Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0386691 Rosa chinensis HOM05D001769 ORTHO05D001695 4.4e-39 164.1 79 100.0
RcHm_v2.0_Chr4g0387351 Rosa chinensis HOM05D001769 ORTHO05D001695 9.6e-10 66.6 54 59.3
FAN12G1465 Fragaria x ananassa HOM05D001769 ORTHO05D001695 1.3e-09 66.2 31 93.5
FAN22G1911 Fragaria x ananassa HOM05D001769 ORTHO05D001695 1.3e-09 66.2 31 93.5
RcHm_v2.0_Chr4g0386981 Rosa chinensis HOM05D001769 ORTHO05D001695 1.3e-09 66.2 31 93.5
RcHm_v2.0_Chr4g0386961 Rosa chinensis HOM05D001769 ORTHO05D001695 6.2e-09 63.9 31 90.3
Ciclev10005328m.g Citrus clementina HOM05D001769 ORTHO05D001695 8.1e-09 63.5 31 87.1
FvH4_4g00800 Fragaria vesca HOM05D001769 ORTHO05D001695 1.1e-08 63.2 31 90.3
Eucgr.H03427 Eucalyptus grandis HOM05D001769 ORTHO05D001695 1.4e-08 62.8 36 75.0
PGR004G1463 Punica granatum HOM05D001769 ORTHO05D001695 1.4e-08 62.8 31 87.1
PGR075G0001 Punica granatum HOM05D001769 ORTHO05D001695 1.4e-08 62.8 31 87.1
RcHm_v2.0_Chr7g0204331 Rosa chinensis HOM05D001769 ORTHO05D001695 1.8e-08 62.4 30 90.0
MD00G1181400 Malus domestica HOM05D001769 ORTHO05D001695 3.1e-08 61.6 31 87.1
RcHm_v2.0_Chr4g0386841 Rosa chinensis HOM05D001769 ORTHO05D001695 4.0e-08 61.2 31 87.1
Aa31LG8G9230 Aethionema arabicum HOM05D001769 ORTHO05D001695 5.3e-08 60.8 40 67.5
Cpa.g.sc58.63 Carica papaya HOM05D001769 ORTHO05D001695 5.3e-08 60.8 33 81.8
CiPaw.02G122600 Carya illinoinensis HOM05D001769 ORTHO05D001695 6.9e-08 60.5 71 43.7
ClCG06G006370 Citrullus lanatus HOM05D001769 ORTHO05D001695 6.9e-08 60.5 31 80.6
MELO3C014294.2 Cucumis melo HOM05D001769 ORTHO05D001695 6.9e-08 60.5 31 80.6
CsaV3_2G013530 Cucumis sativus L. HOM05D001769 ORTHO05D001695 6.9e-08 60.5 31 80.6
Sed0018164 Sechium edule HOM05D001769 ORTHO05D001695 6.9e-08 60.5 31 80.6
Atru.chr4.2389 Acer truncatum HOM05D001769 ORTHO05D001695 9.0e-08 60.1 31 80.6
Atru.chr4.2412 Acer truncatum HOM05D001769 ORTHO05D001695 9.0e-08 60.1 31 80.6
Manes.15G031300 Manihot esculenta HOM05D001769 ORTHO05D001695 9.0e-08 60.1 31 83.9
AL3G37050 Arabidopsis lyrata HOM05D001769 ORTHO05D001695 1.5e-07 59.3 32 75.0
AT3G22740 Arabidopsis thaliana HOM05D001769 ORTHO05D001695 1.5e-07 59.3 32 75.0
Potri.008G155900 Populus trichocarpa HOM05D001769 ORTHO05D001695 1.5e-07 59.3 29 86.2
Sabra08G0118700 Salix brachista HOM05D001769 ORTHO05D001695 1.5e-07 59.3 29 86.2
BcaC05g28026 Brassica carinata HOM05D001769 ORTHO05D001695 2.0e-07 58.9 30 83.3
