Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0387421 Rosa chinensis HOM05D004307 ORTHO05D005068 3.0e-60 235.0 116 100.0
RcHm_v2.0_Chr3g0481191 Rosa chinensis HOM05D004307 ORTHO05D005068 1.5e-51 206.1 108 94.4
FAN14G1649 Fragaria x ananassa HOM05D004307 ORTHO05D005068 9.1e-41 170.2 108 79.6
FAN05G2241 Fragaria x ananassa HOM05D004307 ORTHO05D005068 1.2e-40 169.9 108 78.7
FvH4_6g23260 Fragaria vesca HOM05D004307 ORTHO05D005068 3.4e-40 168.3 108 78.7
FAN02G1024 Fragaria x ananassa HOM05D004307 ORTHO05D005068 2.2e-39 165.6 108 77.8
Prupe.7G067200 Prunus persica HOM05D004307 ORTHO05D005068 6.5e-39 164.1 107 72.9
MD12G1066900 Malus domestica HOM05D004307 ORTHO05D005068 4.2e-38 161.4 107 70.1
MD14G1067400 Malus domestica HOM05D004307 ORTHO05D005068 8.2e-34 147.1 87 77.0
CiPaw.10G031500 Carya illinoinensis HOM05D004307 ORTHO05D005068 5.2e-28 127.9 105 57.1
Dinv18082 Davidia involucrata HOM05D004307 ORTHO05D005068 6.7e-28 127.5 108 57.4
Duzib106G0148 Durio zibethinus HOM05D004307 ORTHO05D005068 8.8e-28 127.1 110 54.5
QL07p021650 Quercus lobata HOM05D004307 ORTHO05D005068 1.5e-27 126.3 108 54.6
Ciclev10004353m.g Citrus clementina HOM05D004307 ORTHO05D005068 2.0e-27 125.9 111 54.1
Sabra06G0038900 Salix brachista HOM05D004307 ORTHO05D005068 3.3e-27 125.2 109 55.0
Potri.006G054800 Populus trichocarpa HOM05D004307 ORTHO05D005068 5.7e-27 124.4 110 56.4
TWI77G0335 Tripterygium wilfordii HOM05D004307 ORTHO05D005068 7.4e-27 124.0 110 56.4
COL.COLO4_28671 Corchorus olitorius HOM05D004307 ORTHO05D005068 2.2e-26 122.5 110 51.8
Thecc.05G161800 Theobroma cacao HOM05D004307 ORTHO05D005068 2.2e-26 122.5 110 50.9
GSVIVG01033325001 Vitis vinifera HOM05D004307 ORTHO05D005068 2.2e-26 122.5 110 54.5
arahy.Tifrunner.gnm1.ann1.6VN1VE Arachis hypogaea HOM05D004307 ORTHO05D005068 3.7e-26 121.7 112 58.0
arahy.Tifrunner.gnm1.ann1.UMBD9R Arachis hypogaea HOM05D004307 ORTHO05D005068 3.7e-26 121.7 112 58.0
Gohir.D09G120900 Gossypium hirsutum HOM05D004307 ORTHO05D005068 3.7e-26 121.7 110 53.6
CANSAT80G0325 Cannabis sativa HOM05D004307 ORTHO05D005068 4.8e-26 121.3 108 56.5
Psat6g126960 Pisum sativum HOM05D004307 ORTHO05D005068 6.3e-26 120.9 95 58.9
TPR.G29928 Trifolium pratense HOM05D004307 ORTHO05D005068 6.3e-26 120.9 96 58.3
TWI74G0086 Tripterygium wilfordii HOM05D004307 ORTHO05D005068 6.3e-26 120.9 110 53.6
Atru.chr1.1037 Acer truncatum HOM05D004307 ORTHO05D005068 8.2e-26 120.6 110 51.8
CSS0038023 Camellia sinensis var. sinensis HOM05D004307 ORTHO05D005068 1.4e-25 119.8 110 55.5
Manes.09G028900 Manihot esculenta HOM05D004307 ORTHO05D005068 3.1e-25 118.6 110 57.3
Gorai.006G138400 Gossypium raimondii HOM05D004307 ORTHO05D005068 4.1e-25 118.2 110 52.7
Hma1.2p1_0247F.1_g101890 Hydrangea macrophylla HOM05D004307 ORTHO05D005068 4.1e-25 118.2 110 54.5
Lj2C379G3 Lonicera japonica HOM05D004307 ORTHO05D005068 5.3e-25 117.9 111 53.2
Cfa016853 Carpinus fangiana HOM05D004307 ORTHO05D005068 9.1e-25 117.1 105 53.3
