Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0389651 Rosa chinensis HOM05D001159 ORTHO05D344817 2.2e-54 215.3 104 100.0
RcHm_v2.0_Chr5g0051941 Rosa chinensis HOM05D001159 ORTHO05D009291 1.8e-19 99.4 122 46.7
MD04G1211400 Malus domestica HOM05D001159 ORTHO05D009291 1.3e-17 93.2 122 44.3
FAN11G2003 Fragaria x ananassa HOM05D001159 ORTHO05D009291 1.6e-17 92.8 122 44.3
FAN16G0506 Fragaria x ananassa HOM05D001159 ORTHO05D009291 1.6e-17 92.8 122 44.3
FAN21G2413 Fragaria x ananassa HOM05D001159 ORTHO05D009291 1.6e-17 92.8 122 44.3
FAN25G0507 Fragaria x ananassa HOM05D001159 ORTHO05D009291 2.8e-17 92.0 71 60.6
Prupe.1G027900 Prunus persica HOM05D001159 ORTHO05D009291 2.8e-17 92.0 122 44.3
FvH4_3g28910 Fragaria vesca HOM05D001159 ORTHO05D009291 4.8e-17 91.3 122 44.3
QL06p015227 Quercus lobata HOM05D001159 ORTHO05D009291 4.8e-17 91.3 122 45.1
Manes.15G036300 Manihot esculenta HOM05D001159 ORTHO05D009291 1.1e-16 90.1 122 41.8
Sed0000736 Sechium edule HOM05D001159 ORTHO05D009291 1.4e-16 89.7 122 40.2
Sabra10G0065100 Salix brachista HOM05D001159 ORTHO05D009291 1.2e-15 86.7 71 56.3
Gohir.A09G222500 Gossypium hirsutum HOM05D001159 ORTHO05D009291 2.0e-15 85.9 69 58.0
CANSAT78G1798 Cannabis sativa HOM05D001159 ORTHO05D009291 2.6e-15 85.5 122 41.8
Gohir.D09G224600 Gossypium hirsutum HOM05D001159 ORTHO05D009291 2.6e-15 85.5 69 58.0
Gorai.006G246100 Gossypium raimondii HOM05D001159 ORTHO05D009291 2.6e-15 85.5 69 58.0
COL.COLO4_15775 Corchorus olitorius HOM05D001159 ORTHO05D009291 4.5e-15 84.7 69 55.1
TAR362G0894 Trochodendron aralioides HOM05D001159 ORTHO05D009291 4.5e-15 84.7 122 41.0
Potri.008G161300 Populus trichocarpa HOM05D001159 ORTHO05D009291 7.7e-15 84.0 115 40.0
arahy.Tifrunner.gnm1.ann1.51DFL0 Arachis hypogaea HOM05D001159 ORTHO05D009291 1.0e-14 83.6 122 37.7
Dinv14080 Davidia involucrata HOM05D001159 ORTHO05D009291 1.0e-14 83.6 122 40.2
Duzib212G0622 Durio zibethinus HOM05D001159 ORTHO05D009291 1.7e-14 82.8 122 38.5
Lj6C654T4 Lonicera japonica HOM05D001159 ORTHO05D009291 1.7e-14 82.8 122 39.3
Potri.010G078200 Populus trichocarpa HOM05D001159 ORTHO05D009291 1.7e-14 82.8 71 53.5
Thecc.04G245000 Theobroma cacao HOM05D001159 ORTHO05D009291 1.7e-14 82.8 122 39.3
arahy.Tifrunner.gnm1.ann1.XUW287 Arachis hypogaea HOM05D001159 ORTHO05D009291 2.2e-14 82.4 122 37.7
CiPaw.02G117100 Carya illinoinensis HOM05D001159 ORTHO05D009291 2.2e-14 82.4 122 39.3
Haze_11276 Corylus avellana HOM05D001159 ORTHO05D009291 2.2e-14 82.4 71 56.3
Sabra08G0123100 Salix brachista HOM05D001159 ORTHO05D009291 2.2e-14 82.4 115 38.3
TWI53G1659 Tripterygium wilfordii HOM05D001159 ORTHO05D009291 2.2e-14 82.4 71 53.5
Atru.chr4.2268 Acer truncatum HOM05D001159 ORTHO05D009291 2.9e-14 82.0 71 50.7
Cfa008393 Carpinus fangiana HOM05D001159 ORTHO05D009291 3.8e-14 81.6 71 56.3
