Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0392171 Rosa chinensis HOM05D000118 ORTHO05D343173 6.0e-35 150.2 72 100.0
Cc03_g05190 Coffea canephora HOM05D000118 ORTHO05D000098 1.3e-08 62.8 49 57.1
RcHm_v2.0_Chr4g0392251 Rosa chinensis HOM05D000118 ORTHO05D000098 2.2e-08 62.0 43 67.4
QL06p016915 Quercus lobata HOM05D000118 ORTHO05D000098 3.7e-08 61.2 34 76.5
QL06p016947 Quercus lobata HOM05D000118 ORTHO05D000098 4.8e-08 60.8 34 73.5
Lsat_1_v5_gn_3_121280 Lactuca sativa HOM05D000118 ORTHO05D000098 6.3e-08 60.5 38 68.4
TPR.G31266 Trifolium pratense HOM05D000118 ORTHO05D000098 6.3e-08 60.5 33 75.8
Prupe.1G035800 Prunus persica HOM05D000118 ORTHO05D000098 1.1e-07 59.7 39 69.2
Sopen09g032520 Solanum pennellii HOM05D000118 ORTHO05D000098 2.4e-07 58.5 51 51.0
FAN12G0694 Fragaria x ananassa HOM05D000118 ORTHO05D000098 3.1e-07 58.2 49 53.1
PGSC0003DMG400017189 Solanum tuberosum HOM05D000118 ORTHO05D000098 3.1e-07 58.2 49 53.1
VMungo0331G0596 Vigna mungo HOM05D000118 ORTHO05D000098 3.1e-07 58.2 52 55.8
RcHm_v2.0_Chr4g0392261 Rosa chinensis HOM05D000118 ORTHO05D000098 4.1e-07 57.8 49 53.1
Gohir.A02G037500 Gossypium hirsutum HOM05D000118 ORTHO05D000098 5.3e-07 57.4 38 65.8
Hund04538 Selenicereus undatus HOM05D000118 ORTHO05D000098 5.3e-07 57.4 49 46.9
CAN.G793.22 Capsicum annuum HOM05D000118 ORTHO05D000098 6.9e-07 57.0 46 54.3
FAN10G1364 Fragaria x ananassa HOM05D000118 ORTHO05D000098 6.9e-07 57.0 38 68.4
FAN10G2546 Fragaria x ananassa HOM05D000118 ORTHO05D000098 6.9e-07 57.0 38 68.4
TAR636G3173 Trochodendron aralioides HOM05D000118 ORTHO05D000098 6.9e-07 57.0 40 57.5
TAR365G0779 Trochodendron aralioides HOM05D000118 ORTHO05D000098 9.1e-07 56.6 39 61.5
Lj6A662T55 Lonicera japonica HOM05D000118 ORTHO05D000098 1.2e-06 56.2 29 72.4
Prupe.1G036000 Prunus persica HOM05D000118 ORTHO05D000098 1.2e-06 56.2 38 68.4
PGR004G1320 Punica granatum HOM05D000118 ORTHO05D000098 1.2e-06 56.2 36 61.1
PGSC0003DMG400017248 Solanum tuberosum HOM05D000118 ORTHO05D000098 1.2e-06 56.2 49 49.0
COL.COLO4_15838 Corchorus olitorius HOM05D000118 ORTHO05D000098 1.5e-06 55.8 51 51.0
Lsat_1_v5_gn_3_121220 Lactuca sativa HOM05D000118 ORTHO05D000098 1.5e-06 55.8 49 51.0
Medtr2g069190 Medicago truncatula HOM05D000118 ORTHO05D000098 1.5e-06 55.8 29 79.3
Prupe.1G035700 Prunus persica HOM05D000118 ORTHO05D000098 1.5e-06 55.8 38 65.8
Prupe.1G191000 Prunus persica HOM05D000118 ORTHO05D000098 1.5e-06 55.8 38 65.8
TAR636G1081 Trochodendron aralioides HOM05D000118 ORTHO05D000098 1.5e-06 55.8 38 63.2
CAN.G397.72 Capsicum annuum HOM05D000118 ORTHO05D000098 2.0e-06 55.5 37 59.5
Cfa008344 Carpinus fangiana HOM05D000118 ORTHO05D000098 2.0e-06 55.5 33 66.7
