Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0392921 Rosa chinensis HOM05D005708 ORTHO05D007371 3.8e-60 234.6 114 100.0
RcHm_v2.0_Chr3g0464731 Rosa chinensis HOM05D005708 ORTHO05D007371 2.3e-41 172.2 95 87.4
FvH4_6g12760 Fragaria vesca HOM05D005708 ORTHO05D007371 4.9e-39 164.5 121 71.9
FAN05G0996 Fragaria x ananassa HOM05D005708 ORTHO05D007371 1.1e-38 163.3 102 81.4
FAN09G3204 Fragaria x ananassa HOM05D005708 ORTHO05D007371 1.1e-38 163.3 102 81.4
FAN14G3704 Fragaria x ananassa HOM05D005708 ORTHO05D007371 2.4e-38 162.2 121 71.1
MD04G1138600 Malus domestica HOM05D005708 ORTHO05D007371 5.6e-35 151.0 108 72.2
MD12G1154300 Malus domestica HOM05D005708 ORTHO05D007371 9.5e-35 150.2 108 72.2
Prupe.6G264200 Prunus persica HOM05D005708 ORTHO05D007371 2.8e-34 148.7 108 71.3
THA.LOC104823402 Tarenaya hassleriana HOM05D005708 ORTHO05D007371 8.1e-34 147.1 85 80.0
ClCG04G007670 Citrullus lanatus HOM05D005708 ORTHO05D007371 3.1e-33 145.2 85 78.8
QL11p022898 Quercus lobata HOM05D005708 ORTHO05D007371 4.0e-33 144.8 98 70.4
Sp4g20220 Schrenkiella parvula HOM05D005708 ORTHO05D007371 4.0e-33 144.8 107 66.4
Haze_20879 Corylus avellana HOM05D005708 ORTHO05D007371 5.2e-33 144.4 100 71.0
Haze_20888 Corylus avellana HOM05D005708 ORTHO05D007371 5.2e-33 144.4 100 71.0
QL07p028358 Quercus lobata HOM05D005708 ORTHO05D007371 5.2e-33 144.4 98 70.4
SalBow5G2115 Salvia bowleyana HOM05D005708 ORTHO05D007371 5.2e-33 144.4 96 69.8
A03p20950 Brassica napus HOM05D005708 ORTHO05D007371 6.8e-33 144.1 111 64.9
BraA03t11334Z Brassica rapa HOM05D005708 ORTHO05D007371 6.8e-33 144.1 111 64.9
Cfa017304 Carpinus fangiana HOM05D005708 ORTHO05D007371 6.8e-33 144.1 100 69.0
CiPaw.10G149200 Carya illinoinensis HOM05D005708 ORTHO05D007371 8.9e-33 143.7 99 71.7
BcaC01g05584 Brassica carinata HOM05D005708 ORTHO05D007371 1.2e-32 143.3 98 71.4
BolC3t14857H Brassica oleracea HOM05D005708 ORTHO05D007371 1.2e-32 143.3 98 71.4
CsaV3_4G025560 Cucumis sativus L. HOM05D005708 ORTHO05D007371 1.2e-32 143.3 103 70.9
Thhalv10017070m.g Eutrema salsugineum HOM05D005708 ORTHO05D007371 1.2e-32 143.3 108 65.7
MELO3C003181.2 Cucumis melo HOM05D005708 ORTHO05D007371 1.5e-32 142.9 103 69.9
arahy.Tifrunner.gnm1.ann1.B0LHRU Arachis hypogaea HOM05D005708 ORTHO05D007371 2.0e-32 142.5 110 61.8
arahy.Tifrunner.gnm1.ann1.QBKP7Q Arachis hypogaea HOM05D005708 ORTHO05D007371 2.0e-32 142.5 110 61.8
Aa31sc78G80 Aethionema arabicum HOM05D005708 ORTHO05D007371 2.6e-32 142.1 85 76.5
arahy.Tifrunner.gnm1.ann1.J1JT5X Arachis hypogaea HOM05D003039 ORTHO05D008410 2.6e-32 142.1 110 61.8
BcaB01g03740 Brassica carinata HOM05D005708 ORTHO05D007371 2.6e-32 142.1 111 64.0
arahy.Tifrunner.gnm1.ann1.4YLV1I Arachis hypogaea HOM05D005708 ORTHO05D007371 3.4e-32 141.7 110 61.8