Psat5g102120 Pisum sativum HOM05D001159 ORTHO05D009291 3.8e-14 81.6 71 52.1
vmacro08404 Vaccinium macrocarpon HOM05D001159 ORTHO05D009291 3.8e-14 81.6 69 56.5
Aqoxy2G03547 Aquilegia oxysepala HOM05D001159 ORTHO05D009291 5.0e-14 81.3 122 38.5
TWI09G1422 Tripterygium wilfordii HOM05D001159 ORTHO05D009291 6.5e-14 80.9 122 38.5
MELO3C026763.2 Cucumis melo HOM05D001159 ORTHO05D009291 1.1e-13 80.1 122 36.9
Ca_16392_v3 Cicer arietinum L. HOM05D001159 ORTHO05D009291 1.9e-13 79.3 71 52.1
ClCG06G006630 Citrullus lanatus HOM05D001159 ORTHO05D009291 1.9e-13 79.3 122 36.9
CsaV3_2G013200 Cucumis sativus L. HOM05D001159 ORTHO05D009291 1.9e-13 79.3 122 36.9
Lalb_Chr08g0230381 Lupinus albus HOM05D001159 ORTHO05D009291 1.9e-13 79.3 71 49.3
Phvul.001G267800 Phaseolus vulgaris HOM05D001159 ORTHO05D009291 1.9e-13 79.3 115 38.3
MSTRG.9930 Avicennia marina HOM05D001159 ORTHO05D009291 2.5e-13 79.0 71 49.3
Ciclev10004380m.g Citrus clementina HOM05D001159 ORTHO05D009291 2.5e-13 79.0 68 52.9
DCAR_030714 Daucus carota HOM05D001159 ORTHO05D009291 2.5e-13 79.0 122 38.5
TPR.G14712 Trifolium pratense HOM05D001159 ORTHO05D009291 2.5e-13 79.0 122 36.9
Sc19g0003850 Simmondsia chinensis HOM05D001159 ORTHO05D009291 3.2e-13 78.6 71 52.1
CAN.G638.75 Capsicum annuum HOM05D001159 ORTHO05D009291 5.5e-13 77.8 71 53.5
Lj6g0014271 Lotus japonicus HOM05D001159 ORTHO05D009291 5.5e-13 77.8 122 34.4
Migut.G00421 Erythranthe guttata HOM05D001159 ORTHO05D009291 7.2e-13 77.4 71 46.5
Rhsim04G0193500 Rhododendron simsii HOM05D001159 ORTHO05D009291 7.2e-13 77.4 69 52.2
ECA233G1119 Erigeron canadensis HOM05D001159 ORTHO05D009291 9.4e-13 77.0 72 48.6
HanXRQChr15g0468741 Helianthus annuus HOM05D001159 ORTHO05D009291 9.4e-13 77.0 72 50.0
Medtr1g105605 Medicago truncatula HOM05D001159 ORTHO05D009291 9.4e-13 77.0 123 36.6
Solyc03g005380.3 Solanum lycopersicum HOM05D001159 ORTHO05D009291 1.6e-12 76.3 71 52.1
Sopen03g001410 Solanum pennellii HOM05D001159 ORTHO05D009291 1.6e-12 76.3 71 52.1
unitig_22.g6790 Utricularia gibba HOM05D001159 ORTHO05D009291 1.6e-12 76.3 69 49.3
Cc03_g04700 Coffea canephora HOM05D001159 ORTHO05D009291 2.1e-12 75.9 69 50.7
Hund19705 Selenicereus undatus HOM05D001159 ORTHO05D009291 2.1e-12 75.9 69 50.7
Eucgr.H03169 Eucalyptus grandis HOM05D001159 ORTHO05D009291 2.7e-12 75.5 71 49.3
Nitab4.5_0000436g0020 Nicotiana tabacum HOM05D001159 ORTHO05D009291 4.6e-12 74.7 71 50.7
Actinidia04488 Actinidia chinensis HOM05D001159 ORTHO05D009291 6.1e-12 74.3 69 49.3
EL10Ac6g15473 Beta vulgaris HOM05D001159 ORTHO05D009291 6.1e-12 74.3 69 49.3
CSS0034704 Camellia sinensis var. sinensis HOM05D001159 ORTHO05D009291 6.1e-12 74.3 69 49.3
AUR62029455 Chenopodium quinoa HOM05D001159 ORTHO05D009291 7.9e-12 73.9 69 47.8
Nn1g02574 Nelumbo nucifera HOM05D001159 ORTHO05D009291 1.0e-11 73.6 71 50.7