Haze_11340 Corylus avellana HOM05D000118 ORTHO05D025078 2.0e-06 55.5 49 53.1
FvH4_4g03250 Fragaria vesca HOM05D000118 ORTHO05D000098 2.0e-06 55.5 38 65.8
Hma1.2p1_0310F.1_g120640 Hydrangea macrophylla HOM05D000118 ORTHO05D000098 2.0e-06 55.5 34 67.6
Oeu063886.1 Olea europaea HOM05D000118 ORTHO05D000098 2.0e-06 55.5 49 49.0
Sopen03g025910 Solanum pennellii HOM05D000118 ORTHO05D000001 2.0e-06 55.5 46 50.0
COL.COLO4_37219 Corchorus olitorius HOM05D000118 ORTHO05D000098 2.6e-06 55.1 34 64.7
Haze_02563 Corylus avellana HOM05D000118 ORTHO05D000098 2.6e-06 55.1 47 55.3
FAN06G1912 Fragaria x ananassa HOM05D000118 ORTHO05D000098 2.6e-06 55.1 38 65.8
FAN06G5123 Fragaria x ananassa HOM05D000118 ORTHO05D000098 2.6e-06 55.1 38 65.8
FAN12G2875 Fragaria x ananassa HOM05D000118 ORTHO05D025078 2.6e-06 55.1 49 53.1
PSO675G6722 Papaver somniferum HOM05D000118 ORTHO05D000098 2.6e-06 55.1 43 53.5
RcHm_v2.0_Chr4g0392091 Rosa chinensis HOM05D000118 ORTHO05D000098 2.6e-06 55.1 38 65.8
Cfa008343 Carpinus fangiana HOM05D000118 ORTHO05D000098 3.4e-06 54.7 42 54.8
Cfa008346 Carpinus fangiana HOM05D000118 ORTHO05D000098 3.4e-06 54.7 51 49.0
CiPaw.01G187600 Carya illinoinensis HOM05D000118 ORTHO05D000098 3.4e-06 54.7 49 51.0
Ciclev10005202m.g Citrus clementina HOM05D000118 ORTHO05D000098 3.4e-06 54.7 49 49.0
ECA240G4182 Erigeron canadensis HOM05D000118 ORTHO05D000098 3.4e-06 54.7 45 55.6
HanXRQChr13g0422321 Helianthus annuus HOM05D000118 ORTHO05D000098 3.4e-06 54.7 41 56.1
Medtr2g069300 Medicago truncatula HOM05D000118 ORTHO05D000098 3.4e-06 54.7 29 75.9
Nn1g02714 Nelumbo nucifera HOM05D000118 ORTHO05D000098 3.4e-06 54.7 49 53.1
PSO675G7420 Papaver somniferum HOM05D000118 ORTHO05D000098 3.4e-06 54.7 40 55.0
Phvul.004G121000 Phaseolus vulgaris HOM05D000118 ORTHO05D000098 3.4e-06 54.7 62 46.8
Prupe.1G035900 Prunus persica HOM05D000118 ORTHO05D000098 3.4e-06 54.7 38 65.8
Prupe.1G036100 Prunus persica HOM05D000118 ORTHO05D000098 3.4e-06 54.7 38 65.8
Prupe.1G036900 Prunus persica HOM05D000118 ORTHO05D000098 3.4e-06 54.7 38 63.2
RcHm_v2.0_Chr4g0392071 Rosa chinensis HOM05D000118 ORTHO05D000098 3.4e-06 54.7 49 53.1
RcHm_v2.0_Chr4g0410991 Rosa chinensis HOM05D000118 ORTHO05D000098 3.4e-06 54.7 49 51.0
PGSC0003DMG400017245 Solanum tuberosum HOM05D000118 ORTHO05D000098 3.4e-06 54.7 49 49.0
PGSC0003DMG400039221 Solanum tuberosum HOM05D000118 ORTHO05D000098 3.4e-06 54.7 38 63.2
TAR365G0870 Trochodendron aralioides HOM05D000118 ORTHO05D000098 3.4e-06 54.7 38 60.5
TAR636G0344 Trochodendron aralioides HOM05D000118 ORTHO05D000098 3.4e-06 54.7 38 60.5
TAR636G0742 Trochodendron aralioides HOM05D000118 ORTHO05D000098 3.4e-06 54.7 38 60.5