AL4G34860 Arabidopsis lyrata HOM05D005708 ORTHO05D007371 7.6e-32 140.6 109 63.3
Carub.0004s1982 Capsella rubella HOM05D005708 ORTHO05D007371 7.6e-32 140.6 100 67.0
Cpa.g.sc1380.1 Carica papaya HOM05D005708 ORTHO05D007371 9.9e-32 140.2 110 64.5
AT2G37920 Arabidopsis thaliana HOM05D005708 ORTHO05D007371 1.3e-31 139.8 104 63.5
C03p24610 Brassica napus HOM05D005708 ORTHO05D007371 1.3e-31 139.8 113 64.6
CARHR132460 Cardamine hirsuta HOM05D005708 ORTHO05D007371 1.3e-31 139.8 112 60.7
Sed0002606 Sechium edule HOM05D005708 ORTHO05D007371 1.7e-31 139.4 85 74.1
DCAR_012138 Daucus carota HOM05D005708 ORTHO05D007371 2.9e-31 138.7 100 66.0
Lalb_Chr12g0210311 Lupinus albus HOM05D005708 ORTHO05D007371 3.8e-31 138.3 91 65.9
Migut.J00266 Erythranthe guttata HOM05D005708 ORTHO05D007371 4.9e-31 137.9 84 77.4
Gohir.D09G148300 Gossypium hirsutum HOM05D005708 ORTHO05D007371 4.9e-31 137.9 110 64.5
Gorai.006G169300 Gossypium raimondii HOM05D005708 ORTHO05D007371 4.9e-31 137.9 110 64.5
Lalb_Chr12g0210271 Lupinus albus HOM05D005708 ORTHO05D007371 4.9e-31 137.9 91 65.9
Atru.chr8.2087 Acer truncatum HOM05D005708 ORTHO05D007371 1.1e-30 136.7 102 66.7
COL.COLO4_14700 Corchorus olitorius HOM05D005708 ORTHO05D007371 1.1e-30 136.7 86 73.3
Gohir.A09G152600 Gossypium hirsutum HOM05D005708 ORTHO05D007371 1.1e-30 136.7 108 63.9
Glyma.07G122500 Glycine max HOM05D005708 ORTHO05D007371 1.4e-30 136.3 104 65.4
Psat4g216560 Pisum sativum HOM05D005708 ORTHO05D007371 1.4e-30 136.3 105 61.9
PGR004G2501 Punica granatum HOM05D005708 ORTHO05D007371 1.4e-30 136.3 108 63.0
MSTRG.19053 Avicennia marina HOM05D005708 ORTHO05D007371 2.4e-30 135.6 104 66.3
Potri.016G103600 Populus trichocarpa HOM05D005708 ORTHO05D007371 2.4e-30 135.6 97 66.0
Ca_27721_v3 Cicer arietinum L. HOM05D005708 ORTHO05D007371 4.1e-30 134.8 110 60.9
Ciclev10012647m.g Citrus clementina HOM05D005708 ORTHO05D007371 4.1e-30 134.8 114 63.2
Thhalv10023045m.g Eutrema salsugineum HOM05D005708 ORTHO05D007371 4.1e-30 134.8 104 62.5
CANSAT35G1568 Cannabis sativa HOM05D005708 ORTHO05D007371 5.4e-30 134.4 95 68.4
Ca_25882_v3 Cicer arietinum L. HOM05D002067 ORTHO05D007371 5.4e-30 134.4 86 69.8
TPR.G17369 Trifolium pratense HOM05D005708 ORTHO05D007371 5.4e-30 134.4 94 63.8
Manes.08G082000 Manihot esculenta HOM05D005708 ORTHO05D007371 9.2e-30 133.7 84 73.8
Cc06_g02100 Coffea canephora HOM05D005708 ORTHO05D007371 1.2e-29 133.3 99 63.6
Lj2C65T6 Lonicera japonica HOM05D005708 ORTHO05D007371 1.2e-29 133.3 88 68.2
Duzib106G0627 Durio zibethinus HOM05D005708 ORTHO05D007371 1.6e-29 132.9 106 60.4
Thecc.05G029500 Theobroma cacao HOM05D005708 ORTHO05D007371 1.6e-29 132.9 107 59.8