Oeu032609.1 Olea europaea HOM05D001159 ORTHO05D009291 1.4e-11 73.2 122 36.9
THA.LOC104801100 Tarenaya hassleriana HOM05D001159 ORTHO05D009291 1.4e-11 73.2 69 47.8
AT5G43670 Arabidopsis thaliana HOM05D001159 ORTHO05D009291 1.8e-11 72.8 122 35.2
AUR62003375 Chenopodium quinoa HOM05D001159 ORTHO05D009291 1.8e-11 72.8 122 34.4
Lsat_1_v5_gn_5_67200 Lactuca sativa HOM05D001159 ORTHO05D009291 1.8e-11 72.8 72 47.2
CARHR179940 Cardamine hirsuta HOM05D001159 ORTHO05D009291 3.0e-11 72.0 69 46.4
Nitab4.5_0008902g0010 Nicotiana tabacum HOM05D001159 ORTHO05D009291 3.9e-11 71.6 71 49.3
Aa31LG11G9570 Aethionema arabicum HOM05D001159 ORTHO05D009291 5.1e-11 71.2 122 35.2
Carub.0008s0498 Capsella rubella HOM05D001159 ORTHO05D009291 5.1e-11 71.2 69 46.4
Sp2g08470 Schrenkiella parvula HOM05D001159 ORTHO05D009291 5.1e-11 71.2 69 46.4
Peaxi162Scf00017g02636 Petunia axillaris HOM05D001159 ORTHO05D009291 6.7e-11 70.9 68 50.0
AL8G16580 Arabidopsis lyrata HOM05D001159 ORTHO05D009291 2.5e-10 68.9 69 44.9
BcaC06g34637 Brassica carinata HOM05D001159 ORTHO05D009291 2.5e-10 68.9 69 46.4
C07p26240 Brassica napus HOM05D001159 ORTHO05D009291 2.5e-10 68.9 69 46.4
BolC7t43152H Brassica oleracea HOM05D001159 ORTHO05D009291 2.5e-10 68.9 69 46.4
Thhalv10003153m.g Eutrema salsugineum HOM05D001159 ORTHO05D009291 2.5e-10 68.9 69 46.4
Ah.03g148700 Amaranthus hybridus HOM05D001159 ORTHO05D009291 3.3e-10 68.6 69 47.8
PGR004G0320 Punica granatum HOM05D001159 ORTHO05D009291 3.3e-10 68.6 69 46.4
A06p47760 Brassica napus HOM05D001159 ORTHO05D009291 4.3e-10 68.2 69 46.4
BraA06t27644Z Brassica rapa HOM05D001159 ORTHO05D009291 4.3e-10 68.2 69 46.4
MBI11_g02058_MAGBIO Magnolia biondii HOM05D001159 ORTHO05D009291 4.3e-10 68.2 122 33.6
SalBow2G0394 Salvia bowleyana HOM05D001159 ORTHO05D009291 4.3e-10 68.2 71 45.1
BcaC06g31684 Brassica carinata HOM05D001159 ORTHO05D009291 5.7e-10 67.8 69 44.9
Glyma.18G001400 Glycine max HOM05D001159 ORTHO05D009291 7.4e-10 67.4 115 34.8
SHI00591 Sapria himalayana HOM05D001159 ORTHO05D009291 3.7e-09 65.1 71 43.7
SGA_v2.0_scaffold236G43757 Striga asiatica HOM05D001159 ORTHO05D009291 3.7e-09 65.1 71 45.1
HPP92_024857 Vanilla planifolia HOM05D001159 ORTHO05D009291 5.3e-08 61.2 69 40.6
Cpa.g.sc375.2 Carica papaya HOM05D001159 ORTHO05D009291 1.5e-07 59.7 98 38.8
Zm00001eb215130 Zea mays HOM05D001159 ORTHO05D009291 1.5e-07 59.7 71 39.4
SEGI_20599 Sequoiadendron giganteum HOM05D001159 ORTHO05D009291 4.5e-07 58.2 68 38.2
Os03g0742800 Oryza sativa ssp. japonica HOM05D001159 ORTHO05D009291 1.7e-06 56.2 71 40.8
ATR0665G447 Amborella trichopoda HOM05D001159 ORTHO05D009291 2.9e-06 55.5 59 44.1
Zm00001eb056860 Zea mays HOM05D001159 ORTHO05D009291 2.9e-06 55.5 71 36.6


User provided reference genes

Program Settings