Lj5g0012411 Lotus japonicus HOM05D004307 ORTHO05D005068 9.1e-25 117.1 104 54.8
Gohir.A09G124100 Gossypium hirsutum HOM05D004307 ORTHO05D005068 2.0e-24 115.9 110 51.8
Glyma.02G181500 Glycine max HOM05D004307 ORTHO05D005068 1.0e-23 113.6 104 54.8
Haze_19902 Corylus avellana HOM05D004307 ORTHO05D005068 2.2e-23 112.5 105 51.4
Actinidia38565 Actinidia chinensis HOM05D004307 ORTHO05D005068 2.9e-23 112.1 110 50.0
Eucgr.A02396 Eucalyptus grandis HOM05D004307 ORTHO05D005068 3.8e-23 111.7 106 51.9
Ca_26681_v3 Cicer arietinum L. HOM05D004307 ORTHO05D005068 6.5e-23 110.9 106 53.8
Medtr1g052730 Medicago truncatula HOM05D004307 ORTHO05D005068 8.5e-23 110.5 96 55.2
Phvul.007G255200 Phaseolus vulgaris HOM05D004307 ORTHO05D005068 1.9e-22 109.4 104 51.9
MELO3C009666.2 Cucumis melo HOM05D004307 ORTHO05D005068 9.4e-22 107.1 105 49.5
Peaxi162Scf00650g00226 Petunia axillaris HOM05D004307 ORTHO05D005068 9.4e-22 107.1 134 44.0
Rhsim04G0099800 Rhododendron simsii HOM05D004307 ORTHO05D005068 9.4e-22 107.1 109 46.8
ClCG10G017170 Citrullus lanatus HOM05D004307 ORTHO05D005068 1.2e-21 106.7 105 49.5
MBI04_g28751_MAGBIO Magnolia biondii HOM05D004307 ORTHO05D005068 1.6e-21 106.3 107 49.5
vmacro09093 Vaccinium macrocarpon HOM05D004307 ORTHO05D005068 2.1e-21 105.9 110 47.3
AUR62024400 Chenopodium quinoa HOM05D004307 ORTHO05D005068 2.7e-21 105.5 107 45.8
VMungo0720G0406 Vigna mungo HOM05D004307 ORTHO05D005068 2.7e-21 105.5 104 51.0
CsaV3_3G039220 Cucumis sativus L. HOM05D004307 ORTHO05D005068 3.6e-21 105.1 105 48.6
Solyc03g063750.3 Solanum lycopersicum HOM05D004307 ORTHO05D005068 4.7e-21 104.8 93 51.6
Lsat_1_v5_gn_9_27501 Lactuca sativa HOM05D004307 ORTHO05D005068 6.1e-21 104.4 106 49.1
CAN.G77.1 Capsicum annuum HOM05D004307 ORTHO05D005068 8.0e-21 104.0 128 47.7
Lalb_Chr02g0156371 Lupinus albus HOM05D004307 ORTHO05D005068 8.0e-21 104.0 103 51.5
SalBow6G2199 Salvia bowleyana HOM05D004307 ORTHO05D005068 8.0e-21 104.0 120 47.5
Sopen03g017080 Solanum pennellii HOM05D004307 ORTHO05D005068 8.0e-21 104.0 93 50.5
Sed0010803 Sechium edule HOM05D004307 ORTHO05D005068 1.0e-20 103.6 106 50.9
Sc19g0006690 Simmondsia chinensis HOM05D004307 ORTHO05D005068 1.4e-20 103.2 112 46.4
MSTRG.6447 Avicennia marina HOM05D004307 ORTHO05D005068 1.8e-20 102.8 120 48.3
Nitab4.5_0004660g0040 Nicotiana tabacum HOM05D004307 ORTHO05D005068 1.8e-20 102.8 135 41.5
PGSC0003DMG400019789 Solanum tuberosum HOM05D004307 ORTHO05D005068 4.0e-20 101.7 109 47.7
Hund24740 Selenicereus undatus HOM05D004307 ORTHO05D005068 5.2e-20 101.3 98 50.0
DCAR_013583 Daucus carota HOM05D004307 ORTHO05D005068 2.0e-19 99.4 109 49.5
PSO541G4071 Papaver somniferum HOM05D004307 ORTHO05D005068 2.0e-19 99.4 107 51.4
Migut.O00832 Erythranthe guttata HOM05D004307 ORTHO05D005068 2.6e-19 99.0 119 44.5
Oeu008132.1 Olea europaea HOM05D004307 ORTHO05D005068 4.4e-19 98.2 107 47.7
Nitab4.5_0002220g0030 Nicotiana tabacum HOM05D004307 ORTHO05D005068 5.7e-19 97.8 135 43.0