MSTRG.5629 Avicennia marina HOM05D005708 ORTHO05D007371 2.1e-29 132.5 105 62.9
Nn2g13523 Nelumbo nucifera HOM05D005708 ORTHO05D007371 2.1e-29 132.5 84 71.4
unitig_749.g14179 Utricularia gibba HOM05D005708 ORTHO05D007371 2.1e-29 132.5 114 59.6
Lj3g0017501 Lotus japonicus HOM05D005708 ORTHO05D007371 3.5e-29 131.7 104 59.6
Phvul.010G039900 Phaseolus vulgaris HOM05D005708 ORTHO05D007371 3.5e-29 131.7 103 66.0
TWI74G0123 Tripterygium wilfordii HOM05D005708 ORTHO05D007371 3.5e-29 131.7 107 61.7
Glyma.03G100000 Glycine max HOM05D005708 ORTHO05D007371 4.6e-29 131.3 104 63.5
SGA_v2.0_scaffold85G26813 Striga asiatica HOM05D005708 ORTHO05D007371 4.6e-29 131.3 112 58.9
VMungo0331G1050 Vigna mungo HOM05D005708 ORTHO05D007371 4.6e-29 131.3 103 65.0
Dinv37119 Davidia involucrata HOM05D005708 ORTHO05D007371 1.0e-28 130.2 107 59.8
HanXRQChr04g0124491 Helianthus annuus HOM05D005708 ORTHO05D007371 1.7e-28 129.4 102 63.7
Lsat_1_v5_gn_8_84160 Lactuca sativa HOM05D005708 ORTHO05D007371 1.7e-28 129.4 86 66.3
vmacro20194 Vaccinium macrocarpon HOM05D005708 ORTHO05D007371 2.3e-28 129.0 84 66.7
Oeu001838.1 Olea europaea HOM05D005708 ORTHO05D007371 3.0e-28 128.6 116 56.9
ATR1089G112 Amborella trichopoda HOM05D005708 ORTHO05D007371 3.9e-28 128.3 98 62.2
Eucgr.B02727 Eucalyptus grandis HOM05D005708 ORTHO05D007371 3.9e-28 128.3 99 63.6
Sabra16G0103400 Salix brachista HOM05D005708 ORTHO05D007371 3.9e-28 128.3 94 64.9
Sopen09g006140 Solanum pennellii HOM05D005708 ORTHO05D007371 3.9e-28 128.3 84 69.0
PGSC0003DMG400024269 Solanum tuberosum HOM05D005708 ORTHO05D007371 3.9e-28 128.3 96 60.4
TAR636G0567 Trochodendron aralioides HOM05D005708 ORTHO05D007371 3.9e-28 128.3 113 56.6
COL.COLO4_14702 Corchorus olitorius HOM05D005708 ORTHO05D007371 6.6e-28 127.5 86 69.8
Nitab4.5_0000362g0180 Nicotiana tabacum HOM05D005708 ORTHO05D007371 6.6e-28 127.5 111 55.9
Potri.006G092100 Populus trichocarpa HOM05D005708 ORTHO05D007371 6.6e-28 127.5 94 62.8
ECA247G1035 Erigeron canadensis HOM05D005708 ORTHO05D007371 8.6e-28 127.1 87 67.8
Peaxi162Scf00975g00005 Petunia axillaris HOM05D005708 ORTHO05D007371 8.6e-28 127.1 110 56.4
Solyc09g011410.4 Solanum lycopersicum HOM05D005708 ORTHO05D007371 1.1e-27 126.7 84 66.7
Actinidia13818 Actinidia chinensis HOM05D005708 ORTHO05D007371 1.9e-27 125.9 86 68.6
Actinidia29170 Actinidia chinensis HOM05D005708 ORTHO05D007371 1.9e-27 125.9 86 68.6
CSS0015468 Camellia sinensis var. sinensis HOM05D005708 ORTHO05D007371 1.9e-27 125.9 100 64.0
Rhsim05G0199400 Rhododendron simsii HOM05D005708 ORTHO05D007371 1.9e-27 125.9 84 65.5
TAR633G0733 Trochodendron aralioides HOM05D005708 ORTHO05D007371 2.5e-27 125.6 112 58.9
CAN.G697.5 Capsicum annuum HOM05D005708 ORTHO05D007371 3.3e-27 125.2 111 55.0
