Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0387171 Rosa chinensis HOM05D000001 ORTHO05D345614 5.1e-44 180.6 88 100.0
Cfa008462 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.7e-11 70.1 50 64.0
CiPaw.01G197600 Carya illinoinensis HOM05D000001 ORTHO05D000003 3.7e-10 68.2 41 73.2
RcHm_v2.0_Chr2g0124781 Rosa chinensis HOM05D000001 ORTHO05D000003 4.8e-10 67.8 41 75.6
RcHm_v2.0_Chr4g0387441 Rosa chinensis HOM05D000001 ORTHO05D011532 4.8e-10 67.8 70 52.9
RcHm_v2.0_Chr4g0386861 Rosa chinensis HOM05D000001 ORTHO05D011532 1.1e-09 66.6 41 75.6
RcHm_v2.0_Chr4g0386991 Rosa chinensis HOM05D000001 ORTHO05D011532 2.4e-09 65.5 40 75.0
QL06p001562 Quercus lobata HOM05D000001 ORTHO05D000003 3.1e-09 65.1 41 70.7
FvH4_4g12100 Fragaria vesca HOM05D000001 ORTHO05D000003 1.2e-08 63.2 41 70.7
FAN12G0324 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-08 63.2 41 70.7
FAN12G1636 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-08 63.2 41 70.7
Glyma.11G007200 Glycine max HOM05D000001 ORTHO05D000003 2.6e-08 62.0 41 63.4
TPR.G37999 Trifolium pratense HOM05D000001 ORTHO05D000003 2.6e-08 62.0 45 60.0
Lalb_Chr16g0376441 Lupinus albus HOM05D000001 ORTHO05D000003 4.5e-08 61.2 41 63.4
arahy.Tifrunner.gnm1.ann1.U9TVSZ Arachis hypogaea HOM05D000001 ORTHO05D000003 5.9e-08 60.8 72 43.1
Migut.F01598 Erythranthe guttata HOM05D000001 ORTHO05D009373 5.9e-08 60.8 47 59.6
FAN22G0774 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.7e-08 60.5 41 65.9
RcHm_v2.0_Chr1g0329101 Rosa chinensis HOM05D000001 ORTHO05D011532 7.7e-08 60.5 41 68.3
RcHm_v2.0_Chr4g0387341 Rosa chinensis HOM05D000001 ORTHO05D011532 7.7e-08 60.5 41 68.3
CARHR098570 Cardamine hirsuta HOM05D000001 ORTHO05D000003 1.3e-07 59.7 39 61.5
Potri.010G083700 Populus trichocarpa HOM05D000001 ORTHO05D000003 1.3e-07 59.7 43 58.1
Ciclev10033899m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.7e-07 59.3 43 62.8
LjContig00408g0004438 Lotus japonicus HOM05D000001 ORTHO05D000003 1.7e-07 59.3 41 65.9
GSVIVG01018018001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.7e-07 59.3 41 63.4
Dinv14025 Davidia involucrata HOM05D000001 ORTHO05D000003 2.2e-07 58.9 41 63.4
RcHm_v2.0_Chr4g0386671 Rosa chinensis HOM05D000001 ORTHO05D011532 2.2e-07 58.9 41 68.3
SMO115G0360 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 2.2e-07 58.9 72 41.7
SMO166G0072 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 2.2e-07 58.9 72 41.7
Sabra10G0059300 Salix brachista HOM05D000001 ORTHO05D000003 2.9e-07 58.5 43 58.1
Ca_09034_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009373 3.8e-07 58.2 47 55.3
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 5.0e-07 57.8 47 57.4
Migut.B00430 Erythranthe guttata HOM05D000001 ORTHO05D009373 5.0e-07 57.8 47 57.4
Prupe.1G018800 Prunus persica HOM05D000001 ORTHO05D000003 5.0e-07 57.8 41 65.9
RcHm_v2.0_Chr4g0386531 Rosa chinensis HOM05D000001 ORTHO05D347821 5.0e-07 57.8 50 64.0
Phvul.002G043500 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 6.5e-07 57.4 41 58.5
AT3G22690 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 8.5e-07 57.0 39 61.5
CANSAT56G3818 Cannabis sativa HOM05D000001 ORTHO05D000003 8.5e-07 57.0 41 65.9
Carub.0003s2285 Capsella rubella HOM05D000001 ORTHO05D000003 8.5e-07 57.0 39 61.5
TAR383G0139 Trochodendron aralioides HOM05D000001 ORTHO05D000003 8.5e-07 57.0 45 51.1
