Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0386271 Rosa chinensis HOM05D002926 ORTHO05D003338 2.4e-50 201.8 101 100.0
RcHm_v2.0_Chr4g0386121 Rosa chinensis HOM05D002926 ORTHO05D003338 5.1e-40 167.5 82 100.0
RcHm_v2.0_Chr2g0169981 Rosa chinensis HOM05D002926 ORTHO05D003338 4.5e-28 127.9 190 45.3
FvH4_6g49830 Fragaria vesca HOM05D002926 ORTHO05D003338 8.5e-27 123.6 179 44.1
Prupe.3G276600 Prunus persica HOM05D002926 ORTHO05D003338 1.5e-23 112.8 185 41.6
MD09G1041100 Malus domestica HOM05D002926 ORTHO05D003338 2.5e-23 112.1 184 41.8
MD17G1042400 Malus domestica HOM05D002926 ORTHO05D003338 6.3e-22 107.5 184 40.8
QL02p078989 Quercus lobata HOM05D002926 ORTHO05D003338 5.5e-18 94.4 178 37.1
Atru.chr6.2164 Acer truncatum HOM05D002926 ORTHO05D003338 3.6e-17 91.7 179 38.0
Thhalv10013974m.g Eutrema salsugineum HOM05D002926 ORTHO05D003338 1.4e-16 89.7 172 37.8
CiPaw.03G033100 Carya illinoinensis HOM05D002926 ORTHO05D003338 2.3e-16 89.0 189 36.0
Manes.17G119500 Manihot esculenta HOM05D002926 ORTHO05D003338 2.3e-16 89.0 158 39.2
Medtr4g071610 Medicago truncatula HOM05D002926 ORTHO05D003338 5.1e-16 87.8 181 36.5
Medtr6g008890 Medicago truncatula HOM05D002926 ORTHO05D003338 5.1e-16 87.8 181 36.5
arahy.Tifrunner.gnm1.ann1.D4CTAN Arachis hypogaea HOM05D002926 ORTHO05D003338 6.7e-16 87.4 189 35.4
arahy.Tifrunner.gnm1.ann1.RTIF0H Arachis hypogaea HOM05D002926 ORTHO05D003338 6.7e-16 87.4 189 35.4
CARHR198340 Cardamine hirsuta HOM05D002926 ORTHO05D003338 6.7e-16 87.4 189 36.0
Lj2g0006245 Lotus japonicus HOM05D002926 ORTHO05D003338 1.5e-15 86.3 179 36.3
Lalb_Chr06g0176541 Lupinus albus HOM05D002926 ORTHO05D003338 1.5e-15 86.3 182 35.7
AT5G14970 Arabidopsis thaliana HOM05D002926 ORTHO05D003338 2.6e-15 85.5 154 39.0
Gohir.D12G057600 Gossypium hirsutum HOM05D002926 ORTHO05D003338 2.6e-15 85.5 177 35.6
BcaC03g13440 Brassica carinata HOM05D002926 ORTHO05D003338 3.3e-15 85.1 176 36.4
BraA02t05254Z Brassica rapa HOM05D002926 ORTHO05D003338 4.4e-15 84.7 179 36.3
Cfa007482 Carpinus fangiana HOM05D002926 ORTHO05D003338 4.4e-15 84.7 188 35.6
FAN02G4196 Fragaria x ananassa HOM05D002926 ORTHO05D003338 4.4e-15 84.7 49 83.7
A02p02810 Brassica napus HOM05D002926 ORTHO05D003338 5.7e-15 84.3 180 36.1
FAN05G5471 Fragaria x ananassa HOM05D002926 ORTHO05D003338 5.7e-15 84.3 49 81.6
Sp6g29070 Schrenkiella parvula HOM05D002926 ORTHO05D003338 5.7e-15 84.3 193 35.8
Gohir.A12G057800 Gossypium hirsutum HOM05D002926 ORTHO05D003338 7.4e-15 84.0 178 35.4
Ca_04235_v3 Cicer arietinum L. HOM05D002926 ORTHO05D003338 9.7e-15 83.6 185 35.7
AL6G25770 Arabidopsis lyrata HOM05D002926 ORTHO05D003338 1.3e-14 83.2 177 36.7
Lalb_Chr02g0159861 Lupinus albus HOM05D002926 ORTHO05D003338 1.3e-14 83.2 163 37.4
Haze_14615 Corylus avellana HOM05D002926 ORTHO05D003338 1.7e-14 82.8 188 35.1
Nitab4.5_0004905g0050 Nicotiana tabacum HOM05D002926 ORTHO05D003338 1.7e-14 82.8 72 63.9
Carub.0006s1313 Capsella rubella HOM05D002926 ORTHO05D003338 2.2e-14 82.4 177 37.3
Nitab4.5_0010004g0010 Nicotiana tabacum HOM05D002926 ORTHO05D003338 2.8e-14 82.0 56 71.4
MSTRG.23973 Avicennia marina HOM05D002926 ORTHO05D003338 3.7e-14 81.6 63 66.7
