Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 2.4e-117 425.6 230 100.0
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.7e-105 385.6 230 88.3
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 7.9e-105 384.0 230 87.8
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 3.1e-101 372.1 230 87.0
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.0e-92 342.8 217 85.3
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 6.5e-91 337.8 230 79.1
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 9.7e-79 297.4 229 69.4
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 2.2e-75 286.2 228 68.4
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 2.2e-75 286.2 229 68.6
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 1.5e-74 283.5 248 64.1
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 1.9e-74 283.1 228 68.0
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 3.2e-74 282.3 231 68.0
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 4.2e-74 282.0 231 68.4
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 9.4e-74 280.8 231 68.0
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 4.7e-73 278.5 230 66.1
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 4.7e-73 278.5 231 67.1
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 5.7e-71 271.6 230 68.7
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 4.8e-70 268.5 229 64.2
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 2.4e-69 266.2 196 74.5
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 2.4e-69 266.2 246 60.2
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 4.1e-69 265.4 233 64.8
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 2.0e-68 263.1 229 61.1
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 3.5e-68 262.3 229 62.9
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 1.0e-67 260.8 244 59.0
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 1.5e-66 256.9 229 60.7
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 1.5e-66 256.9 229 59.4
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 3.3e-66 255.8 229 59.8
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 9.5e-66 254.2 296 53.0
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 9.5e-66 254.2 228 61.0
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 1.6e-65 253.4 243 57.2
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 3.6e-65 252.3 250 55.6
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.0e-64 250.8 238 58.8
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 3.0e-64 249.2 232 58.6
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 6.8e-64 248.1 226 61.5
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 6.8e-64 248.1 230 60.4
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 8.9e-64 247.7 250 54.4
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 2.0e-63 246.5 250 54.0
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 5.7e-63 245.0 229 59.4
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 7.5e-63 244.6 250 55.2
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 7.5e-63 244.6 215 60.0
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 4.9e-62 241.9 241 55.6
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 6.3e-62 241.5 204 66.2
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 1.1e-61 240.7 238 56.7
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 7.0e-61 238.0 237 56.5
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 4.5e-60 235.3 255 51.4
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 5.9e-60 235.0 228 57.0
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.0e-59 234.2 228 57.0
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 1.3e-59 233.8 237 55.7
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 1.7e-59 233.4 232 59.5
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 5.0e-59 231.9 237 55.3
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 5.0e-59 231.9 255 51.4
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 6.6e-59 231.5 177 72.3
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 1.1e-58 230.7 230 57.0
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 1.5e-58 230.3 227 55.9
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 9.5e-58 227.6 244 54.9
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 2.1e-57 226.5 235 55.7
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 6.1e-57 224.9 229 56.8
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 8.0e-57 224.6 244 54.1
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 4.0e-56 222.2 256 48.8
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 5.2e-56 221.9 242 50.8
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 6.8e-56 221.5 244 51.2
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 3.4e-55 219.2 248 50.0
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 4.4e-55 218.8 195 63.1
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 9.8e-55 217.6 232 53.4
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 2.9e-54 216.1 241 56.4
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 2.9e-54 216.1 203 58.6
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 1.4e-53 213.8 229 52.4
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 1.9e-53 213.4 195 61.5
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 2.4e-53 213.0 211 56.9
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 2.4e-53 213.0 236 52.1
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.4e-53 213.0 230 51.7
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 3.2e-53 212.6 228 53.9
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 1.2e-52 210.7 245 51.4
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 2.7e-52 209.5 256 48.0
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 3.3e-50 202.6 285 47.0
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 9.5e-50 201.1 233 50.2
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 2.3e-48 196.4 202 55.4
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 4.4e-47 192.2 199 54.3
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 4.9e-46 188.7 224 47.3
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 9.2e-45 184.5 239 45.2
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 1.7e-43 180.3 228 46.1
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 1.9e-42 176.8 229 45.9
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 2.5e-42 176.4 228 45.6
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 2.5e-42 176.4 228 45.6
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 2.5e-42 176.4 228 45.6
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 3.3e-42 176.0 229 45.4
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 9.5e-42 174.5 228 45.2
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 1.2e-41 174.1 228 44.7
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 2.1e-41 173.3 229 45.4
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 1.1e-40 171.0 229 45.4
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 2.3e-40 169.9 228 45.6
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 2.3e-40 169.9 228 44.3
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 2.2e-38 163.3 260 40.0
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 3.7e-38 162.5 196 48.0
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 3.7e-38 162.5 218 48.2
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 7.1e-37 158.3 225 47.1
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.7e-35 153.7 269 38.7
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 3.0e-35 152.9 227 41.9
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 3.0e-35 152.9 204 48.0
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 1.9e-34 150.2 169 47.3
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 3.3e-34 149.4 136 59.6
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.3e-34 149.1 118 64.4
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 7.3e-34 148.3 118 64.4
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.2e-33 147.5 95 76.8
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 3.1e-32 142.9 101 69.3
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 8.9e-32 141.4 118 61.0
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 2.2e-30 136.7 250 37.2
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 4.2e-29 132.5 122 59.0
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 1.5e-26 124.0 252 32.1
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 1.9e-26 123.6 171 43.3
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 5.6e-26 122.1 246 33.7
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 9.6e-26 121.3 163 46.6
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 1.3e-25 120.9 163 46.6
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 8.1e-25 118.2 87 64.4
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 4.0e-24 115.9 90 66.7
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 1.3e-22 110.9 169 44.4
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.7e-22 110.5 136 49.3
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.9e-22 109.8 103 58.3
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 6.4e-22 108.6 142 47.9
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 9.3e-21 104.8 159 41.5
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 7.8e-20 101.7 219 32.4
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 2.3e-19 100.1 258 30.2
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 3.0e-19 99.8 63 79.4
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 5.1e-19 99.0 144 43.8
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.5e-18 97.4 144 45.1
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 2.8e-17 93.2 62 77.4
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 6.9e-16 88.6 170 37.6
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.2e-15 87.8 66 63.6
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 3.4e-15 86.3 173 37.0
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 5.8e-15 85.5 161 36.6
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 1.1e-13 81.3 128 42.2
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 1.6e-12 77.4 53 69.8
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 2.7e-12 76.6 62 69.4
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 4.6e-12 75.9 222 30.2
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.0e-11 74.7 98 45.9
QL06p015203 Quercus lobata HOM05D005370 ORTHO05D006659 2.0e-07 60.5 34 82.4
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 2.0e-07 60.5 56 48.2


User provided reference genes

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