Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0386471 Rosa chinensis HOM05D001876 ORTHO05D002002 2.1e-52 208.8 107 100.0
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 2.1e-20 102.4 68 83.8
RcHm_v2.0_Chr4g0386941 Rosa chinensis HOM05D001876 ORTHO05D002002 2.8e-20 102.1 71 80.3
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 8.1e-20 100.5 71 74.6
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 8.1e-20 100.5 71 74.6
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 1.8e-19 99.4 71 73.2
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.8e-19 99.4 71 73.2
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.1e-19 98.6 71 74.6
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 1.3e-09 66.6 85 49.4
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 1.3e-09 66.6 86 47.7
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 1.3e-09 66.6 88 46.6
CANSAT11G0621 Cannabis sativa HOM05D001876 ORTHO05D002002 3.8e-09 65.1 79 51.9
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 3.8e-09 65.1 88 47.7
Lalb_Chr18g0050391 Lupinus albus HOM05D001876 ORTHO05D002002 3.8e-09 65.1 76 51.3
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 6.5e-09 64.3 89 49.4
Glyma.08G337200 Glycine max HOM05D001876 ORTHO05D002002 6.5e-09 64.3 86 46.5
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 6.5e-09 64.3 86 46.5
MD03G1039800 Malus domestica HOM05D001876 ORTHO05D002002 6.5e-09 64.3 84 45.2
Medtr3g061160 Medicago truncatula HOM05D001876 ORTHO05D002002 8.4e-09 63.9 81 46.9
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 1.1e-08 63.5 82 47.6
Prupe.6G032100 Prunus persica HOM05D001876 ORTHO05D002002 1.1e-08 63.5 86 46.5
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 1.4e-08 63.2 83 48.2
arahy.Tifrunner.gnm1.ann1.49CTIT Arachis hypogaea HOM05D001876 ORTHO05D002002 5.5e-08 61.2 81 46.9
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 7.1e-08 60.8 78 48.7
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 9.3e-08 60.5 82 46.3
Duzib268G1004 Durio zibethinus HOM05D001876 ORTHO05D002002 9.3e-08 60.5 78 47.4
MD11G1041300 Malus domestica HOM05D001876 ORTHO05D002002 9.3e-08 60.5 69 50.7
VMungo0540G1408 Vigna mungo HOM05D001876 ORTHO05D002002 1.2e-07 60.1 72 52.8
Ca_14851_v3 Cicer arietinum L. HOM05D001876 ORTHO05D002002 1.6e-07 59.7 86 43.0
TAR627G0307 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.6e-07 59.7 82 46.3
Lj6g0010416 Lotus japonicus HOM05D001876 ORTHO05D002002 2.1e-07 59.3 77 48.1
Sc07g0002250 Simmondsia chinensis HOM05D001876 ORTHO05D002002 2.1e-07 59.3 36 75.0
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 2.1e-07 59.3 78 46.2
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 2.7e-07 58.9 78 46.2
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 2.7e-07 58.9 78 46.2
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 4.6e-07 58.2 81 45.7
Cpa.g.sc12.90 Carica papaya HOM05D001876 ORTHO05D002002 4.6e-07 58.2 79 44.3
CsaV3_3G003970 Cucumis sativus L. HOM05D001876 ORTHO05D002002 4.6e-07 58.2 81 43.2
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 4.6e-07 58.2 74 48.6
SGA_v2.0_scaffold42G15938 Striga asiatica HOM05D001876 ORTHO05D002002 4.6e-07 58.2 77 48.1
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 4.6e-07 58.2 82 45.1
MELO3C014084.2 Cucumis melo HOM05D001876 ORTHO05D002002 7.9e-07 57.4 81 43.2
TPR.G17949 Trifolium pratense HOM05D001876 ORTHO05D002002 7.9e-07 57.4 85 45.9
Psat5g163240 Pisum sativum HOM05D001876 ORTHO05D002002 1.0e-06 57.0 85 41.2
Hund01842 Selenicereus undatus HOM05D001876 ORTHO05D002002 1.0e-06 57.0 75 45.3
ClCG10G004140 Citrullus lanatus HOM05D001876 ORTHO05D002002 1.3e-06 56.6 81 45.7
Lalb_Chr20g0115301 Lupinus albus HOM05D001876 ORTHO05D002002 1.3e-06 56.6 86 43.0
SGA_v2.0_scaffold8G04429 Striga asiatica HOM05D001876 ORTHO05D002002 1.3e-06 56.6 76 48.7
Aa31LG10G500 Aethionema arabicum HOM05D001876 ORTHO05D002002 3.9e-06 55.1 82 41.5
CiPaw.12G141800 Carya illinoinensis HOM05D001876 ORTHO05D002002 3.9e-06 55.1 98 41.8
TWI38G1429 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 3.9e-06 55.1 86 44.2
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 5.1e-06 54.7 82 43.9
Sed0022328 Sechium edule HOM05D001876 ORTHO05D002002 5.1e-06 54.7 81 43.2
TWI39G0122 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 6.7e-06 54.3 84 44.0
Sed0017004 Sechium edule HOM05D001876 ORTHO05D002002 8.7e-06 53.9 81 42.0


User provided reference genes

Program Settings