Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.9e-57 225.7 120 100.0
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 4.5e-51 204.5 120 85.0
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.2e-50 202.2 120 83.3
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.5e-49 198.7 120 84.2
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 5.5e-49 197.6 120 84.2
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 2.9e-34 148.7 122 68.9
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.2e-32 143.3 119 66.4
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 6.7e-31 137.5 123 67.5
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.5e-27 124.8 84 71.4
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 3.8e-26 121.7 129 60.5
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 1.4e-23 113.2 86 66.3
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.6e-22 109.0 128 56.2
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 7.5e-22 107.5 131 55.0
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 4.8e-21 104.8 114 57.9
FAN17G0281 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.8e-21 104.8 92 60.9
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 6.3e-21 104.4 128 54.7
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 6.3e-21 104.4 113 53.1
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.4e-20 103.2 109 56.0
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 2.4e-20 102.4 113 53.1
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 4.1e-20 101.7 113 54.0
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 5.3e-20 101.3 112 52.7
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 9.1e-20 100.5 122 54.9
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.6e-19 99.8 109 54.1
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 3.5e-19 98.6 124 52.4
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 4.5e-19 98.2 124 54.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.3e-18 96.7 113 51.3
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.7e-18 96.3 121 47.9
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.7e-18 96.3 118 52.5
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.2e-18 95.9 133 51.1
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 2.9e-18 95.5 117 52.1
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.8e-18 95.1 127 52.0
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.8e-18 95.1 127 52.0
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 6.5e-18 94.4 111 54.1
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 8.5e-18 94.0 109 53.2
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.1e-17 93.6 111 50.5
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.5e-17 93.2 119 51.3
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.9e-17 92.8 117 52.1
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.5e-17 92.4 111 49.5
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 2.5e-17 92.4 111 49.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.2e-17 92.0 117 52.1
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.2e-17 91.7 117 51.3
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 5.5e-17 91.3 120 50.8
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 9.4e-17 90.5 117 52.1
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.2e-16 90.1 120 49.2
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.6e-16 89.7 125 51.2
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.1e-16 89.4 114 52.6
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.7e-16 89.0 117 50.4
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.6e-16 88.6 118 47.5
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.6e-16 88.6 117 51.3
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.7e-16 88.2 117 48.7
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.0e-16 87.4 127 50.4
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.0e-15 87.0 122 50.0
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.0e-15 87.0 118 46.6
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.4e-15 86.7 117 47.9
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.4e-15 86.7 118 50.8
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.8e-15 86.3 114 51.8
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.3e-15 85.9 119 52.9
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.3e-15 85.9 111 49.5
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 4.0e-15 85.1 121 48.8
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 5.2e-15 84.7 110 48.2
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.8e-15 84.3 110 48.2
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.8e-15 84.3 111 46.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 8.8e-15 84.0 108 46.3
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 8.8e-15 84.0 118 50.0
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.2e-14 83.6 113 48.7
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 2.0e-14 82.8 111 49.5
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 2.0e-14 82.8 128 50.0
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 3.4e-14 82.0 124 54.8
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.4e-14 81.6 124 47.6
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 5.7e-14 81.3 106 49.1
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 9.8e-14 80.5 117 51.3
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.8e-14 80.5 129 46.5
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.8e-14 80.5 124 46.8
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 9.8e-14 80.5 127 48.0
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 9.8e-14 80.5 110 48.2
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 9.8e-14 80.5 111 49.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 9.8e-14 80.5 125 43.2
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 9.8e-14 80.5 118 47.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.3e-13 80.1 110 45.5
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.3e-13 80.1 110 47.3
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 1.3e-13 80.1 119 46.2
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.3e-13 80.1 110 47.3
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 1.7e-13 79.7 109 45.9
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-13 79.7 109 50.5
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.7e-13 79.7 112 48.2
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.2e-13 79.3 109 50.5
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.8e-13 79.0 107 52.3
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 2.8e-13 79.0 110 47.3
