Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0391941 Rosa chinensis HOM05D004476 ORTHO05D002200 4.1e-47 191.0 97 100.0
RcHm_v2.0_Chr4g0398651 Rosa chinensis HOM05D004476 ORTHO05D002200 7.8e-38 160.2 99 82.8
FvH4_4g06710 Fragaria vesca HOM05D004476 ORTHO05D002200 3.9e-37 157.9 99 82.8
FAN07G1794 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.9e-37 157.9 99 82.8
FAN12G3358 Fragaria x ananassa HOM05D004476 ORTHO05D002200 3.9e-37 157.9 99 82.8
FAN17G0770 Fragaria x ananassa HOM05D004476 ORTHO05D002200 5.1e-37 157.5 99 81.8
FAN22G1515 Fragaria x ananassa HOM05D004476 ORTHO05D002200 2.5e-36 155.2 95 84.2
VMungo1309G0306 Vigna mungo HOM05D004476 ORTHO05D002200 4.0e-34 147.9 99 75.8
MD16G1242800 Malus domestica HOM05D004476 ORTHO05D002200 5.3e-34 147.5 99 75.8
Aqoxy7G02925 Aquilegia oxysepala HOM05D004476 ORTHO05D002200 1.2e-33 146.4 99 74.7
Medtr4g126790 Medicago truncatula HOM05D004476 ORTHO05D002200 1.5e-33 146.0 99 74.7
TPR.G31650 Trifolium pratense HOM05D004476 ORTHO05D002200 1.5e-33 146.0 99 74.7
Lalb_Chr11g0074651 Lupinus albus HOM05D004476 ORTHO05D002200 2.0e-33 145.6 99 74.7
MD13G1237400 Malus domestica HOM05D004476 ORTHO05D002200 2.0e-33 145.6 99 74.7
Phvul.009G233600 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 2.0e-33 145.6 99 75.8
Prupe.1G069900 Prunus persica HOM05D004476 ORTHO05D002200 2.0e-33 145.6 99 74.7
Ca_21269_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 3.4e-33 144.8 99 73.7
Glyma.09G062200 Glycine max HOM05D004476 ORTHO05D002200 9.9e-33 143.3 99 74.7
Glyma.15G168600 Glycine max HOM05D004476 ORTHO05D002200 9.9e-33 143.3 99 74.7
Sabra18G0113200 Salix brachista HOM05D004476 ORTHO05D002200 9.9e-33 143.3 99 71.7
CiPaw.08G030800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.7e-32 142.5 95 75.8
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea HOM05D004476 ORTHO05D002200 2.2e-32 142.1 99 72.7
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea HOM05D004476 ORTHO05D002200 2.2e-32 142.1 99 72.7
CANSAT01G2105 Cannabis sativa HOM05D004476 ORTHO05D002200 2.2e-32 142.1 99 73.7
Psat4g013880 Pisum sativum HOM05D004476 ORTHO05D002200 2.2e-32 142.1 99 72.7
GSVIVG01029250001 Vitis vinifera HOM05D004476 ORTHO05D002200 2.9e-32 141.7 99 72.7
Cc06_g12980 Coffea canephora HOM05D004476 ORTHO05D002200 3.8e-32 141.4 99 71.7
MSTRG.19721 Avicennia marina HOM05D004476 ORTHO05D002200 4.9e-32 141.0 99 70.7
MSTRG.6242 Avicennia marina HOM05D004476 ORTHO05D002200 6.4e-32 140.6 99 72.7
Haze_22059 Corylus avellana HOM05D004476 ORTHO05D002200 6.4e-32 140.6 99 72.7
Potri.018G133500 Populus trichocarpa HOM05D004476 ORTHO05D002200 6.4e-32 140.6 99 70.7
EL10Ac8g19281 Beta vulgaris HOM05D004476 ORTHO05D002200 8.4e-32 140.2 99 70.7