Hma1.2p1_0671F.1_g200540 Hydrangea macrophylla HOM05D005708 ORTHO05D007371 3.3e-27 125.2 94 62.8
Sabra06G0069700 Salix brachista HOM05D005708 ORTHO05D007371 3.3e-27 125.2 96 62.5
CAN.G697.6 Capsicum annuum HOM05D005708 ORTHO05D007371 9.6e-27 123.6 111 55.0
Nitab4.5_0010208g0010 Nicotiana tabacum HOM05D005708 ORTHO05D007371 9.6e-27 123.6 111 55.0
PSO170G4411 Papaver somniferum HOM05D005708 ORTHO05D007371 2.8e-26 122.1 99 59.6
TAR365G0212 Trochodendron aralioides HOM05D005708 ORTHO05D007371 2.8e-26 122.1 112 58.0
AUR62033707 Chenopodium quinoa HOM05D005708 ORTHO05D007371 6.2e-26 120.9 104 56.7
AUR62036813 Chenopodium quinoa HOM05D005708 ORTHO05D007371 6.2e-26 120.9 123 52.0
MBI06_g17069_MAGBIO Magnolia biondii HOM05D005708 ORTHO05D007371 6.2e-26 120.9 121 54.5
CDE12G0309 Ceratophyllum demersum HOM05D005708 ORTHO05D007371 8.1e-26 120.6 102 54.9
PSO700G0359 Papaver somniferum HOM05D005708 ORTHO05D007371 1.4e-25 119.8 92 62.0
Aqoxy7G03344 Aquilegia oxysepala HOM05D005708 ORTHO05D007371 1.8e-25 119.4 109 55.0
EL10Ac7g16173 Beta vulgaris HOM05D005708 ORTHO05D007371 3.1e-25 118.6 108 56.5
Sc01g0004810 Simmondsia chinensis HOM05D005708 ORTHO05D007371 3.1e-25 118.6 100 63.0
CDE04G3753 Ceratophyllum demersum HOM05D005708 ORTHO05D007371 2.0e-24 115.9 86 59.3
RcHm_v2.0_Chr2g0112341 Rosa chinensis HOM05D005708 ORTHO05D007371 4.9e-23 111.3 62 80.6
HPP92_005607 Vanilla planifolia HOM05D005708 ORTHO05D007371 9.3e-22 107.1 112 53.6
Thhalv10000504m.g Eutrema salsugineum HOM05D005708 ORTHO05D007371 3.0e-20 102.1 68 66.2
Thhalv10010999m.g Eutrema salsugineum HOM05D005708 ORTHO05D007371 3.9e-20 101.7 68 67.6
Os02g0564300 Oryza sativa ssp. japonica HOM05D005708 ORTHO05D007371 5.3e-17 91.3 93 50.5
DCAR_017462 Daucus carota HOM05D005708 ORTHO05D007371 7.6e-16 87.4 101 50.5
FAN02G3647 Fragaria x ananassa HOM05D005708 ORTHO05D007371 1.4e-14 83.2 51 80.4
SEGI_02447 Sequoiadendron giganteum HOM05D005708 ORTHO05D007371 5.4e-14 81.3 90 46.7
Zm00001eb244220 Zea mays HOM05D005708 ORTHO05D007371 1.6e-13 79.7 111 39.6
Thhalv10005406m.g Eutrema salsugineum HOM05D005708 ORTHO05D007371 1.8e-12 76.3 51 72.5
Duzib093G1880 Durio zibethinus HOM05D005708 ORTHO05D007371 4.8e-10 68.2 47 70.2
Thhalv10024146m.g Eutrema salsugineum HOM05D005708 ORTHO05D007371 1.4e-09 66.6 66 53.0
Thhalv10024002m.g Eutrema salsugineum HOM05D005708 ORTHO05D007371 2.4e-09 65.9 66 53.0
Thhalv10027476m.g Eutrema salsugineum HOM05D005708 ORTHO05D007371 2.4e-06 55.8 66 47.0
Sabra15G0069200 Salix brachista HOM05D001236 ORTHO05D001090 9.3e-06 53.9 36 58.3
Sabra15G0072900 Salix brachista HOM05D001236 ORTHO05D001090 9.3e-06 53.9 36 58.3


User provided reference genes

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