C05p40390 Brassica napus HOM05D001769 ORTHO05D001695 2.0e-07 58.9 30 83.3
BolC5t32780H Brassica oleracea HOM05D001769 ORTHO05D001695 2.0e-07 58.9 30 83.3
CARHR098590 Cardamine hirsuta HOM05D001769 ORTHO05D001695 2.0e-07 58.9 32 75.0
Nn1g02391 Nelumbo nucifera HOM05D001769 ORTHO05D001695 2.0e-07 58.9 30 83.3
Sp3g20460 Schrenkiella parvula HOM05D001769 ORTHO05D001695 2.0e-07 58.9 30 83.3
Aqoxy5G00424 Aquilegia oxysepala HOM05D001769 ORTHO05D001695 2.6e-07 58.5 29 86.2
Cc03_g04100 Coffea canephora HOM05D001769 ORTHO05D001695 2.6e-07 58.5 44 59.1
COL.COLO4_21528 Corchorus olitorius HOM05D001769 ORTHO05D001695 2.6e-07 58.5 31 80.6
THA.LOC104808566 Tarenaya hassleriana HOM05D001769 ORTHO05D001695 2.6e-07 58.5 31 77.4
Sc06g0007430 Simmondsia chinensis HOM05D001769 ORTHO05D001695 3.4e-07 58.2 31 80.6
BcaB06g26382 Brassica carinata HOM05D001769 ORTHO05D001695 4.5e-07 57.8 30 80.0
CSS0050363 Camellia sinensis var. sinensis HOM05D001769 ORTHO05D001695 4.5e-07 57.8 31 80.6
CANSAT78G0673 Cannabis sativa HOM05D001769 ORTHO05D001695 4.5e-07 57.8 29 82.8
Duzib052G0762 Durio zibethinus HOM05D001769 ORTHO05D001695 4.5e-07 57.8 31 77.4
Gohir.D02G040200 Gossypium hirsutum HOM05D001769 ORTHO05D001695 4.5e-07 57.8 31 77.4
Gorai.005G044600 Gossypium raimondii HOM05D001769 ORTHO05D001695 4.5e-07 57.8 31 77.4
Potri.010G083600 Populus trichocarpa HOM05D001769 ORTHO05D001695 4.5e-07 57.8 33 78.8
SalBow2G2364 Salvia bowleyana HOM05D001769 ORTHO05D001695 4.5e-07 57.8 30 80.0
Carub.0003s2287 Capsella rubella HOM05D001769 ORTHO05D001695 5.8e-07 57.4 32 71.9
Nn6g34130 Nelumbo nucifera HOM05D001769 ORTHO05D001695 5.8e-07 57.4 32 75.0
Oeu053314.1 Olea europaea HOM05D001769 ORTHO05D001695 5.8e-07 57.4 31 80.6
Thecc.04G236100 Theobroma cacao HOM05D001769 ORTHO05D001695 5.8e-07 57.4 32 75.0
A05p26000 Brassica napus HOM05D001769 ORTHO05D001695 7.6e-07 57.0 30 80.0
BraA05t21485Z Brassica rapa HOM05D001769 ORTHO05D001695 7.6e-07 57.0 30 80.0
CiPaw.01G197500 Carya illinoinensis HOM05D001769 ORTHO05D001695 7.6e-07 57.0 29 82.8
QL06p001553 Quercus lobata HOM05D001769 ORTHO05D001695 7.6e-07 57.0 31 77.4
Sabra10G0059400 Salix brachista HOM05D001769 ORTHO05D001695 7.6e-07 57.0 30 76.7
Sed0003582 Sechium edule HOM05D001769 ORTHO05D001695 7.6e-07 57.0 31 74.2
GSVIVG01018019001 Vitis vinifera HOM05D001769 ORTHO05D001695 7.6e-07 57.0 45 60.0
Cfa008461 Carpinus fangiana HOM05D001769 ORTHO05D001695 9.9e-07 56.6 31 74.2
