Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0387871 Rosa chinensis HOM05D015580 ORTHO05D008569 4.4e-250 867.5 431 100.0
RcHm_v2.0_Chr4g0422731 Rosa chinensis HOM05D000012 ORTHO05D008569 9.0e-102 374.8 398 55.5
RcHm_v2.0_Chr4g0405251 Rosa chinensis HOM05D000012 ORTHO05D008569 8.5e-60 235.3 398 42.2
Prupe.1G124900 Prunus persica HOM05D000012 ORTHO05D008569 9.8e-56 221.9 416 38.0
Prupe.1G124400 Prunus persica HOM05D000012 ORTHO05D008569 8.3e-55 218.8 418 38.0
FvH4_4g18590 Fragaria vesca HOM05D000012 ORTHO05D008569 1.0e-49 201.8 441 34.9
Prupe.1G124600 Prunus persica HOM05D000012 ORTHO05D008569 4.9e-47 193.0 459 32.9
MD13G1165300 Malus domestica HOM05D000012 ORTHO05D008569 4.1e-46 189.9 449 31.4
RcHm_v2.0_Chr3g0477161 Rosa chinensis HOM05D000012 ORTHO05D008569 5.4e-46 189.5 392 37.2
RcHm_v2.0_Chr3g0477071 Rosa chinensis HOM05D000012 ORTHO05D008569 1.0e-41 175.3 366 36.3
FAN12G3633 Fragaria x ananassa HOM05D000012 ORTHO05D008569 2.8e-34 150.6 404 32.2
TAR376G0707 Trochodendron aralioides HOM05D000012 ORTHO05D008569 1.1e-25 122.1 429 29.4
Dinv44145 Davidia involucrata HOM05D000012 ORTHO05D008569 2.3e-25 120.9 458 27.9
FAN12G2586 Fragaria x ananassa HOM05D000012 ORTHO05D008569 2.6e-24 117.5 261 31.8
Prupe.1G125000 Prunus persica HOM05D000012 ORTHO05D008569 3.4e-24 117.1 177 38.4
Manes.07G035900 Manihot esculenta HOM05D000012 ORTHO05D008569 1.3e-23 115.2 435 27.8
FvH4_4g29000 Fragaria vesca HOM05D000012 ORTHO05D008569 1.7e-23 114.8 261 31.8
MD13G1165400 Malus domestica HOM05D017018 ORTHO05D008569 6.4e-23 112.8 256 32.8
QL01p033795 Quercus lobata HOM05D000012 ORTHO05D008569 1.1e-22 112.1 430 28.6
RcHm_v2.0_Chr4g0423201 Rosa chinensis HOM05D000012 ORTHO05D008569 1.1e-22 112.1 230 34.3
GSVIVG01033988001 Vitis vinifera HOM05D000012 ORTHO05D008569 4.1e-22 110.2 233 34.3
Dinv01019 Davidia involucrata HOM05D000012 ORTHO05D008569 9.2e-22 109.0 477 27.3
Manes.07G037900 Manihot esculenta HOM05D000012 ORTHO05D008569 1.2e-21 108.6 436 27.1
TAR623G1521 Trochodendron aralioides HOM05D000012 ORTHO05D008569 1.3e-20 105.1 436 26.6
HanXRQChr15g0463631 Helianthus annuus HOM05D000012 ORTHO05D008569 3.9e-20 103.6 268 29.5
HanXRQChr10g0287481 Helianthus annuus HOM05D000012 ORTHO05D008569 1.9e-19 101.3 238 31.1
CSS0017801 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D008569 5.6e-19 99.8 209 38.3
Oeu010145.1 Olea europaea HOM05D000012 ORTHO05D008569 2.8e-18 97.4 421 27.3
QL01p033779 Quercus lobata HOM05D000012 ORTHO05D008569 4.7e-18 96.7 473 27.3