CANSAT78G2190 Cannabis sativa HOM05D000118 ORTHO05D000098 4.5e-06 54.3 34 64.7
CAN.G793.10 Capsicum annuum HOM05D000118 ORTHO05D000098 4.5e-06 54.3 33 63.6
ECA236G0431 Erigeron canadensis HOM05D000118 ORTHO05D000098 4.5e-06 54.3 29 79.3
FvH4_5g19290 Fragaria vesca HOM05D000118 ORTHO05D000098 4.5e-06 54.3 30 76.7
FAN11G0290 Fragaria x ananassa HOM05D000118 ORTHO05D000098 4.5e-06 54.3 43 58.1
FAN12G0268 Fragaria x ananassa HOM05D000118 ORTHO05D000098 4.5e-06 54.3 30 76.7
Lsat_1_v5_gn_3_121180 Lactuca sativa HOM05D000118 ORTHO05D000098 4.5e-06 54.3 34 64.7
Lj3g0000715 Lotus japonicus HOM05D000118 ORTHO05D000098 4.5e-06 54.3 29 79.3
PSO063G0068 Papaver somniferum HOM05D000118 ORTHO05D000098 4.5e-06 54.3 43 53.5
Psat1g003040 Pisum sativum HOM05D000118 ORTHO05D000098 4.5e-06 54.3 42 59.5
Atru.chr4.2129 Acer truncatum HOM05D000118 ORTHO05D000098 5.9e-06 53.9 49 49.0
arahy.Tifrunner.gnm1.ann1.173QHH Arachis hypogaea HOM05D000118 ORTHO05D000098 5.9e-06 53.9 33 63.6
arahy.Tifrunner.gnm1.ann1.VZ818S Arachis hypogaea HOM05D000118 ORTHO05D000098 5.9e-06 53.9 33 63.6
Dinv29884 Davidia involucrata HOM05D000118 ORTHO05D000098 5.9e-06 53.9 49 49.0
Gohir.A02G037700 Gossypium hirsutum HOM05D000118 ORTHO05D000098 5.9e-06 53.9 40 57.5
Gohir.A09G225500 Gossypium hirsutum HOM05D000118 ORTHO05D000098 5.9e-06 53.9 49 51.0
Gorai.006G249100 Gossypium raimondii HOM05D000118 ORTHO05D000098 5.9e-06 53.9 49 51.0
Lsat_1_v5_gn_3_121100 Lactuca sativa HOM05D000118 ORTHO05D000098 5.9e-06 53.9 38 60.5
Lj3A797T75 Lonicera japonica HOM05D000118 ORTHO05D000098 5.9e-06 53.9 49 53.1
Solyc09g089720.3 Solanum lycopersicum HOM05D000118 ORTHO05D000098 5.9e-06 53.9 49 46.9
PGSC0003DMG400038034 Solanum tuberosum HOM05D000118 ORTHO05D000098 5.9e-06 53.9 33 66.7
TPR.G15858 Trifolium pratense HOM05D000118 ORTHO05D000098 5.9e-06 53.9 40 57.5
CAN.G793.13 Capsicum annuum HOM05D000118 ORTHO05D000098 7.7e-06 53.5 50 46.0
COL.COLO4_15852 Corchorus olitorius HOM05D000118 ORTHO05D000098 7.7e-06 53.5 30 70.0
Hma1.2p1_0310F.1_g120600 Hydrangea macrophylla HOM05D000118 ORTHO05D000098 7.7e-06 53.5 34 61.8
Medtr2g069090 Medicago truncatula HOM05D000118 ORTHO05D000098 7.7e-06 53.5 34 67.6
QL06p016924 Quercus lobata HOM05D000118 ORTHO05D000098 7.7e-06 53.5 38 60.5
RcHm_v2.0_Chr4g0391931 Rosa chinensis HOM05D000118 ORTHO05D000098 7.7e-06 53.5 38 63.2
SalBow4G2918 Salvia bowleyana HOM05D000118 ORTHO05D000098 7.7e-06 53.5 38 57.9
PGSC0003DMG400017184 Solanum tuberosum HOM05D000118 ORTHO05D000098 7.7e-06 53.5 49 42.9
Thecc.04G251600 Theobroma cacao HOM05D000118 ORTHO05D000098 7.7e-06 53.5 51 43.1


User provided reference genes

Program Settings