Migut.G00367 Erythranthe guttata HOM05D001769 ORTHO05D001695 9.9e-07 56.6 29 82.8
MBI11_g33000_MAGBIO Magnolia biondii HOM05D001769 ORTHO05D001695 9.9e-07 56.6 35 68.6
Gohir.A02G033600 Gossypium hirsutum HOM05D001769 ORTHO05D001695 1.3e-06 56.2 31 74.2
Nitab4.5_0000085g0320 Nicotiana tabacum HOM05D001769 ORTHO05D001695 1.3e-06 56.2 33 75.8
Peaxi162Scf00092g00025 Petunia axillaris HOM05D001769 ORTHO05D001695 1.3e-06 56.2 31 77.4
PGSC0003DMG400019316 Solanum tuberosum HOM05D001769 ORTHO05D001695 1.3e-06 56.2 35 74.3
Atru.chr5.1490 Acer truncatum HOM05D001769 ORTHO05D001695 1.7e-06 55.8 35 68.6
Glyma.20G148900 Glycine max HOM05D001769 ORTHO05D001695 1.7e-06 55.8 32 71.9
Phvul.007G060300 Phaseolus vulgaris HOM05D001769 ORTHO05D001695 1.7e-06 55.8 32 68.8
Rhsim01G0272800 Rhododendron simsii HOM05D001769 ORTHO05D001695 1.7e-06 55.8 35 74.3
Solyc09g065520.4 Solanum lycopersicum HOM05D001769 ORTHO05D001695 1.7e-06 55.8 35 74.3
Sopen09g027280 Solanum pennellii HOM05D001769 ORTHO05D001695 1.7e-06 55.8 35 74.3
VMungo0720G1536 Vigna mungo HOM05D001769 ORTHO05D001695 1.7e-06 55.8 32 68.8
Actinidia08478 Actinidia chinensis HOM05D001769 ORTHO05D001695 2.2e-06 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.EXF4LS Arachis hypogaea HOM05D001769 ORTHO05D001695 2.2e-06 55.5 31 71.0
PSO210G7192 Papaver somniferum HOM05D001769 ORTHO05D001695 2.2e-06 55.5 35 71.4
CANSAT01G0755 Cannabis sativa HOM05D001769 ORTHO05D001695 2.9e-06 55.1 32 68.8
Cfa018598 Carpinus fangiana HOM05D001769 ORTHO05D001695 2.9e-06 55.1 33 69.7
Haze_11212 Corylus avellana HOM05D001769 ORTHO05D001695 2.9e-06 55.1 31 71.0
Dinv44565 Davidia involucrata HOM05D001769 ORTHO05D001695 2.9e-06 55.1 28 82.1
Hma1.2p1_1572F.1_g291510 Hydrangea macrophylla HOM05D001769 ORTHO05D001695 2.9e-06 55.1 31 74.2
TAR633G0813 Trochodendron aralioides HOM05D001769 ORTHO05D001695 2.9e-06 55.1 32 71.9
CAN.G1105.3 Capsicum annuum HOM05D001769 ORTHO05D001695 3.8e-06 54.7 35 71.4
CDE06G0195 Ceratophyllum demersum HOM05D001769 ORTHO05D001695 3.8e-06 54.7 32 68.8
Thhalv10021051m.g Eutrema salsugineum HOM05D001769 ORTHO05D001695 3.8e-06 54.7 30 73.3
Lalb_Chr06g0160701 Lupinus albus HOM05D001769 ORTHO05D001695 3.8e-06 54.7 31 67.7
PSO170G6123 Papaver somniferum HOM05D001769 ORTHO05D001695 3.8e-06 54.7 33 75.8
PSO210G6804 Papaver somniferum HOM05D001769 ORTHO05D001695 3.8e-06 54.7 33 75.8
Pp3c8_6230 Physcomitrium patens HOM05D001769 ORTHO05D001695 3.8e-06 54.7 28 82.1
