Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0388241 Rosa chinensis HOM05D013926 ORTHO05D020985 4.0e-116 421.4 206 100.0
RcHm_v2.0_Chr7g0195521 Rosa chinensis HOM05D013926 ORTHO05D020985 1.6e-101 372.9 188 96.8
RcHm_v2.0_Chr2g0175631 Rosa chinensis HOM05D013926 ORTHO05D020985 6.2e-101 370.9 188 96.3
RcHm_v2.0_Chr5g0011621 Rosa chinensis HOM05D013926 ORTHO05D020985 1.6e-51 206.8 190 58.4
RcHm_v2.0_Chr7g0185391 Rosa chinensis HOM05D013926 ORTHO05D020985 1.2e-43 180.6 119 73.9
RcHm_v2.0_Chr1g0364171 Rosa chinensis HOM05D000122 ORTHO05D020985 6.6e-26 121.7 119 52.9
RcHm_v2.0_Chr2g0135791 Rosa chinensis HOM05D013926 ORTHO05D020985 2.8e-16 89.7 66 71.2
RcHm_v2.0_Chr4g0414451 Rosa chinensis HOM05D013926 ORTHO05D343283 6.2e-16 88.6 44 86.4
RcHm_v2.0_Chr4g0417091 Rosa chinensis HOM05D013926 ORTHO05D344408 1.8e-15 87.0 176 37.5
RcHm_v2.0_Chr2g0116941 Rosa chinensis HOM05D021305 ORTHO05D010102 3.1e-15 86.3 103 47.6
FAN27G2436 Fragaria x ananassa HOM05D006059 ORTHO05D010613 7.5e-14 81.6 189 33.9
RcHm_v2.0_Chr5g0057351 Rosa chinensis HOM05D006059 ORTHO05D010613 2.2e-13 80.1 151 38.4
FAN25G3455 Fragaria x ananassa HOM05D006059 ORTHO05D207604 2.9e-13 79.7 144 37.5
FAN18G3353 Fragaria x ananassa HOM05D006059 ORTHO05D010613 8.3e-13 78.2 144 37.5
RcHm_v2.0_Chr1g0363721 Rosa chinensis HOM05D018137 ORTHO05D343934 4.1e-12 75.9 173 34.7
FAN12G1423 Fragaria x ananassa HOM05D006059 ORTHO05D010613 5.4e-12 75.5 129 38.8
FvH4_3g36310 Fragaria vesca HOM05D006059 ORTHO05D000610 1.6e-11 73.9 177 32.8
RcHm_v2.0_Chr4g0398671 Rosa chinensis HOM05D000003 ORTHO05D010102 1.6e-11 73.9 46 76.1
FAN06G2872 Fragaria x ananassa HOM05D006059 ORTHO05D010613 3.5e-11 72.8 114 39.5
RcHm_v2.0_Chr5g0068051 Rosa chinensis HOM05D000642 ORTHO05D000483 3.0e-10 69.7 50 68.0
FvH4_6g48101 Fragaria vesca HOM05D006059 ORTHO05D198592 1.5e-09 67.4 111 38.7
RcHm_v2.0_Chr6g0279821 Rosa chinensis HOM05D006059 ORTHO05D010613 1.5e-09 67.4 116 37.1
FvH4_5g36190 Fragaria vesca HOM05D006059 ORTHO05D046011 5.6e-09 65.5 155 34.2
RcHm_v2.0_Chr2g0161601 Rosa chinensis HOM05D006059 ORTHO05D010613 1.2e-08 64.3 122 32.8
FAN02G0158 Fragaria x ananassa HOM05D006059 ORTHO05D207876 2.8e-08 63.2 156 32.7
FAN25G3073 Fragaria x ananassa HOM05D006059 ORTHO05D022634 1.4e-07 60.8 117 33.3
FAN11G1542 Fragaria x ananassa HOM05D006059 ORTHO05D210510 2.3e-07 60.1 118 35.6
FAN19G2339 Fragaria x ananassa HOM05D013926 ORTHO05D208244 2.3e-07 60.1 67 50.7
RcHm_v2.0_Chr3g0468731 Rosa chinensis HOM05D008097 ORTHO05D010102 2.3e-07 60.1 52 59.6
FAN06G4807 Fragaria x ananassa HOM05D008097 ORTHO05D010102 4.0e-07 59.3 50 54.0
FAN16G0265 Fragaria x ananassa HOM05D006059 ORTHO05D010613 4.0e-07 59.3 140 36.4
FAN03G3178 Fragaria x ananassa HOM05D006059 ORTHO05D022634 5.2e-07 58.9 84 41.7
FvH4_6g02080 Fragaria vesca HOM05D006059 ORTHO05D022634 8.9e-07 58.2 84 41.7
FAN02G0790 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.5e-06 57.4 135 37.0
FAN10G3573 Fragaria x ananassa HOM05D006059 ORTHO05D019147 1.5e-06 57.4 133 34.6
FAN13G2239 Fragaria x ananassa HOM05D006059 ORTHO05D010613 1.5e-06 57.4 135 37.0
FvH4_3g21341 Fragaria vesca HOM05D008097 ORTHO05D010102 2.6e-06 56.6 46 60.9
FAN09G3980 Fragaria x ananassa HOM05D006059 ORTHO05D022634 2.6e-06 56.6 84 41.7
FAN16G0608 Fragaria x ananassa HOM05D008097 ORTHO05D010102 2.6e-06 56.6 46 60.9
FAN24G1586 Fragaria x ananassa HOM05D008097 ORTHO05D010102 2.6e-06 56.6 46 60.9
FAN25G3685 Fragaria x ananassa HOM05D008097 ORTHO05D010102 2.6e-06 56.6 46 60.9
FAN25G2016 Fragaria x ananassa HOM05D008097 ORTHO05D010102 3.4e-06 56.2 45 60.0
RcHm_v2.0_Chr7g0239361 Rosa chinensis HOM05D018137 ORTHO05D340413 3.4e-06 56.2 100 39.0
FAN03G2020 Fragaria x ananassa HOM05D008097 ORTHO05D010102 4.4e-06 55.8 46 58.7
FAN03G3436 Fragaria x ananassa HOM05D006059 ORTHO05D010613 4.4e-06 55.8 140 35.0
FvH4_5g18320 Fragaria vesca HOM05D006059 ORTHO05D010613 7.5e-06 55.1 109 39.4
FAN06G3421 Fragaria x ananassa HOM05D006059 ORTHO05D010613 7.5e-06 55.1 109 39.4
FAN14G3910 Fragaria x ananassa HOM05D006059 ORTHO05D010613 7.5e-06 55.1 109 39.4
FAN05G2015 Fragaria x ananassa HOM05D006059 ORTHO05D010613 9.9e-06 54.7 140 34.3
FAN09G3528 Fragaria x ananassa HOM05D006059 ORTHO05D010613 9.9e-06 54.7 112 37.5


User provided reference genes

Program Settings