Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 2.5e-75 285.4 153 100.0
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-72 275.0 154 97.4
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-72 275.0 154 97.4
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-71 272.7 154 96.1
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 5.0e-71 271.2 154 96.1
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.2e-70 268.5 151 96.7
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 5.5e-70 267.7 152 96.1
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 6.7e-68 260.8 154 93.5
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-56 222.6 122 93.4
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-56 222.6 122 95.9
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-56 222.2 122 94.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.7e-56 220.7 122 94.3
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-55 219.9 122 92.6
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-55 219.9 122 92.6
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-55 219.2 122 92.6
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.5e-54 216.5 122 91.8
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.2e-54 215.3 121 92.6
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.2e-52 208.0 114 93.9
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.2e-50 202.6 122 87.7
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 6.3e-50 201.1 122 86.1
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-49 200.3 122 86.1
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.8e-49 199.5 122 85.2
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.4e-49 198.0 122 86.1
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 7.0e-49 197.6 122 84.4
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 8.5e-47 190.7 118 82.2
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.2e-46 188.7 121 78.5
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.2e-45 186.8 115 81.7
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.6e-45 186.4 115 80.9
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.6e-45 186.4 116 79.3
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.1e-45 186.0 115 83.5
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.7e-45 185.7 115 80.0
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 3.6e-45 185.3 122 77.9
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.7e-45 184.9 116 79.3
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 6.1e-45 184.5 118 77.1
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 6.1e-45 184.5 115 81.7
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 8.0e-45 184.1 123 75.6
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 8.0e-45 184.1 122 77.9
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.0e-44 183.7 141 70.9
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.4e-44 183.3 116 79.3
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.8e-44 183.0 121 76.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.8e-44 183.0 115 81.7
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.8e-44 183.0 116 78.4
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.8e-44 183.0 119 77.3
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.3e-44 182.6 115 81.7
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 2.3e-44 182.6 115 80.9
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 2.3e-44 182.6 114 81.6
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.3e-44 182.6 114 81.6
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 3.0e-44 182.2 115 80.0
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 3.0e-44 182.2 115 80.0
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 3.0e-44 182.2 115 80.0
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 4.0e-44 181.8 116 77.6
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 5.2e-44 181.4 115 79.1
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 6.8e-44 181.0 115 80.0
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 8.8e-44 180.6 114 82.5
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 8.8e-44 180.6 116 76.7
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.2e-43 180.3 124 75.8
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.2e-43 180.3 115 79.1
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.5e-43 179.9 115 81.7
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.5e-43 179.9 116 77.6
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 2.0e-43 179.5 115 79.1
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.0e-43 179.5 115 78.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 2.6e-43 179.1 114 79.8
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.6e-43 179.1 115 78.3
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 3.4e-43 178.7 119 76.5
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 3.4e-43 178.7 119 76.5
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 3.4e-43 178.7 117 77.8
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 3.4e-43 178.7 116 75.0
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 3.4e-43 178.7 116 75.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.4e-43 178.3 115 78.3
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 4.4e-43 178.3 122 75.4
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 5.7e-43 177.9 155 67.1
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 7.5e-43 177.6 115 80.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 7.5e-43 177.6 114 78.1
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.5e-43 177.6 115 76.5
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 9.8e-43 177.2 114 79.8
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 9.8e-43 177.2 122 76.2
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-42 176.8 119 75.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.3e-42 176.8 119 75.6
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-42 176.8 119 75.6
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-42 176.8 119 75.6
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-42 176.8 119 75.6
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.3e-42 176.8 119 75.6
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.3e-42 176.8 119 75.6
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.3e-42 176.8 119 75.6
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.3e-42 176.8 115 76.5
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.3e-42 176.8 114 78.1
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.3e-42 176.8 115 76.5
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 1.7e-42 176.4 119 75.6
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.7e-42 176.4 120 75.0
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 2.2e-42 176.0 122 73.8
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 2.2e-42 176.0 119 73.1
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 2.2e-42 176.0 115 75.7
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.2e-42 176.0 120 73.3
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.2e-42 176.0 115 78.3
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 2.8e-42 175.6 122 74.6
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.7e-42 175.3 120 73.3
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.7e-42 175.3 115 78.3
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 4.9e-42 174.9 119 76.5
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 4.9e-42 174.9 114 77.2
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 4.9e-42 174.9 122 75.4
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 6.3e-42 174.5 115 76.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 8.3e-42 174.1 119 74.8
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 8.3e-42 174.1 119 74.8
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 8.3e-42 174.1 119 74.8
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 8.3e-42 174.1 114 78.1
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 8.3e-42 174.1 111 79.3
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-41 173.7 114 78.1
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-41 173.7 114 78.1
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-41 173.7 114 78.1
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.1e-41 173.7 114 76.3
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.4e-41 173.3 114 76.3
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.4e-41 172.6 114 75.4
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.4e-41 172.6 114 78.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 2.4e-41 172.6 114 75.4
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 4.1e-41 171.8 114 77.2
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 4.1e-41 171.8 114 77.2
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.2e-40 170.2 119 73.9
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.6e-40 169.9 123 73.2
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.6e-40 169.9 114 75.4
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.0e-40 169.5 115 79.1
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.0e-40 169.5 114 75.4
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.7e-40 169.1 125 69.6
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 5.9e-40 167.9 147 64.6
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.3e-39 166.8 123 73.2
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.0e-39 164.9 116 71.6
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.0e-39 164.9 116 71.6
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 5.0e-39 164.9 121 70.2
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.1e-38 163.7 155 59.4
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.0e-35 152.9 125 64.0
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 2.2e-34 149.4 115 65.2
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 6.4e-34 147.9 115 66.1
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.4e-34 147.9 119 60.5
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 8.3e-34 147.5 115 62.6
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 8.3e-34 147.5 157 54.8
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 7.0e-33 144.4 115 60.9
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-32 143.7 115 66.1
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.0e-32 142.9 88 84.1
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.1e-30 137.1 115 65.2
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.9e-30 136.3 87 80.5
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-30 136.3 78 94.9
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-30 136.3 78 94.9
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-30 136.3 78 94.9
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 7.3e-30 134.4 88 79.5
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-27 125.9 72 95.8
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 3.4e-27 125.6 96 74.0
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 2.0e-24 116.3 209 38.3
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.6e-23 110.9 70 78.6
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 2.1e-21 106.3 77 72.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.5e-19 100.1 114 43.9
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 2.0e-19 99.8 123 44.7
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.6e-19 99.4 64 78.1
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.2e-18 96.3 61 68.9
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.0e-15 87.4 59 67.8
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-15 87.0 59 67.8
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.3e-14 82.4 59 64.4
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 4.3e-14 82.0 117 38.5
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.1e-12 77.4 69 65.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 6.8e-12 74.7 108 35.2
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 6.8e-12 74.7 69 63.8
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 8.9e-12 74.3 51 66.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 9.9e-11 70.9 54 68.5
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.2e-10 69.7 53 69.8
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.2e-10 69.7 53 69.8
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 4.1e-09 65.5 38 92.1
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.3e-06 55.8 47 55.3


User provided reference genes

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