QL12p032123 Quercus lobata HOM05D000012 ORTHO05D008569 1.1e-17 95.5 220 32.3
Oeu012333.1 Olea europaea HOM05D000012 ORTHO05D008569 2.3e-17 94.4 432 26.4
Oeu012327.1 Olea europaea HOM05D000012 ORTHO05D008569 6.8e-17 92.8 439 25.5
QL12p032107 Quercus lobata HOM05D000012 ORTHO05D008569 1.2e-16 92.0 258 29.1
Ciclev10019504m.g Citrus clementina HOM05D000012 ORTHO05D008569 2.6e-16 90.9 254 29.1
Lsat_1_v5_gn_9_38820 Lactuca sativa HOM05D000012 ORTHO05D008569 3.4e-16 90.5 208 30.3
TAR383G0362 Trochodendron aralioides HOM05D000189 ORTHO05D008569 5.8e-16 89.7 145 37.9
QL12p032157 Quercus lobata HOM05D000012 ORTHO05D008569 9.9e-16 89.0 264 29.9
Thecc.05G019700 Theobroma cacao HOM05D000012 ORTHO05D008569 9.9e-16 89.0 217 31.8
Rhsim07G0238800 Rhododendron simsii HOM05D000012 ORTHO05D008569 2.2e-15 87.8 229 29.7
Atru.chr4.1834_Atru.chr4.1836 Acer truncatum HOM05D000012 ORTHO05D008569 2.9e-15 87.4 254 29.5
Ciclev10006436m.g Citrus clementina HOM05D000012 ORTHO05D008569 3.7e-15 87.0 247 26.7
CAN.G186.75 Capsicum annuum HOM05D000012 ORTHO05D008569 4.9e-15 86.7 449 23.8
ECA247G3524 Erigeron canadensis HOM05D000012 ORTHO05D008569 1.9e-14 84.7 250 28.4
ECA247G0675 Erigeron canadensis HOM05D000012 ORTHO05D008569 5.4e-14 83.2 261 26.4
Aqoxy4G02634 Aquilegia oxysepala HOM05D000012 ORTHO05D018267 7.1e-14 82.8 247 27.5
Rhsim07G0238400 Rhododendron simsii HOM05D000012 ORTHO05D008569 9.2e-14 82.4 260 28.1
Duzib128G1657 Durio zibethinus HOM05D000012 ORTHO05D008569 1.2e-13 82.0 347 28.0
TAR623G0683 Trochodendron aralioides HOM05D000012 ORTHO05D003972 1.2e-13 82.0 276 26.8
SGA_v2.0_scaffold50G18558 Striga asiatica HOM05D000012 ORTHO05D008569 2.7e-13 80.9 214 32.2
Aqoxy4G02632 Aquilegia oxysepala HOM05D000012 ORTHO05D003972 4.6e-13 80.1 298 27.9
Lsat_1_v5_gn_8_99941 Lactuca sativa HOM05D000012 ORTHO05D003972 4.6e-13 80.1 262 30.2
Potri.017G145500 Populus trichocarpa HOM05D000012 ORTHO05D008569 6.0e-13 79.7 266 27.1
Oeu012328.1 Olea europaea HOM05D000012 ORTHO05D008569 7.8e-13 79.3 418 25.6
Rhsim07G0238600 Rhododendron simsii HOM05D000012 ORTHO05D008569 1.0e-12 79.0 260 27.7
Atru.chr4.1839 Acer truncatum HOM05D000012 ORTHO05D008569 3.0e-12 77.4 214 30.8
Ciclev10007033m.g Citrus clementina HOM05D000012 ORTHO05D008569 3.9e-12 77.0 242 26.4
MBI14_g09429_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D018416 3.9e-12 77.0 273 29.3
COL.COLO4_27857 Corchorus olitorius HOM05D000012 ORTHO05D003972 5.1e-12 76.6 293 28.3
Migut.D02557 Erythranthe guttata HOM05D000012 ORTHO05D008569 8.6e-12 75.9 425 25.2