C02p07430 Brassica napus HOM05D002926 ORTHO05D003338 3.7e-14 81.6 177 35.6
BolC2t06674H Brassica oleracea HOM05D002926 ORTHO05D003338 3.7e-14 81.6 177 35.6
Migut.H00177 Erythranthe guttata HOM05D002926 ORTHO05D003338 3.7e-14 81.6 69 60.9
PGSC0003DMG400001298 Solanum tuberosum HOM05D002926 ORTHO05D003338 3.7e-14 81.6 49 79.6
THA.LOC104822376 Tarenaya hassleriana HOM05D002926 ORTHO05D003338 3.7e-14 81.6 195 35.4
CSS0004644 Camellia sinensis var. sinensis HOM05D002926 ORTHO05D003338 4.8e-14 81.3 69 62.3
Oeu018660.1 Olea europaea HOM05D002926 ORTHO05D003338 4.8e-14 81.3 63 65.1
EL10Ac2g04644 Beta vulgaris HOM05D002926 ORTHO05D003338 6.3e-14 80.9 41 90.2
CSS0001603 Camellia sinensis var. sinensis HOM05D002926 ORTHO05D003338 6.3e-14 80.9 57 68.4
TPR.G18996 Trifolium pratense HOM05D002926 ORTHO05D003338 6.3e-14 80.9 157 37.6
MSTRG.3202 Avicennia marina HOM05D002926 ORTHO05D003338 8.2e-14 80.5 63 68.3
Hund13751 Selenicereus undatus HOM05D002926 ORTHO05D003338 8.2e-14 80.5 67 65.7
Ciclev10015676m.g Citrus clementina HOM05D002926 ORTHO05D003338 1.1e-13 80.1 179 34.6
Oeu018661.2 Olea europaea HOM05D002926 ORTHO05D003338 1.1e-13 80.1 65 61.5
Solyc02g087340.3 Solanum lycopersicum HOM05D002926 ORTHO05D003338 1.1e-13 80.1 49 77.6
HanXRQChr17g0547221 Helianthus annuus HOM05D002926 ORTHO05D003338 1.4e-13 79.7 47 74.5
Thecc.04G066000 Theobroma cacao HOM05D002926 ORTHO05D003338 1.4e-13 79.7 188 33.5
Actinidia02727 Actinidia chinensis HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
Glyma.13G068000 Glycine max HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
Glyma.19G016000 Glycine max HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
Peaxi162Scf00129g00735 Petunia axillaris HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
Phvul.004G022600 Phaseolus vulgaris HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
Psat1g078360 Pisum sativum HOM05D002926 ORTHO05D003338 1.8e-13 79.3 186 34.4
Rhsim08G0062800 Rhododendron simsii HOM05D002926 ORTHO05D003338 1.8e-13 79.3 70 62.9
SalBow1G2984 Salvia bowleyana HOM05D002926 ORTHO05D003338 1.8e-13 79.3 41 87.8
Sopen02g032090 Solanum pennellii HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
SGA_v2.0_scaffold205G41732 Striga asiatica HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
TAR622G1071 Trochodendron aralioides HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
GSVIVG01032582001 Vitis vinifera HOM05D002926 ORTHO05D003338 1.8e-13 79.3 37 97.3
CSS0016087 Camellia sinensis var. sinensis HOM05D002926 ORTHO05D003338 2.4e-13 79.0 57 66.7
Actinidia33981 Actinidia chinensis HOM05D002926 ORTHO05D003338 3.1e-13 78.6 37 94.6
Aa31LG11G14530 Aethionema arabicum HOM05D002926 ORTHO05D003338 3.1e-13 78.6 157 36.9
Duzib147G0337 Durio zibethinus HOM05D002926 ORTHO05D003338 3.1e-13 78.6 173 32.9
Cc07_g02760 Coffea canephora HOM05D002926 ORTHO05D003338 5.3e-13 77.8 37 94.6
Lju41C29T0 Lonicera japonica HOM05D002926 ORTHO05D003338 5.3e-13 77.8 37 94.6
AUR62014570 Chenopodium quinoa HOM05D002926 ORTHO05D003338 7.0e-13 77.4 41 87.8
AUR62039392 Chenopodium quinoa HOM05D002926 ORTHO05D003338 7.0e-13 77.4 41 87.8
VMungo0464G0006 Vigna mungo HOM05D002926 ORTHO05D003338 7.0e-13 77.4 36 97.2
