Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0389571 Rosa chinensis HOM05D004338 ORTHO05D005205 2.1e-177 625.5 313 100.0
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 3.1e-128 462.2 272 88.2
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 1.2e-124 450.3 272 86.4
FAN12G0347 Fragaria x ananassa HOM05D004338 ORTHO05D005205 1.2e-119 433.7 284 80.3
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 5.9e-119 431.4 272 82.0
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 9.4e-117 424.1 269 81.0
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 2.7e-103 379.4 294 67.7
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 2.0e-98 363.2 272 68.0
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 1.4e-96 357.1 294 64.3
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 5.9e-95 351.7 273 66.7
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 2.0e-90 336.7 288 63.2
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 5.7e-90 335.1 272 62.9
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 5.7e-90 335.1 272 63.2
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 5.7e-90 335.1 272 64.0
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 1.3e-89 334.0 272 63.6
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 2.3e-86 323.2 276 60.1
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 1.9e-85 320.1 272 61.8
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 1.9e-85 320.1 272 59.2
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 2.5e-85 319.7 272 62.1
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 3.6e-84 315.8 229 69.4
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 4.0e-83 312.4 273 60.8
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 8.9e-83 311.2 226 69.5
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 1.5e-82 310.5 272 61.0
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 1.5e-82 310.5 292 57.5
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 2.6e-82 309.7 272 60.7
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 7.5e-82 308.1 272 60.7
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 7.5e-82 308.1 272 58.8
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 1.3e-81 307.4 224 69.6
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 1.3e-81 307.4 229 67.2
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 2.2e-81 306.6 288 58.0
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 3.7e-81 305.8 234 65.8
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 4.9e-81 305.4 251 61.8
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 6.4e-81 305.1 280 59.3
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 1.1e-80 304.3 275 61.1
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 1.9e-80 303.5 272 61.0
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 3.2e-80 302.8 267 60.7
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 3.2e-80 302.8 218 69.3
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 7.0e-80 301.6 299 55.9
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 1.2e-79 300.8 273 59.3
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 1.6e-79 300.4 280 58.6
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 2.0e-79 300.1 273 59.0
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 2.7e-79 299.7 280 58.6
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 3.5e-79 299.3 275 60.0
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 3.5e-79 299.3 284 55.3
CARHR179740 Cardamine hirsuta HOM05D004338 ORTHO05D005205 7.8e-79 298.1 294 56.5
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 7.8e-79 298.1 228 66.2
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 1.3e-78 297.4 228 66.7
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 2.3e-78 296.6 275 61.5
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 5.0e-78 295.4 266 59.4
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 5.0e-78 295.4 241 62.2
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 8.6e-78 294.7 247 59.9
Solyc09g083260.4 Solanum lycopersicum HOM05D004338 ORTHO05D005205 8.6e-78 294.7 291 55.7
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 8.6e-78 294.7 291 56.0
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 1.1e-77 294.3 264 56.8
MD11G1069300 Malus domestica HOM05D004338 ORTHO05D005205 1.1e-77 294.3 294 55.1
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 1.1e-77 294.3 271 53.5
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 1.5e-77 293.9 289 55.0
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 1.9e-77 293.5 271 56.8
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 1.9e-77 293.5 272 56.6
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 3.3e-77 292.7 259 60.2
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.3e-77 292.7 272 56.6
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 4.3e-77 292.4 276 57.2
Aqoxy102s001 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 7.3e-77 291.6 228 63.6
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 7.3e-77 291.6 226 66.4
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 9.5e-77 291.2 289 54.3
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 1.6e-76 290.4 279 56.3
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 3.6e-76 289.3 265 57.0
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 1.4e-75 287.3 274 54.7
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 1.4e-75 287.3 274 54.7
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 6.8e-75 285.0 274 54.7
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 6.8e-75 285.0 228 63.6
