Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 6.6e-214 747.3 427 100.0
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 3.4e-125 452.6 518 56.2
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.9e-124 448.7 514 56.0
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 5.4e-123 445.3 464 62.7
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.8e-121 439.1 465 63.4
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.4e-117 426.0 528 57.2
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 1.1e-115 421.0 433 61.2
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 4.4e-109 399.1 432 58.1
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.0e-77 293.9 265 65.7
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 2.6e-61 240.4 435 46.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.3e-57 228.0 438 45.7
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.1e-56 224.9 504 36.1
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.0e-49 201.8 438 37.7
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.0e-49 201.8 431 36.9
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 3.0e-49 200.3 443 36.8
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 3.8e-44 183.3 452 36.5
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.4e-43 181.4 446 35.7
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.4e-43 181.4 467 34.5
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 3.2e-43 180.3 478 33.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.5e-43 179.5 446 42.6
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 9.4e-43 178.7 470 34.9
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 1.2e-42 178.3 449 33.2
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 3.6e-42 176.8 460 35.0
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.4e-41 174.9 430 42.3
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 3.3e-40 170.2 463 34.8
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 1.3e-39 168.3 448 39.1
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 1.8e-38 164.5 450 32.7
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 5.3e-38 162.9 419 34.6
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 5.3e-38 162.9 453 33.3
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.6e-37 160.6 435 32.4
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 4.5e-37 159.8 444 35.6
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 5.9e-37 159.5 279 41.9
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 3.8e-36 156.8 423 35.7
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 3.2e-35 153.7 468 32.3
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 5.5e-35 152.9 443 32.3
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 5.5e-35 152.9 443 32.3
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 9.4e-35 152.1 433 32.6
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 1.6e-34 151.4 485 31.3
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.5e-32 144.8 435 38.4
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.4e-32 143.3 433 30.9
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 9.7e-32 142.1 434 30.6
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.8e-31 140.6 434 29.5
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 3.7e-31 140.2 487 36.3
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 3.7e-31 140.2 434 29.7
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.1e-30 138.7 171 46.8
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.4e-30 138.3 497 36.0
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 1.4e-30 138.3 226 42.5
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.8e-30 137.9 484 33.5
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 1.8e-30 137.9 465 37.8
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 1.8e-30 137.9 435 40.0
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.8e-30 137.9 441 29.5
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 2.4e-30 137.5 134 56.7
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 2.4e-30 137.5 104 65.4
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 3.1e-30 137.1 495 31.7
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 4.1e-30 136.7 440 32.3
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 4.1e-30 136.7 474 36.7
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 5.3e-30 136.3 456 31.8
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 7.0e-30 136.0 424 33.3
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 7.0e-30 136.0 424 33.3
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 1.2e-29 135.2 491 35.8
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.2e-29 135.2 229 42.4
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 2.0e-29 134.4 485 30.1
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 2.0e-29 134.4 445 29.2
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 2.6e-29 134.0 425 37.9
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 5.9e-29 132.9 420 33.8
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 1.0e-28 132.1 422 31.8
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.3e-28 131.7 215 42.3
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 1.7e-28 131.3 454 30.0
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.2e-28 131.0 435 32.2
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 2.2e-28 131.0 474 28.5
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.8e-28 130.2 433 28.9
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 3.8e-28 130.2 237 41.8
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 3.8e-28 130.2 434 28.3
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 5.0e-28 129.8 444 30.6
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 6.5e-28 129.4 215 41.4
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 6.5e-28 129.4 120 55.0
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.5e-27 128.3 426 28.9
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.5e-27 128.3 437 30.0
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 2.5e-27 127.5 488 33.4
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 4.2e-27 126.7 129 51.9
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 7.2e-27 125.9 137 53.3
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 7.2e-27 125.9 492 26.6
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 9.4e-27 125.6 479 31.7
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 9.4e-27 125.6 479 31.7
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 9.4e-27 125.6 454 30.2
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 9.4e-27 125.6 463 27.6
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.2e-26 125.2 103 62.1
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.2e-26 125.2 196 43.4
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.1e-26 124.4 251 38.2
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 2.7e-26 124.0 484 31.8
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 2.7e-26 124.0 451 28.6
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 3.6e-26 123.6 492 32.9
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 3.6e-26 123.6 137 52.6
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 6.1e-26 122.9 178 46.1
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 8.0e-26 122.5 432 28.5
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.0e-25 122.1 200 42.0
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 1.0e-25 122.1 410 30.7
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.4e-25 121.7 314 34.4
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 2.3e-25 120.9 447 30.9
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 2.3e-25 120.9 137 52.6
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.0e-25 120.6 285 39.3
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 4.0e-25 120.2 175 45.1
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 5.2e-25 119.8 159 44.0
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 5.2e-25 119.8 474 28.5
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.2e-24 118.6 247 34.4
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.5e-24 118.2 205 41.5
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.5e-24 118.2 438 27.2
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 2.0e-24 117.9 465 30.3
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 2.6e-24 117.5 452 29.0
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 5.7e-24 116.3 283 36.7
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.2e-23 114.4 437 28.1
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 4.8e-23 113.2 514 32.7
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.4e-22 111.7 434 28.8
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.8e-22 111.3 175 41.7
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.8e-22 111.3 527 27.1
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.1e-22 110.5 474 29.1
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 4.1e-22 110.2 440 32.0
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 5.4e-22 109.8 440 32.0
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 5.4e-22 109.8 504 28.8
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 7.0e-22 109.4 439 27.6
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 2.0e-21 107.8 511 32.5
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 2.7e-21 107.5 292 31.5
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 3.5e-21 107.1 193 40.4
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 4.5e-21 106.7 164 42.7
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.0e-20 105.5 446 28.7
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.7e-20 104.8 129 45.7
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 2.9e-20 104.0 442 26.2
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 2.9e-20 104.0 101 51.5
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 7.2e-19 99.4 299 32.8
Cfa008363 Carpinus fangiana HOM05D004833 ORTHO05D005671 2.7e-18 97.4 202 38.1
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 6.1e-18 96.3 453 26.5
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.4e-17 95.1 105 44.8
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 2.6e-16 90.9 136 41.2
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 1.7e-15 88.2 150 38.7
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 1.3e-12 78.6 97 46.4
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.9e-11 74.7 107 43.0
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 4.2e-11 73.6 52 65.4
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 7.2e-11 72.8 103 42.7
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 2.1e-10 71.2 429 24.7
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 4.7e-10 70.1 108 37.0
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 8.0e-10 69.3 258 27.1
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 2.3e-09 67.8 101 37.6
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 1.1e-06 58.9 76 42.1
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.4e-06 58.5 75 42.7
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 3.2e-06 57.4 110 34.5
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 4.1e-06 57.0 105 33.3
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 7.0e-06 56.2 80 37.5


User provided reference genes

Program Settings