Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1434.5 727 100.0
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 0.0e+00 1369.4 727 95.9
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1368.2 727 95.6
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1367.4 727 95.0
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1354.0 734 94.6
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 0.0e+00 1285.0 734 88.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 0.0e+00 1266.5 735 87.1
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 0.0e+00 1245.7 735 85.4
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 0.0e+00 1130.5 730 78.6
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 0.0e+00 1129.0 731 78.4
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 0.0e+00 1122.5 728 79.3
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1106.7 728 77.7
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1105.9 726 77.4
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 0.0e+00 1099.7 707 78.9
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1088.9 732 77.0
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 0.0e+00 1082.0 733 75.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 0.0e+00 1080.5 733 75.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 7.5e-311 1070.1 733 74.8
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.8e-310 1067.8 729 73.7
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 4.9e-310 1067.4 728 74.0
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 4.9e-310 1067.4 731 75.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.1e-309 1066.2 718 75.2
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-308 1062.0 727 74.0
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 3.5e-308 1061.2 722 75.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.3e-307 1058.5 705 76.7
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 3.9e-307 1057.7 727 74.4
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.5e-306 1055.8 707 75.7
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.3e-306 1054.7 731 73.9
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.3e-305 1052.7 735 73.5
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.5e-303 1045.8 728 72.4
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 2.2e-302 1042.0 759 71.1
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.2e-300 1036.2 684 77.8
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.6e-300 1035.8 733 71.8
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.7e-300 1035.0 732 73.1
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.8e-299 1032.3 746 72.0
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.8e-299 1032.3 736 71.9
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.9e-298 1028.9 708 73.2
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 4.3e-298 1027.7 754 70.4
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 3.7e-297 1024.6 732 72.3
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 3.7e-297 1024.6 732 72.7
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 3.7e-297 1024.6 807 66.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 4.8e-297 1024.2 705 74.9
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.1e-296 1023.1 732 72.0
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 3.1e-296 1021.5 732 72.4
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 4.0e-296 1021.1 712 72.5
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 6.9e-296 1020.4 704 73.7
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.5e-295 1019.2 733 72.2
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.6e-295 1018.5 732 71.6
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 4.5e-295 1017.7 732 72.0
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 8.4e-294 1013.4 744 70.6
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.2e-292 1009.6 723 70.0
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 4.6e-292 1007.7 732 71.0
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.0e-291 1006.5 730 72.2
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.8e-291 1005.7 732 71.6
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 6.7e-291 1003.8 720 70.1
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 3.3e-290 1001.5 713 72.4
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.3e-289 999.6 726 70.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.8e-289 998.4 711 70.3
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 5.3e-288 994.2 703 71.4
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 3.4e-287 991.5 722 69.5
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 5.8e-287 990.7 706 72.7
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.0e-286 989.9 705 71.1
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.0e-286 989.9 712 70.2
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-285 986.1 705 71.2
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.4e-285 986.1 703 70.7
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 7.1e-285 983.8 737 67.8
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.6e-284 982.6 716 70.9
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 2.7e-284 981.9 712 71.6
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.0e-283 979.9 732 69.5
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.3e-283 978.8 748 67.2
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.5e-282 976.1 734 67.4
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 5.7e-282 974.2 706 69.4
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.6e-281 972.6 727 67.8
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 2.4e-280 968.8 727 68.4
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.1e-280 968.4 710 69.7
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 7.6e-279 963.8 709 68.5
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 2.9e-278 961.8 728 67.2
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.1e-277 959.9 706 70.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 2.5e-277 958.7 684 70.9
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.6e-276 954.5 656 74.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 2.3e-275 952.2 742 66.3
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.0e-275 951.8 742 66.2
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 3.0e-275 951.8 741 66.3
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 8.8e-275 950.3 742 66.0
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.3e-274 948.3 708 68.5
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 3.3e-274 948.3 709 69.7
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 4.3e-274 948.0 740 66.2
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 7.4e-274 947.2 741 66.7
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.7e-273 946.0 730 66.2
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.4e-272 943.0 668 73.8
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 9.1e-272 940.3 734 65.9
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.3e-270 936.4 732 65.3
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.1e-269 933.3 710 68.0
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 7.2e-269 930.6 746 65.4
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 4.7e-268 927.9 735 65.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.5e-266 922.9 699 66.1
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.6e-266 922.2 705 67.8
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 5.7e-266 921.0 706 66.6
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.7e-265 919.5 699 66.4
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 4.5e-263 911.4 749 64.2
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 3.8e-262 908.3 696 66.8
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.9e-261 906.0 716 65.5
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.1e-260 902.5 732 63.4
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 3.0e-259 898.7 637 73.0
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 4.4e-258 894.8 725 63.6
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 9.7e-258 893.6 724 64.1
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.3e-254 883.2 732 62.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 3.2e-253 878.6 729 64.6
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.7e-252 875.5 719 63.6
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.4e-248 863.2 713 63.5
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.0e-246 857.1 722 63.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.5e-245 853.2 757 61.0
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 9.4e-245 850.5 704 62.6
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.0e-243 845.5 727 61.6
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 4.1e-232 808.5 644 66.6
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 2.9e-230 802.4 581 72.5
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.2e-226 790.4 733 57.3
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.5e-226 790.0 738 59.2
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.4e-226 788.9 619 67.4
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.9e-221 773.1 708 59.6
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.8e-218 761.5 548 72.3
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.1e-216 757.3 648 64.0
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.6e-212 742.3 568 68.3
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.3e-205 718.8 562 67.3
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.7e-199 699.5 571 65.0
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.5e-199 699.1 728 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 9.0e-195 684.5 650 56.5
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.1e-192 677.6 488 70.7
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-187 661.0 699 52.9
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 3.8e-177 625.9 710 48.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.6e-151 540.8 612 52.6
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.2e-143 514.6 333 76.6
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 6.1e-143 512.3 896 38.5
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 5.9e-130 469.2 441 58.5
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.2e-115 418.7 259 79.5
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.0e-111 405.6 258 77.5
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.2e-98 365.2 370 53.5
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.3e-89 334.3 323 57.0
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.9e-80 304.7 496 38.1
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.4e-70 271.9 148 89.9
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 7.1e-67 259.6 544 37.1
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 4.3e-64 250.4 288 49.0
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 1.7e-52 211.8 133 84.2
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.5e-51 206.8 189 58.2
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.6e-42 178.7 323 37.5
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.5e-40 172.2 122 73.0
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 5.7e-40 170.2 303 38.3
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.1e-34 151.8 77 92.2
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 4.7e-34 150.6 191 47.1
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 3.0e-33 147.9 121 61.2
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.1e-32 146.0 121 61.2
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-31 141.0 78 84.6
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-31 141.0 78 84.6
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 7.0e-30 136.7 177 44.1
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 7.7e-29 133.3 323 34.7
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.9e-28 131.3 90 76.7
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 4.5e-21 107.5 121 51.2
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.5e-16 92.4 85 51.8
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 7.0e-14 83.6 58 69.0
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.5e-11 75.1 51 68.6
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 8.0e-10 70.1 37 89.2
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.3e-09 68.6 64 46.9
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 6.3e-07 60.5 284 26.1
FAN13G2494 Fragaria x ananassa HOM05D014123 ORTHO05D022585 2.4e-06 58.5 135 34.1


User provided reference genes

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