Atru.chr4.2415 Acer truncatum HOM05D000001 ORTHO05D000003 1.1e-06 56.6 40 62.5
TAR365G0450 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.1e-06 56.6 66 40.9
BraA05t21486Z Brassica rapa HOM05D000001 ORTHO05D000003 1.4e-06 56.2 39 61.5
Lj2P380T23 Lonicera japonica HOM05D000001 ORTHO05D009340 1.4e-06 56.2 64 43.8
Medtr5g006570 Medicago truncatula HOM05D000001 ORTHO05D000003 1.4e-06 56.2 66 40.9
AagrBONN_evm.TU.Sc2ySwM_117.3725 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-06 55.8 76 40.8
AagrBONN_evm.TU.Sc2ySwM_228.1594 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.9e-06 55.8 74 36.5
Aqoxy2G01570 Aquilegia oxysepala HOM05D000001 ORTHO05D018420 1.9e-06 55.8 81 37.0
AUR62003585 Chenopodium quinoa HOM05D000001 ORTHO05D009083 1.9e-06 55.8 39 51.3
AUR62017898 Chenopodium quinoa HOM05D000001 ORTHO05D009083 1.9e-06 55.8 39 51.3
TAR371G0471 Trochodendron aralioides HOM05D000001 ORTHO05D009373 1.9e-06 55.8 39 56.4
TAR371G0567 Trochodendron aralioides HOM05D000001 ORTHO05D009373 1.9e-06 55.8 39 56.4
VMungo1215G1810 Vigna mungo HOM05D000001 ORTHO05D000003 1.9e-06 55.8 41 58.5
Actinidia08478 Actinidia chinensis HOM05D001769 ORTHO05D001695 2.5e-06 55.5 41 61.0
Aa31LG9G17590 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.5e-06 55.5 38 63.2
AagrBONN_evm.TU.Sc2ySwM_117.805 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.5e-06 55.5 82 37.8
BcaNung02715 Brassica carinata HOM05D000001 ORTHO05D000003 2.5e-06 55.5 44 47.7
A05p26010 Brassica napus HOM05D000001 ORTHO05D000003 2.5e-06 55.5 39 59.0
C07p49780 Brassica napus HOM05D000001 ORTHO05D000003 2.5e-06 55.5 44 47.7
BolC7t45480H Brassica oleracea HOM05D000001 ORTHO05D000003 2.5e-06 55.5 44 47.7
AUR62026283 Chenopodium quinoa HOM05D000001 ORTHO05D000003 2.5e-06 55.5 36 63.9
AUR62026475 Chenopodium quinoa HOM05D000001 ORTHO05D000003 2.5e-06 55.5 36 63.9
Ca_24411_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.5e-06 55.5 41 58.5
Ca_30961_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.5e-06 55.5 41 58.5
MELO3C006512.2 Cucumis melo HOM05D000001 ORTHO05D000003 2.5e-06 55.5 41 63.4
Thhalv10020066m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.5e-06 55.5 39 61.5
SEGI_13594 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 2.5e-06 55.5 79 35.4
Actinidia39302 Actinidia chinensis HOM05D000001 ORTHO05D009083 3.2e-06 55.1 38 60.5
AagrBONN_evm.TU.Sc2ySwM_228.329__330 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.2e-06 55.1 72 38.9
BcaB06g26380 Brassica carinata HOM05D000001 ORTHO05D000003 3.2e-06 55.1 39 59.0
Migut.G00366 Erythranthe guttata HOM05D000001 ORTHO05D000003 3.2e-06 55.1 38 60.5
Prupe.8G050400 Prunus persica HOM05D000001 ORTHO05D009373 3.2e-06 55.1 67 44.8
RcHm_v2.0_Chr1g0329141 Rosa chinensis HOM05D000001 ORTHO05D340387 3.2e-06 55.1 36 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5833 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-06 54.7 40 55.0
AagrBONN_evm.TU.Sc2ySwM_344.940 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-06 54.7 71 36.6
AagrBONN_evm.TU.Sc2ySwM_368.1419 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-06 54.7 71 36.6
COL.COLO4_33797 Corchorus olitorius HOM05D000001 ORTHO05D000003 4.2e-06 54.7 39 53.8
Eucgr.A02621 Eucalyptus grandis HOM05D000001 ORTHO05D009373 4.2e-06 54.7 46 47.8