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.7e-13 78.6 114 44.7
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 3.7e-13 78.6 117 41.9
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 3.7e-13 78.6 117 41.9
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 3.7e-13 78.6 113 46.9
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 6.3e-13 77.8 124 50.8
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.3e-13 77.4 114 45.6
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 8.3e-13 77.4 112 44.6
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-12 77.0 100 50.0
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.4e-12 76.6 112 43.8
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.4e-12 76.6 120 50.8
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.8e-12 76.3 111 44.1
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.8e-12 76.3 101 47.5
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.8e-12 76.3 115 47.8
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 2.4e-12 75.9 119 42.0
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.4e-12 75.9 104 48.1
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.1e-12 75.5 116 46.6
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 4.1e-12 75.1 109 45.0
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 4.1e-12 75.1 117 46.2
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.1e-12 75.1 120 44.2
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 5.4e-12 74.7 118 47.5
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.4e-12 74.7 126 44.4
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 7.0e-12 74.3 112 45.5
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 7.0e-12 74.3 114 45.6
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 7.0e-12 74.3 101 45.5
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 7.0e-12 74.3 109 45.0
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 9.1e-12 73.9 106 48.1
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.2e-11 73.6 105 45.7
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.2e-11 73.6 109 47.7
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.6e-11 73.2 119 42.0
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 2.0e-11 72.8 108 50.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 2.7e-11 72.4 139 45.3
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 2.7e-11 72.4 135 45.2
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 2.7e-11 72.4 107 43.0
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.7e-11 72.4 117 43.6
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.7e-11 72.4 116 43.1
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.5e-11 71.6 113 47.8
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 4.5e-11 71.6 114 43.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 4.5e-11 71.6 114 47.4
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 5.9e-11 71.2 100 46.0
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 5.9e-11 71.2 105 43.8
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 7.7e-11 70.9 111 45.9
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 7.7e-11 70.9 111 45.0
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 7.7e-11 70.9 114 44.7
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 7.7e-11 70.9 114 42.1
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 7.7e-11 70.9 114 43.9
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.3e-10 70.1 113 46.9
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.3e-10 70.1 105 48.6
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 1.7e-10 69.7 105 42.9
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.7e-10 69.7 114 42.1
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 1.7e-10 69.7 105 42.9
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.7e-10 69.7 121 43.0
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 2.3e-10 69.3 105 42.9
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.3e-10 69.3 133 42.9
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.9e-10 68.9 105 45.7
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.8e-10 68.6 110 45.5
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.0e-10 68.2 115 40.0
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 6.6e-10 67.8 108 43.5
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 6.6e-10 67.8 105 41.9
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.6e-10 67.8 131 41.2
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.6e-10 67.8 131 41.2
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.6e-10 67.8 109 43.1
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 6.6e-10 67.8 109 43.1
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 8.6e-10 67.4 116 44.8
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 1.1e-09 67.0 106 42.5
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.1e-09 67.0 117 41.0
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.5e-09 66.6 102 51.0
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.9e-09 66.2 120 38.3
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.5e-09 65.9 120 37.5
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.3e-09 65.5 120 37.5
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 4.2e-09 65.1 113 38.9
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 7.2e-09 64.3 111 40.5
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 9.5e-09 63.9 100 42.0
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 9.5e-09 63.9 100 42.0
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 9.5e-09 63.9 113 38.9
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 9.5e-09 63.9 106 42.5
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.2e-08 63.5 120 37.5
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.2e-08 63.5 120 37.5
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.2e-08 63.5 120 37.5
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 1.6e-08 63.2 121 38.0
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 4.7e-08 61.6 137 40.1
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 3.0e-07 58.9 117 36.8
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 3.0e-07 58.9 115 42.6
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 4.0e-07 58.5 118 39.8
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 6.8e-07 57.8 111 41.4
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.4e-06 55.1 128 36.7
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 4.4e-06 55.1 122 40.2


User provided reference genes

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