EL10Ac3g07020 Beta vulgaris HOM05D004307 ORTHO05D005068 9.7e-19 97.1 113 48.7
Oeu033778.1 Olea europaea HOM05D004307 ORTHO05D005068 9.7e-19 97.1 132 43.2
PSO675G4641 Papaver somniferum HOM05D004307 ORTHO05D005068 1.7e-18 96.3 107 50.5
BcaC07g40358 Brassica carinata HOM05D004307 ORTHO05D005068 2.2e-18 95.9 109 45.9
ECA247G2115 Erigeron canadensis HOM05D003478 ORTHO05D005068 2.8e-18 95.5 111 44.1
Aqoxy1G00236 Aquilegia oxysepala HOM05D004307 ORTHO05D005068 4.8e-18 94.7 110 49.1
SGA_v2.0_scaffold105G30444 Striga asiatica HOM05D004307 ORTHO05D005068 1.1e-17 93.6 110 44.5
PGR004G0326 Punica granatum HOM05D004307 ORTHO05D005068 1.4e-17 93.2 108 43.5
C08p33190 Brassica napus HOM05D004307 ORTHO05D005068 2.4e-17 92.4 109 43.1
BolC8t50921H Brassica oleracea HOM05D004307 ORTHO05D005068 2.4e-17 92.4 109 43.1
Lalb_Chr05g0213601 Lupinus albus HOM05D004307 ORTHO05D005068 3.1e-17 92.0 96 42.7
HanXRQChr15g0491231 Helianthus annuus HOM05D004307 ORTHO05D005068 9.1e-17 90.5 106 45.3
Hund24733 Selenicereus undatus HOM05D004307 ORTHO05D005068 1.2e-16 90.1 83 57.8
A09p50490 Brassica napus HOM05D004307 ORTHO05D005068 2.7e-16 89.0 109 43.1
BraA09t40500Z Brassica rapa HOM05D004307 ORTHO05D005068 2.7e-16 89.0 109 42.2
Nn2g15471 Nelumbo nucifera HOM05D004307 ORTHO05D005068 7.7e-16 87.4 69 56.5
Sp5g04990 Schrenkiella parvula HOM05D004307 ORTHO05D005068 7.7e-16 87.4 97 45.4
AT3G57630 Arabidopsis thaliana HOM05D004307 ORTHO05D005068 1.0e-15 87.0 109 44.0
Ca_26680_v3 Cicer arietinum L. HOM05D004307 ORTHO05D005068 1.3e-15 86.7 87 48.3
AL5G39210 Arabidopsis lyrata HOM05D004307 ORTHO05D005068 2.5e-14 82.4 109 42.2
HPP92_020394 Vanilla planifolia HOM05D004307 ORTHO05D005068 4.2e-14 81.6 110 41.8
Carub.0005s2447 Capsella rubella HOM05D004307 ORTHO05D005068 2.7e-13 79.0 109 42.2
Thhalv10005794m.g Eutrema salsugineum HOM05D004307 ORTHO05D005068 2.7e-13 79.0 109 41.3
Aa31LG10G12420 Aethionema arabicum HOM05D004307 ORTHO05D005068 3.6e-13 78.6 107 41.1
CARHR167930 Cardamine hirsuta HOM05D004307 ORTHO05D005068 4.7e-13 78.2 109 43.1
Ah.04g151900 Amaranthus hybridus HOM05D004307 ORTHO05D005068 6.1e-13 77.8 106 41.5
CDE05G2581 Ceratophyllum demersum HOM05D004307 ORTHO05D005068 1.2e-11 73.6 110 38.2
Cc06_g16610 Coffea canephora HOM05D004307 ORTHO05D005068 7.5e-11 70.9 104 37.5
Zm00001eb402060 Zea mays HOM05D004307 ORTHO05D005068 7.5e-11 70.9 108 38.0
Glyma.03G139300 Glycine max HOM05D004307 ORTHO05D005068 4.8e-10 68.2 111 41.4
THA.LOC104802308 Tarenaya hassleriana HOM05D004307 ORTHO05D005068 4.8e-10 68.2 73 42.5
ATR0605G138 Amborella trichopoda HOM05D004307 ORTHO05D005068 1.6e-08 63.2 104 39.4
SEGI_17027 Sequoiadendron giganteum HOM05D004307 ORTHO05D005068 8.6e-07 57.4 102 34.3
SHI29204 Sapria himalayana HOM05D004307 ORTHO05D005068 5.5e-06 54.7 104 30.8
RcHm_v2.0_Chr4g0392011 Rosa chinensis HOM05D004307 ORTHO05D344463 9.5e-06 53.9 31 96.8


User provided reference genes

Program Settings