Hma1.2p1_1409F.1_g281680 Hydrangea macrophylla HOM05D000012 ORTHO05D003972 8.6e-12 75.9 244 30.3
Ah.07g200570 Amaranthus hybridus HOM05D000012 ORTHO05D018267 1.1e-11 75.5 263 25.9
Oeu012330.2 Olea europaea HOM05D000012 ORTHO05D008569 1.1e-11 75.5 406 25.1
Potri.017G145532 Populus trichocarpa HOM05D000012 ORTHO05D008569 1.1e-11 75.5 233 28.3
VMungo0331G0119 Vigna mungo HOM05D013941 ORTHO05D008569 1.5e-11 75.1 223 31.8
HanXRQChr10g0287451 Helianthus annuus HOM05D030595 ORTHO05D015098 1.9e-11 74.7 177 30.5
Glyma.03G064000 Glycine max HOM05D013941 ORTHO05D008569 2.5e-11 74.3 264 29.2
Lsat_1_v5_gn_9_38780 Lactuca sativa HOM05D000012 ORTHO05D008569 2.5e-11 74.3 215 30.2
QL12p032203 Quercus lobata HOM05D000012 ORTHO05D008569 3.3e-11 73.9 152 34.2
Ciclev10006647m.g Citrus clementina HOM05D000012 ORTHO05D008569 5.6e-11 73.2 250 26.4
Ciclev10006932m.g Citrus clementina HOM05D000012 ORTHO05D008569 5.6e-11 73.2 251 26.3
Aqoxy4G02629 Aquilegia oxysepala HOM05D000012 ORTHO05D018267 7.3e-11 72.8 232 27.2
Lsat_1_v5_gn_2_3761 Lactuca sativa HOM05D000012 ORTHO05D003972 1.6e-10 71.6 272 29.0
SalBow6G3364 Salvia bowleyana HOM05D000012 ORTHO05D008569 2.1e-10 71.2 231 28.1
Atru.chr12.1035 Acer truncatum HOM05D000240 ORTHO05D008569 3.6e-10 70.5 261 29.1
Duzib251G0678 Durio zibethinus HOM05D000012 ORTHO05D003972 3.6e-10 70.5 222 28.8
COL.COLO4_27856 Corchorus olitorius HOM05D000012 ORTHO05D003972 4.7e-10 70.1 304 27.6
Nn8g40963 Nelumbo nucifera HOM05D000012 ORTHO05D003972 4.7e-10 70.1 226 28.3
Manes.07G036633 Manihot esculenta HOM05D000012 ORTHO05D008569 6.2e-10 69.7 140 33.6
Atru.chr3.97 Acer truncatum HOM05D000012 ORTHO05D008569 8.1e-10 69.3 261 28.0
Gorai.008G175900 Gossypium raimondii HOM05D000012 ORTHO05D003972 1.4e-09 68.6 293 27.6
Dinv16266 Davidia involucrata HOM05D000012 ORTHO05D002345 1.8e-09 68.2 265 28.3
Thecc.08G158000 Theobroma cacao HOM05D000012 ORTHO05D016964 1.8e-09 68.2 415 24.8
VMungo0331G1823 Vigna mungo HOM05D000012 ORTHO05D008569 1.8e-09 68.2 252 25.4
Duzib268G0929 Durio zibethinus HOM05D000012 ORTHO05D003972 2.4e-09 67.8 293 24.6
Gohir.D12G163300 Gossypium hirsutum HOM05D000012 ORTHO05D003972 2.4e-09 67.8 269 27.5
Phvul.010G004200 Phaseolus vulgaris HOM05D000012 ORTHO05D008569 3.1e-09 67.4 255 29.4
Aqoxy4G02630 Aquilegia oxysepala HOM05D000012 ORTHO05D018416 4.0e-09 67.0 232 25.9
Lj2A78G30 Lonicera japonica HOM05D000012 ORTHO05D003972 5.2e-09 66.6 263 25.9
PSO210G7174 Papaver somniferum HOM05D015580 ORTHO05D023065 5.2e-09 66.6 249 25.7
VMungo0331G0325 Vigna mungo HOM05D000012 ORTHO05D008569 6.8e-09 66.2 220 27.3