TWI09G0671 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 4.2e-06 54.7 66 42.4
AagrBONN_evm.TU.Sc2ySwM_344.1460 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.5e-06 54.3 82 35.4
AagrBONN_evm.TU.Sc2ySwM_344.1500 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.5e-06 54.3 82 35.4
AagrBONN_evm.TU.Sc2ySwM_344.3926 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.5e-06 54.3 72 41.7
AagrBONN_evm.TU.Sc2ySwM_362.563 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.5e-06 54.3 66 42.4
AL7G35760 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 5.5e-06 54.3 44 50.0
AT4G18520 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 5.5e-06 54.3 44 50.0
MSTRG.23465 Avicennia marina HOM05D000001 ORTHO05D009083 5.5e-06 54.3 65 41.5
BcaC06g30577 Brassica carinata HOM05D000001 ORTHO05D000003 5.5e-06 54.3 44 47.7
A03p51370 Brassica napus HOM05D000001 ORTHO05D000003 5.5e-06 54.3 44 47.7
Carub.0007s2271 Capsella rubella HOM05D000001 ORTHO05D000003 5.5e-06 54.3 44 50.0
CsaV3_6G040910 Cucumis sativus L. HOM05D000001 ORTHO05D009373 5.5e-06 54.3 67 38.8
Eucgr.H00928 Eucalyptus grandis HOM05D000001 ORTHO05D000003 5.5e-06 54.3 45 48.9
MBI06_g09271_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.5e-06 54.3 39 53.8
Sp3g20450 Schrenkiella parvula HOM05D000001 ORTHO05D000003 5.5e-06 54.3 39 61.5
Hund04440 Selenicereus undatus HOM05D000001 ORTHO05D009083 5.5e-06 54.3 39 51.3
Thecc.04G073300 Theobroma cacao HOM05D000001 ORTHO05D010262 5.5e-06 54.3 47 53.2
EL10Ac6g13129 Beta vulgaris HOM05D000001 ORTHO05D000003 7.2e-06 53.9 48 50.0
BcaC05g28027 Brassica carinata HOM05D000001 ORTHO05D000003 7.2e-06 53.9 39 59.0
C05p40430 Brassica napus HOM05D000001 ORTHO05D000003 7.2e-06 53.9 39 59.0
BolC5t32784H Brassica oleracea HOM05D000001 ORTHO05D000003 7.2e-06 53.9 39 59.0
Glyma.03G184300 Glycine max HOM05D000001 ORTHO05D009373 7.2e-06 53.9 47 51.1
Lj6P609T59 Lonicera japonica HOM05D000001 ORTHO05D000003 7.2e-06 53.9 41 61.0
PSO063G7121 Papaver somniferum HOM05D000001 ORTHO05D000003 7.2e-06 53.9 65 41.5
Phvul.009G185632 Phaseolus vulgaris HOM05D000001 ORTHO05D010304 7.2e-06 53.9 73 41.1
Rhsim03G0011000 Rhododendron simsii HOM05D000001 ORTHO05D009373 7.2e-06 53.9 38 55.3
Actinidia01294 Actinidia chinensis HOM05D000001 ORTHO05D000003 9.4e-06 53.5 47 44.7
AagrBONN_evm.TU.Sc2ySwM_228.122 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.4e-06 53.5 82 36.6
AagrBONN_evm.TU.Sc2ySwM_362.1332__1333 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.4e-06 53.5 72 37.5
AagrBONN_evm.TU.Sc2ySwM_369.119 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.4e-06 53.5 66 39.4
CSS0023739 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009083 9.4e-06 53.5 38 57.9
CSS0038084 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009083 9.4e-06 53.5 38 57.9
CARHR225370 Cardamine hirsuta HOM05D000001 ORTHO05D000003 9.4e-06 53.5 65 38.5
Cfa013433 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.4e-06 53.5 70 35.7
CsaV3_2G033610 Cucumis sativus L. HOM05D000001 ORTHO05D000003 9.4e-06 53.5 44 47.7
RcHm_v2.0_Chr4g0387301 Rosa chinensis HOM05D000001 ORTHO05D011532 9.4e-06 53.5 41 63.4
Sc12g0002480 Simmondsia chinensis HOM05D000001 ORTHO05D000003 9.4e-06 53.5 44 47.7


User provided reference genes

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