QL12p020734 Quercus lobata HOM05D001769 ORTHO05D001695 3.8e-06 54.7 35 71.4
RcHm_v2.0_Chr6g0290381 Rosa chinensis HOM05D001769 ORTHO05D001695 3.8e-06 54.7 35 71.4
Hund12094 Selenicereus undatus HOM05D001769 ORTHO05D001695 3.8e-06 54.7 31 74.2
unitig_8.g3258 Utricularia gibba HOM05D001769 ORTHO05D001695 3.8e-06 54.7 30 76.7
ATR0665G350 Amborella trichopoda HOM05D001769 ORTHO05D001695 4.9e-06 54.3 31 74.2
CAN.G1402.5 Capsicum annuum HOM05D001769 ORTHO05D001695 4.9e-06 54.3 31 74.2
CDE07G0935 Ceratophyllum demersum HOM05D001769 ORTHO05D001695 4.9e-06 54.3 30 73.3
Gohir.A08G065100 Gossypium hirsutum HOM05D001769 ORTHO05D001695 4.9e-06 54.3 35 71.4
Gohir.D08G073600 Gossypium hirsutum HOM05D001769 ORTHO05D001695 4.9e-06 54.3 35 71.4
Gorai.004G078000 Gossypium raimondii HOM05D001769 ORTHO05D001695 4.9e-06 54.3 35 71.4
Lj3C730T4 Lonicera japonica HOM05D001769 ORTHO05D001695 4.9e-06 54.3 32 71.9
Nitab4.5_0002406g0040 Nicotiana tabacum HOM05D001769 ORTHO05D001695 4.9e-06 54.3 31 74.2
Nitab4.5_0003407g0030 Nicotiana tabacum HOM05D001769 ORTHO05D001695 4.9e-06 54.3 71 43.7
Peaxi162Scf00230g01011 Petunia axillaris HOM05D001769 ORTHO05D001695 4.9e-06 54.3 35 71.4
Solyc09g082460.3 Solanum lycopersicum HOM05D001769 ORTHO05D001695 4.9e-06 54.3 31 74.2
SGA_v2.0_scaffold191G40482 Striga asiatica HOM05D001769 ORTHO05D001695 4.9e-06 54.3 27 85.2
Aqoxy2G03438 Aquilegia oxysepala HOM05D001769 ORTHO05D001695 6.4e-06 53.9 31 74.2
BcaC06g31106 Brassica carinata HOM05D001769 ORTHO05D001695 6.4e-06 53.9 42 59.5
Hma1.2p1_0061F.1_g033950 Hydrangea macrophylla HOM05D001769 ORTHO05D001695 6.4e-06 53.9 31 71.0
unitig_899.g14871 Utricularia gibba HOM05D001769 ORTHO05D001695 6.4e-06 53.9 30 76.7
MSTRG.21544 Avicennia marina HOM05D001769 ORTHO05D001695 8.4e-06 53.5 38 63.2
FAN15G0114 Fragaria x ananassa HOM05D001769 ORTHO05D001695 8.4e-06 53.5 35 68.6
Manes.05G078500 Manihot esculenta HOM05D001769 ORTHO05D001695 8.4e-06 53.5 34 67.6
Nitab4.5_0000145g0180 Nicotiana tabacum HOM05D001769 ORTHO05D001695 8.4e-06 53.5 30 73.3
Peaxi162Scf00004g02110 Petunia axillaris HOM05D001769 ORTHO05D001695 8.4e-06 53.5 30 73.3
PGSC0003DMG400032243 Solanum tuberosum HOM05D001769 ORTHO05D001695 8.4e-06 53.5 29 79.3
vmacro01381 Vaccinium macrocarpon HOM05D001769 ORTHO05D001695 8.4e-06 53.5 28 78.6


User provided reference genes

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