CiPaw.07G199800 Carya illinoinensis HOM05D004476 ORTHO05D002200 1.1e-31 139.8 95 72.6
Ca_02141_v3 Cicer arietinum L. HOM05D004476 ORTHO05D002200 1.1e-31 139.8 99 71.7
COL.COLO4_23446 Corchorus olitorius HOM05D004476 ORTHO05D002200 1.4e-31 139.4 99 72.7
Medtr2g038550 Medicago truncatula HOM05D004476 ORTHO05D002200 1.4e-31 139.4 99 70.7
Ciclev10009996m.g Citrus clementina HOM05D004476 ORTHO05D002200 1.9e-31 139.0 95 71.6
Migut.J01504 Erythranthe guttata HOM05D004476 ORTHO05D002200 1.9e-31 139.0 99 72.7
AL7G22400 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 2.4e-31 138.7 99 70.7
AT4G29850 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 2.4e-31 138.7 99 70.7
Cfa013479 Carpinus fangiana HOM05D004476 ORTHO05D002200 2.4e-31 138.7 99 71.7
CSS0026677 Camellia sinensis var. sinensis HOM05D004476 ORTHO05D002200 3.2e-31 138.3 99 68.7
SGA_v2.0_scaffold17G07943 Striga asiatica HOM05D004476 ORTHO05D002200 3.2e-31 138.3 95 72.6
Thecc.09G188500 Theobroma cacao HOM05D004476 ORTHO05D002200 3.2e-31 138.3 99 69.7
Lj6g0012515 Lotus japonicus HOM05D004476 ORTHO05D002200 4.2e-31 137.9 99 72.7
Rhsim01G0068600 Rhododendron simsii HOM05D004476 ORTHO05D002200 4.2e-31 137.9 99 68.7
MELO3C017417.2 Cucumis melo HOM05D004476 ORTHO05D002200 5.4e-31 137.5 99 67.7
Duzib170G0172 Durio zibethinus HOM05D004476 ORTHO05D002200 5.4e-31 137.5 99 69.7
CARHR237750 Cardamine hirsuta HOM05D004476 ORTHO05D002200 7.1e-31 137.1 99 69.7
Cpa.g.sc115.54 Carica papaya HOM05D004476 ORTHO05D002200 7.1e-31 137.1 99 69.7
Thhalv10026650m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 7.1e-31 137.1 99 69.7
Atru.chr7.991 Acer truncatum HOM05D004476 ORTHO05D002200 9.3e-31 136.7 95 73.7
Carub.0004s1478 Capsella rubella HOM05D004476 ORTHO05D002200 9.3e-31 136.7 99 68.7
Oeu032540.1 Olea europaea HOM05D004476 ORTHO05D002200 9.3e-31 136.7 95 70.5
unitig_60.g25493 Utricularia gibba HOM05D004476 ORTHO05D002200 1.2e-30 136.3 99 69.7
CsaV3_1G031980 Cucumis sativus L. HOM05D004476 ORTHO05D002200 1.6e-30 136.0 99 66.7
THA.LOC104813499 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 1.6e-30 136.0 99 70.7
ClCG06G013730 Citrullus lanatus HOM05D004476 ORTHO05D002200 2.1e-30 135.6 99 67.7
Sp7g27660 Schrenkiella parvula HOM05D004476 ORTHO05D002200 2.1e-30 135.6 99 68.7
TAR383G0891 Trochodendron aralioides HOM05D004476 ORTHO05D002200 2.1e-30 135.6 99 67.7
AUR62031259 Chenopodium quinoa HOM05D004476 ORTHO05D002200 2.7e-30 135.2 99 67.7
Manes.04G036000 Manihot esculenta HOM05D004476 ORTHO05D002200 2.7e-30 135.2 99 68.7
TWI34G1740 Tripterygium wilfordii HOM05D004476 ORTHO05D002200 2.7e-30 135.2 99 68.7
THA.LOC104803963 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 3.5e-30 134.8 99 69.7
