7.4e-20 100.5 88 60.2
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 9.7e-20 100.1 101 52.5
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.3e-19 99.8 88 58.0
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.3e-19 99.8 86 59.3
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.3e-19 99.8 88 58.0
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.3e-19 99.8 89 59.6
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.7e-19 99.4 88 59.1
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.2e-19 99.0 86 58.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.8e-19 98.6 82 61.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.8e-19 98.6 90 56.7
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.8e-19 98.6 88 58.0
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.8e-19 97.8 99 51.5
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 4.8e-19 97.8 88 58.0
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 4.8e-19 97.8 85 58.8
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 4.8e-19 97.8 93 51.6
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 6.3e-19 97.4 86 57.0
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 8.2e-19 97.1 86 58.1
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 8.2e-19 97.1 91 57.1
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 8.2e-19 97.1 86 57.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.1e-18 96.7 79 62.0
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.1e-18 96.7 84 59.5
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.1e-18 96.7 88 56.8
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 1.4e-18 96.3 88 55.7
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.4e-18 96.3 84 59.5
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.4e-18 96.3 88 59.1
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.4e-18 96.3 79 60.8
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.4e-18 96.3 88 58.0
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.8e-18 95.9 86 57.0
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.8e-18 95.9 86 57.0
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.4e-18 95.5 88 54.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 3.1e-18 95.1 86 53.5
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.1e-18 95.1 79 59.5
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 3.1e-18 95.1 88 58.0
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.1e-18 95.1 88 54.5
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 4.1e-18 94.7 87 57.5
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 4.1e-18 94.7 86 55.8
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 4.1e-18 94.7 79 59.5
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 4.1e-18 94.7 79 59.5
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 4.1e-18 94.7 86 53.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 5.3e-18 94.4 88 59.1
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 9.1e-18 93.6 86 55.8
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.2e-17 93.2 85 56.5
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.6e-17 92.8 86 55.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.6e-17 92.8 93 49.5
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 2.0e-17 92.4 79 58.2
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 2.6e-17 92.0 86 53.5
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 4.5e-17 91.3 87 52.9
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 5.9e-17 90.9 88 54.5
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 5.9e-17 90.9 88 55.7
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 5.9e-17 90.9 88 53.4
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 7.7e-17 90.5 90 52.2
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 7.7e-17 90.5 88 55.7
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.2e-16 89.0 88 52.3
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.2e-16 89.0 93 48.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 6.5e-16 87.4 88 48.9
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.5e-16 87.0 90 52.2
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 8.5e-16 87.0 88 48.9
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.5e-16 87.0 78 56.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.5e-15 86.3 86 53.5
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 2.5e-15 85.5 90 53.3
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.5e-15 85.5 88 53.4
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 3.2e-15 85.1 90 46.7
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 5.5e-15 84.3 106 44.3
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 7.2e-15 84.0 86 53.5
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 7.2e-15 84.0 86 53.5
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 7.2e-15 84.0 86 53.5
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.2e-14 83.2 92 47.8
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.6e-14 82.8 83 55.4
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 1.6e-14 82.8 86 52.3
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 4.7e-14 81.3 86 52.3
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.7e-14 81.3 88 45.5
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.1e-14 80.9 88 50.0
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 8.0e-14 80.5 82 48.8
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 1.0e-13 80.1 82 52.4
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.4e-13 79.7 86 48.8
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.4e-13 79.7 82 51.2
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 3.0e-13 78.6 82 52.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 6.8e-13 77.4 83 51.8
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.2e-12 76.6 87 44.8
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 3.4e-12 75.1 83 53.0
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 4.4e-12 74.7 88 46.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 2.2e-11 72.4 83 50.6
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.8e-11 72.0 88 45.5
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.7e-11 71.6 95 43.2
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.4e-10 68.9 67 50.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.1e-10 68.6 76 48.7
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.2e-09 66.6 82 46.3
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 2.2e-08 62.4 89 41.6
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 8.5e-08 60.5 78 46.2
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 8.5e-08 60.5 74 43.2
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 7.2e-07 57.4 63 50.8
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 9.4e-07 57.0 63 50.8
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 9.4e-07 57.0 63 50.8
FAN13G2494 Fragaria x ananassa HOM05D014123 ORTHO05D022585 2.7e-06 55.5 35 80.0
FvH4_3g29832 Fragaria vesca HOM05D003589 ORTHO05D022585 6.1e-06 54.3 54 55.6


User provided reference genes

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