VMungo0331G0772 Vigna mungo HOM05D013941 ORTHO05D008569 6.8e-09 66.2 226 29.6
Aqoxy5G03397 Aquilegia oxysepala HOM05D000012 ORTHO05D002345 8.9e-09 65.9 274 26.6
Gorai.008G176000 Gossypium raimondii HOM05D000012 ORTHO05D003972 8.9e-09 65.9 217 27.6
EL10Ac5g12041 Beta vulgaris HOM05D000012 ORTHO05D018267 1.2e-08 65.5 232 27.6
Nn8g40966 Nelumbo nucifera HOM05D000012 ORTHO05D003972 2.0e-08 64.7 231 28.1
Thecc.02G327700 Theobroma cacao HOM05D000012 ORTHO05D003972 2.0e-08 64.7 264 26.1
Phvul.010G004000 Phaseolus vulgaris HOM05D013941 ORTHO05D008569 2.6e-08 64.3 253 27.7
PSO210G5495 Papaver somniferum HOM05D015580 ORTHO05D023065 3.4e-08 63.9 179 30.2
Phvul.010G004300 Phaseolus vulgaris HOM05D000012 ORTHO05D008569 3.4e-08 63.9 178 30.3
Ciclev10007000m.g Citrus clementina HOM05D000012 ORTHO05D008569 4.4e-08 63.5 332 24.4
MBI14_g22158_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D018416 4.4e-08 63.5 286 26.9
Phvul.010G003800 Phaseolus vulgaris HOM05D013941 ORTHO05D008569 4.4e-08 63.5 257 28.4
Gohir.A12G160000 Gossypium hirsutum HOM05D000012 ORTHO05D003972 5.8e-08 63.2 290 26.6
MD04G1148300 Malus domestica HOM05D000012 ORTHO05D003972 5.8e-08 63.2 305 25.6
COL.COLO4_14703 Corchorus olitorius HOM05D000012 ORTHO05D002345 9.9e-08 62.4 256 28.1
Glyma.18G033900 Glycine max HOM05D000012 ORTHO05D002345 1.3e-07 62.0 247 29.1
PSO210G5992 Papaver somniferum HOM05D015580 ORTHO05D023065 1.3e-07 62.0 172 29.7
Phvul.010G003666 Phaseolus vulgaris HOM05D000012 ORTHO05D008569 1.3e-07 62.0 253 28.5
SalBow6G0877 Salvia bowleyana HOM05D000012 ORTHO05D008569 1.7e-07 61.6 216 27.8
Ciclev10013636m.g Citrus clementina HOM05D000012 ORTHO05D003972 2.2e-07 61.2 255 24.7
Os03g0823500 Oryza sativa ssp. japonica HOM05D000012 ORTHO05D002345 2.9e-07 60.8 251 26.7
CANSAT35G0920 Cannabis sativa HOM05D000012 ORTHO05D002345 3.8e-07 60.5 263 26.6
Solyc10g084940.3 Solanum lycopersicum HOM05D000012 ORTHO05D002345 3.8e-07 60.5 227 26.4
Duzib093G1330 Durio zibethinus HOM05D000012 ORTHO05D002345 4.9e-07 60.1 260 26.9
MBI14_g09426_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D018416 4.9e-07 60.1 196 29.1
MSTRG.5630 Avicennia marina HOM05D000012 ORTHO05D002345 6.4e-07 59.7 249 26.9
Cfa001410 Carpinus fangiana HOM05D000012 ORTHO05D002345 6.4e-07 59.7 255 26.7
Thecc.05G029700 Theobroma cacao HOM05D000012 ORTHO05D002345 6.4e-07 59.7 260 27.7
VMungo0331G0212 Vigna mungo HOM05D000012 ORTHO05D002345 6.4e-07 59.7 204 29.4
Ah.16g102750 Amaranthus hybridus HOM05D000012 ORTHO05D002345 8.4e-07 59.3 198 29.3