A03p59280 Brassica napus HOM05D004476 ORTHO05D002200 4.6e-30 134.4 99 67.7
C07p57290 Brassica napus HOM05D004476 ORTHO05D002200 4.6e-30 134.4 99 67.7
BraA03t14985Z Brassica rapa HOM05D004476 ORTHO05D002200 4.6e-30 134.4 99 67.7
vmacro20569 Vaccinium macrocarpon HOM05D004476 ORTHO05D002200 4.6e-30 134.4 99 66.7
TPR.G32576 Trifolium pratense HOM05D004476 ORTHO05D002200 6.0e-30 134.0 99 68.7
BcaNung00496 Brassica carinata HOM05D004476 ORTHO05D002200 7.9e-30 133.7 99 67.7
Gohir.D08G090800 Gossypium hirsutum HOM05D004476 ORTHO05D002200 7.9e-30 133.7 99 65.7
Gorai.004G096100 Gossypium raimondii HOM05D004476 ORTHO05D002200 7.9e-30 133.7 99 65.7
unitig_0.g577 Utricularia gibba HOM05D004476 ORTHO05D002200 7.9e-30 133.7 99 68.7
Potri.006G072000 Populus trichocarpa HOM05D004476 ORTHO05D002200 1.0e-29 133.3 99 68.7
Aa31LG2G20690 Aethionema arabicum HOM05D004476 ORTHO05D002200 1.3e-29 132.9 99 66.7
Ah.14g086030 Amaranthus hybridus HOM05D004476 ORTHO05D002200 1.3e-29 132.9 99 67.7
QL11p005289 Quercus lobata HOM05D004476 ORTHO05D002200 1.3e-29 132.9 95 69.5
PGR142G0686 Punica granatum HOM05D004476 ORTHO05D002200 1.8e-29 132.5 99 68.7
Eucgr.F03859 Eucalyptus grandis HOM05D004476 ORTHO05D002200 2.3e-29 132.1 99 66.7
Oeu025695.1 Olea europaea HOM05D004476 ORTHO05D002200 2.3e-29 132.1 95 71.6
Gohir.A08G080700 Gossypium hirsutum HOM05D004476 ORTHO05D002200 3.0e-29 131.7 99 64.6
Sed0005515 Sechium edule HOM05D004476 ORTHO05D002200 3.0e-29 131.7 99 65.7
Sc14g0003140 Simmondsia chinensis HOM05D004476 ORTHO05D002200 3.0e-29 131.7 99 66.7
SGA_v2.0_scaffold69G23243 Striga asiatica HOM05D004476 ORTHO05D002200 3.0e-29 131.7 95 72.6
MSTRG.10746 Avicennia marina HOM05D004476 ORTHO05D002200 3.9e-29 131.3 95 68.4
Manes.11G129400 Manihot esculenta HOM05D004476 ORTHO05D002200 5.1e-29 131.0 99 65.7
Psat1g142560 Pisum sativum HOM05D004476 ORTHO05D002200 5.1e-29 131.0 99 66.7
PSO063G1528 Papaver somniferum HOM05D004476 ORTHO05D002200 8.7e-29 130.2 99 68.7
PSO170G5845 Papaver somniferum HOM05D004476 ORTHO05D002200 8.7e-29 130.2 99 68.7
Gohir.A05G345854 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.5e-28 129.4 99 64.6
Gohir.D04G085200 Gossypium hirsutum HOM05D004476 ORTHO05D002200 1.5e-28 129.4 99 64.6
Gorai.012G095200 Gossypium raimondii HOM05D004476 ORTHO05D002200 1.5e-28 129.4 99 64.6
SGA_v2.0_scaffold66G22434 Striga asiatica HOM05D004476 ORTHO05D002200 1.5e-28 129.4 95 70.5
A01p08310 Brassica napus HOM05D004476 ORTHO05D002200 3.3e-28 128.3 99 64.6
Lj2g0010276 Lotus japonicus HOM05D004476 ORTHO05D002200 3.3e-28 128.3 99 64.6
AL3G48970 Arabidopsis lyrata HOM05D004476 ORTHO05D002200 4.3e-28 127.9 95 66.3
C01p09350 Brassica napus HOM05D004476 ORTHO05D002200 4.3e-28 127.9 99 64.6
BolC1t00923H Brassica oleracea HOM05D004476 ORTHO05D002200 4.3e-28 127.9 99 64.6