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 1.2e-74 284.3 274 55.8
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 1.5e-74 283.9 269 55.8
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 2.0e-74 283.5 274 54.4
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 2.0e-74 283.5 249 56.6
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 2.6e-74 283.1 218 65.1
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 7.5e-74 281.6 218 65.1
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 7.5e-74 281.6 275 53.5
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 9.8e-74 281.2 249 55.8
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 9.8e-74 281.2 249 55.8
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 1.7e-73 280.4 291 55.3
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 2.9e-73 279.6 202 66.8
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 2.9e-73 279.6 229 61.6
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 3.7e-73 279.3 282 56.4
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 3.7e-73 279.3 190 71.6
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 6.4e-73 278.5 242 58.3
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 1.9e-72 276.9 259 55.6
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 1.6e-71 273.9 273 54.2
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 6.0e-71 271.9 273 54.2
AUR62000438 Chenopodium quinoa HOM05D004338 ORTHO05D005205 5.1e-70 268.9 250 55.6
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 1.5e-69 267.3 250 55.6
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 1.5e-69 267.3 234 59.0
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.9e-69 266.9 264 54.5
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 2.5e-69 266.5 170 77.1
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 7.3e-69 265.0 272 55.5
CDE03G0177 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 8.9e-67 258.1 196 62.2
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 1.5e-66 257.3 174 70.7
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 7.5e-66 255.0 293 46.8
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 3.7e-65 252.7 288 47.9
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 4.9e-65 252.3 279 49.1
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 1.1e-64 251.1 290 47.9
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 2.4e-64 250.0 291 46.7
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 2.4e-64 250.0 291 46.7
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 2.4e-64 250.0 266 51.5
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 7.1e-64 248.4 293 46.8
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 4.6e-63 245.7 274 51.5
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 1.7e-62 243.8 189 63.0
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 2.3e-62 243.4 272 49.6
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 3.0e-62 243.0 294 50.7
Sabra08G0122500 Salix brachista HOM05D004338 ORTHO05D005205 8.6e-62 241.5 364 44.2
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 1.5e-61 240.7 274 51.5
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 4.3e-61 239.2 184 62.0
CARHR210350 Cardamine hirsuta HOM05D004338 ORTHO05D005205 9.9e-58 228.0 281 46.3
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 2.1e-52 210.3 137 75.2
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 1.3e-49 201.1 212 54.7
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 1.2e-47 194.5 233 50.6
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 1.1e-45 188.0 117 76.9
Nn1g00039 Nelumbo nucifera HOM05D004338 ORTHO05D005205 1.5e-45 187.6 111 79.3
Nn1g02553 Nelumbo nucifera HOM05D004338 ORTHO05D005205 2.5e-45 186.8 153 64.7
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 7.3e-45 185.3 110 77.3
AagrBONN_evm.TU.Sc2ySwM_117.2360 Anthoceros agrestis HOM05D004338 ORTHO05D005205 3.1e-43 179.9 299 35.5
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 8.4e-41 171.8 174 46.6
MBI04_g44053_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 1.1e-40 171.4 123 69.1
SMO340G0070 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 6.7e-38 162.2 156 46.2
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 3.3e-37 159.8 324 36.4
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 5.6e-37 159.1 150 46.7
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 1.8e-35 154.1 267 40.1
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 9.3e-32 141.7 87 78.2
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 1.6e-31 141.0 162 43.8
SEGI_27587 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 7.9e-31 138.7 112 52.7
CSS0018059 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 6.7e-30 135.6 87 77.0
HPP92_009627 Vanilla planifolia HOM05D004338 ORTHO05D005205 3.7e-28 129.8 86 70.9
Actinidia04492 Actinidia chinensis HOM05D004338 ORTHO05D005205 1.8e-27 127.5 75 80.0
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 9.0e-27 125.2 87 69.0
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 1.3e-25 121.3 246 35.0
CSS0020548 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 2.9e-25 120.2 179 43.0
Nn1g02552 Nelumbo nucifera HOM05D004338 ORTHO05D005205 4.8e-12 76.3 92 44.6
unitig_748.g7312 Utricularia gibba HOM05D004338 ORTHO05D005205 1.1e-11 75.1 50 64.0
AL8G16460 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 9.1e-11 72.0 156 37.2
CBR_g39046 Chara braunii HOM05D002530 ORTHO05D002802 4.7e-07 59.7 143 25.9


User provided reference genes

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