Dinv08051 Davidia involucrata HOM05D000012 ORTHO05D008569 8.4e-07 59.3 149 32.9
Duzib106G1271 Durio zibethinus HOM05D000012 ORTHO05D002345 8.4e-07 59.3 272 25.7
MBI14_g09416_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D018416 8.4e-07 59.3 260 26.9
A09p46860 Brassica napus HOM05D000012 ORTHO05D002345 1.1e-06 58.9 254 25.2
BraA09t40154Z Brassica rapa HOM05D000012 ORTHO05D002345 1.1e-06 58.9 254 25.2
Sopen10g034400 Solanum pennellii HOM05D000012 ORTHO05D002345 1.1e-06 58.9 265 24.9
PSO513G0052 Papaver somniferum HOM05D000012 ORTHO05D002345 1.4e-06 58.5 297 25.9
PGSC0003DMG400011083 Solanum tuberosum HOM05D000012 ORTHO05D002345 1.9e-06 58.2 287 24.7
CiPaw.09G200800 Carya illinoinensis HOM05D000012 ORTHO05D002345 2.4e-06 57.8 245 25.3
Haze_20964 Corylus avellana HOM05D000012 ORTHO05D003972 2.4e-06 57.8 423 24.1
MBI14_g40239_MAGBIO Magnolia biondii HOM05D000012 ORTHO05D002345 2.4e-06 57.8 282 27.7
Nitab4.5_0000362g0150 Nicotiana tabacum HOM05D000012 ORTHO05D002345 2.4e-06 57.8 261 28.0
SalBow5G4030 Salvia bowleyana HOM05D000012 ORTHO05D003972 2.4e-06 57.8 272 25.0
EL10Ac2g04639 Beta vulgaris HOM05D000012 ORTHO05D002345 3.2e-06 57.4 190 28.4
CAN.G697.10 Capsicum annuum HOM05D000012 ORTHO05D002345 3.2e-06 57.4 271 25.5
SEGI_36433 Sequoiadendron giganteum HOM05D000012 ORTHO05D000856 3.2e-06 57.4 238 26.5
unitig_749.g14180 Utricularia gibba HOM05D000012 ORTHO05D002345 3.2e-06 57.4 251 26.7
arahy.Tifrunner.gnm1.ann1.AGF01G Arachis hypogaea HOM05D000012 ORTHO05D002345 4.2e-06 57.0 253 24.9
BcaB02g08499 Brassica carinata HOM05D000012 ORTHO05D002345 4.2e-06 57.0 248 24.2
Thhalv10016423m.g Eutrema salsugineum HOM05D000012 ORTHO05D002345 4.2e-06 57.0 256 27.0
Phvul.010G009400 Phaseolus vulgaris HOM05D000012 ORTHO05D002345 4.2e-06 57.0 211 28.4
Sed0021559 Sechium edule HOM05D000012 ORTHO05D002345 4.2e-06 57.0 242 28.1
MSTRG.19054 Avicennia marina HOM05D000012 ORTHO05D002345 5.4e-06 56.6 253 27.3
CSS0031947 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D003972 5.4e-06 56.6 245 24.5
PGR004G2007 Punica granatum HOM05D000012 ORTHO05D002345 5.4e-06 56.6 255 26.7
QL11p005516 Quercus lobata HOM05D000012 ORTHO05D008569 5.4e-06 56.6 111 36.0
CiPaw.09G200900 Carya illinoinensis HOM05D000012 ORTHO05D002345 9.3e-06 55.8 245 24.9
LjContig00258g0027508 Lotus japonicus HOM05D000012 ORTHO05D002345 9.3e-06 55.8 280 27.5
Peaxi162Scf00975g00012 Petunia axillaris HOM05D000012 ORTHO05D002345 9.3e-06 55.8 261 26.4


User provided reference genes

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