Carub.0003s3357 Capsella rubella HOM05D004476 ORTHO05D002200 4.3e-28 127.9 95 65.3
CARHR109800 Cardamine hirsuta HOM05D004476 ORTHO05D002200 4.3e-28 127.9 95 66.3
Sp3g32720 Schrenkiella parvula HOM05D004476 ORTHO05D002200 4.3e-28 127.9 95 66.3
AT2G19350 Arabidopsis thaliana HOM05D004476 ORTHO05D002200 5.6e-28 127.5 95 65.3
Thhalv10022925m.g Eutrema salsugineum HOM05D004476 ORTHO05D002200 9.6e-28 126.7 95 65.3
THA.LOC104817767 Tarenaya hassleriana HOM05D004476 ORTHO05D002200 9.6e-28 126.7 95 68.4
BcaB03g16723 Brassica carinata HOM05D004476 ORTHO05D002200 1.3e-27 126.3 95 64.2
BcaC06g36566 Brassica carinata HOM05D004476 ORTHO05D002200 1.3e-27 126.3 95 64.2
BolC7t40682H Brassica oleracea HOM05D004476 ORTHO05D002200 1.3e-27 126.3 95 64.2
BraA07t27934Z Brassica rapa HOM05D004476 ORTHO05D002200 1.3e-27 126.3 95 64.2
Lj4g0004777 Lotus japonicus HOM05D004476 ORTHO05D002200 1.3e-27 126.3 99 64.6
Oeu025208.1 Olea europaea HOM05D004476 ORTHO05D002200 1.3e-27 126.3 89 70.8
BraA01t00779Z Brassica rapa HOM05D004476 ORTHO05D002200 1.6e-27 125.9 99 63.6
SalBow1G0556 Salvia bowleyana HOM05D004476 ORTHO05D002200 1.6e-27 125.9 95 65.3
Duzib168G2374 Durio zibethinus HOM05D004476 ORTHO05D002200 2.1e-27 125.6 99 63.6
HanXRQChr05g0142171 Helianthus annuus HOM05D004476 ORTHO05D002200 2.1e-27 125.6 101 65.3
ATR0580G349 Amborella trichopoda HOM05D004476 ORTHO05D002200 3.7e-27 124.8 99 65.7
Glyma.13G102400 Glycine max HOM05D004476 ORTHO05D002200 3.7e-27 124.8 99 63.6
Glyma.17G056600 Glycine max HOM05D004476 ORTHO05D002200 3.7e-27 124.8 99 64.6
Sopen07g003040 Solanum pennellii HOM05D004476 ORTHO05D002200 3.7e-27 124.8 99 65.7
Phvul.003G157700 Phaseolus vulgaris HOM05D004476 ORTHO05D002200 4.8e-27 124.4 99 63.6
BcaB07g31613 Brassica carinata HOM05D004476 ORTHO05D002200 6.2e-27 124.0 99 60.6
PGSC0003DMG400018747 Solanum tuberosum HOM05D004476 ORTHO05D002200 6.2e-27 124.0 99 64.6
BolC9t54358H Brassica oleracea HOM05D004476 ORTHO05D002200 8.1e-27 123.6 98 61.2
Lj2g0014857 Lotus japonicus HOM05D004476 ORTHO05D002200 8.1e-27 123.6 99 63.6
BcaC04g22858 Brassica carinata HOM05D004476 ORTHO05D002200 1.1e-26 123.2 95 62.1
Nitab4.5_0010128g0020 Nicotiana tabacum HOM05D004476 ORTHO05D002200 1.1e-26 123.2 98 63.3
A09p12330 Brassica napus HOM05D004476 ORTHO05D002200 1.4e-26 122.9 95 62.1
C09p14540 Brassica napus HOM05D004476 ORTHO05D002200 1.4e-26 122.9 95 62.1
BraA09t36877Z Brassica rapa HOM05D004476 ORTHO05D002200 1.4e-26 122.9 95 62.1
Sed0012081 Sechium edule HOM05D004476 ORTHO05D002200 2.4e-26 122.1 95 63.2
Peaxi162Scf01558g00013 Petunia axillaris HOM05D004476 ORTHO05D002200 1.2e-25 119.8 100 63.0
DCAR_014680 Daucus carota HOM05D004476 ORTHO05D002200 2.0e-25 119.0 99 62.6
HPP92_021983 Vanilla planifolia HOM05D004476 ORTHO05D002200 2.6e-25 118.6 95 62.1
CAN.G1495.9 Capsicum annuum HOM05D004476 ORTHO05D002200 1.7e-24 115.9 100 62.0
Lsat_1_v5_gn_8_68841 Lactuca sativa HOM05D004476 ORTHO05D002200 5.5e-23 110.9 99 59.6
Nitab4.5_0000957g0040 Nicotiana tabacum HOM05D004476 ORTHO05D002200 1.6e-22 109.4 88 63.6
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 2.1e-22 109.0 96 59.4
RcHm_v2.0_Chr6g0255091 Rosa chinensis HOM05D004476 ORTHO05D002200 4.6e-22 107.8 89 69.7
Eucgr.F03858 Eucalyptus grandis HOM05D004476 ORTHO05D002200 3.0e-21 105.1 89 61.8
Zm00001eb389280 Zea mays HOM05D004476 ORTHO05D002200 3.0e-21 105.1 99 54.5
Hma1.2p1_0571F.1_g180790 Hydrangea macrophylla HOM05D004476 ORTHO05D002200 1.9e-20 102.4 86 62.8
SMO348G0029 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 5.6e-20 100.9 95 52.6
DCAR_017994 Daucus carota HOM05D004476 ORTHO05D002200 1.6e-19 99.4 99 54.5
Zm00001eb206870 Zea mays HOM05D004476 ORTHO05D002200 1.6e-19 99.4 99 54.5
Mapoly0038s0099 Marchantia polymorpha HOM05D004476 ORTHO05D002200 2.8e-19 98.6 92 54.3
Os02g0176400 Oryza sativa ssp. japonica HOM05D004476 ORTHO05D002200 3.7e-19 98.2 99 54.5
BolC7t46198H Brassica oleracea HOM05D004476 ORTHO05D002200 6.2e-19 97.4 71 69.0
CDE04G0988 Ceratophyllum demersum HOM05D004476 ORTHO05D002200 6.2e-19 97.4 73 65.8
Nn8g40538 Nelumbo nucifera HOM05D004476 ORTHO05D002200 4.0e-18 94.7 96 53.1
Pp3c12_21250 Physcomitrium patens HOM05D004476 ORTHO05D002200 5.3e-18 94.4 95 53.7
CBR_g46719 Chara braunii HOM05D004476 ORTHO05D002200 1.1e-15 86.7 78 53.8
RcHm_v2.0_Chr2g0106271 Rosa chinensis HOM05D004476 ORTHO05D002200 5.5e-15 84.3 58 79.3
SMO347G0074 Selaginella moellendorffii HOM05D004476 ORTHO05D002200 7.1e-15 84.0 96 47.9
HPP92_010317 Vanilla planifolia HOM05D004476 ORTHO05D002200 3.5e-14 81.6 58 70.7
AUR62027442 Chenopodium quinoa HOM05D004476 ORTHO05D002200 1.0e-13 80.1 58 67.2
Hund06695 Selenicereus undatus HOM05D004476 ORTHO05D002200 1.3e-13 79.7 58 67.2
C07p02850 Brassica napus HOM05D004476 ORTHO05D002200 5.1e-13 77.8 69 59.4
RcHm_v2.0_Chr3g0494811 Rosa chinensis HOM05D004476 ORTHO05D002200 5.1e-13 77.8 56 73.2
A07p01390 Brassica napus HOM05D004476 ORTHO05D002200 4.5e-09 64.7 51 62.7
Dinv25480 Davidia involucrata HOM05D000871 ORTHO05D000770 7.6e-09 63.9 42 69.0
Haze_24699 Corylus avellana HOM05D004476 ORTHO05D002200 1.0e-08 63.5 37 83.8
ECA236G3194 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.0e-08 63.5 55 58.2
Mapoly0059s0090 Marchantia polymorpha HOM05D005022 ORTHO05D002200 1.1e-07 60.1 93 39.8
SMO340G0185 Selaginella moellendorffii HOM05D005022 ORTHO05D002200 7.2e-07 57.4 80 37.5


User provided reference genes

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