Aqoxy3G00870 Aquilegia oxysepala HOM05D002926 ORTHO05D003338 9.1e-13 77.0 37 94.6
Duzib187G0659 Durio zibethinus HOM05D002926 ORTHO05D003338 9.1e-13 77.0 184 33.7
PSO161G0088 Papaver somniferum HOM05D002926 ORTHO05D003338 9.1e-13 77.0 37 94.6
PSO478G1677 Papaver somniferum HOM05D002926 ORTHO05D003338 9.1e-13 77.0 37 94.6
PGR142G4076 Punica granatum HOM05D002926 ORTHO05D003338 9.1e-13 77.0 42 83.3
Gohir.A05G362100 Gossypium hirsutum HOM05D002926 ORTHO05D003338 1.6e-12 76.3 37 94.6
Gohir.D04G052300 Gossypium hirsutum HOM05D002926 ORTHO05D003338 1.6e-12 76.3 37 94.6
Gorai.012G058500 Gossypium raimondii HOM05D002926 ORTHO05D003338 1.6e-12 76.3 37 94.6
Nn3g17044 Nelumbo nucifera HOM05D002926 ORTHO05D003338 2.0e-12 75.9 37 89.2
ATR1101G040 Amborella trichopoda HOM05D002926 ORTHO05D003338 2.6e-12 75.5 67 53.7
MBI15_g18505_MAGBIO Magnolia biondii HOM05D002926 ORTHO05D003338 2.6e-12 75.5 37 91.9
Eucgr.J02163 Eucalyptus grandis HOM05D002926 ORTHO05D003338 3.5e-12 75.1 174 35.1
MELO3C009911.2 Cucumis melo HOM05D002926 ORTHO05D003338 7.7e-12 73.9 37 91.9
Sed0020844 Sechium edule HOM05D002926 ORTHO05D003338 7.7e-12 73.9 37 91.9
unitig_899.g15500 Utricularia gibba HOM05D002926 ORTHO05D003338 7.7e-12 73.9 37 91.9
CsaV3_3G041930 Cucumis sativus L. HOM05D002926 ORTHO05D003338 1.3e-11 73.2 37 89.2
CDE04G1510 Ceratophyllum demersum HOM05D002926 ORTHO05D003338 3.8e-11 71.6 37 89.2
CDE07G1847 Ceratophyllum demersum HOM05D002926 ORTHO05D003338 3.8e-11 71.6 37 89.2
ClCG10G014640 Citrullus lanatus HOM05D002926 ORTHO05D003338 9.4e-10 67.0 32 90.6
HanXRQChr09g0265751 Helianthus annuus HOM05D002926 ORTHO05D003338 6.1e-09 64.3 43 67.4
ECA232G3044 Erigeron canadensis HOM05D002926 ORTHO05D003338 1.8e-08 62.8 73 46.6
TAR376G0989 Trochodendron aralioides HOM05D002926 ORTHO05D003338 2.0e-07 59.3 68 44.1
Hma1.2p1_1518F.1_g288510 Hydrangea macrophylla HOM05D002926 ORTHO05D003338 1.7e-06 56.2 34 70.6
AagrBONN_evm.TU.Sc2ySwM_344.2892 Anthoceros agrestis HOM05D002926 ORTHO05D003338 2.2e-06 55.8 34 67.6
Glyma.10G260200 Glycine max HOM05D002926 ORTHO05D003338 2.8e-06 55.5 48 50.0
SMO119G0192 Selaginella moellendorffii HOM05D002926 ORTHO05D003338 2.8e-06 55.5 34 64.7
vmacro01987 Vaccinium macrocarpon HOM05D002926 ORTHO05D003338 2.8e-06 55.5 34 67.6
AUR62010334 Chenopodium quinoa HOM05D002926 ORTHO05D003338 3.7e-06 55.1 61 41.0
AUR62016886 Chenopodium quinoa HOM05D002926 ORTHO05D003338 3.7e-06 55.1 61 41.0
Oeu011153.1 Olea europaea HOM05D002926 ORTHO05D003338 3.7e-06 55.1 68 41.2
Potri.001G298200 Populus trichocarpa HOM05D002926 ORTHO05D003338 3.7e-06 55.1 72 38.9
EL10Ac9g22250 Beta vulgaris HOM05D002926 ORTHO05D003338 4.8e-06 54.7 48 52.1
CAN.G606.24 Capsicum annuum HOM05D002926 ORTHO05D003338 4.8e-06 54.7 61 42.6
SalBow6G5330 Salvia bowleyana HOM05D002926 ORTHO05D003338 4.8e-06 54.7 74 37.8
ATR0661G530 Amborella trichopoda HOM05D002926 ORTHO05D003338 6.3e-06 54.3 68 39.7
CARHR105400 Cardamine hirsuta HOM05D002926 ORTHO05D003338 6.3e-06 54.3 34 67.6
Cc02_g19480 Coffea canephora HOM05D002926 ORTHO05D003338 6.3e-06 54.3 34 67.6
Sabra16G0187000 Salix brachista HOM05D002926 ORTHO05D003338 6.3e-06 54.3 72 37.5
PGSC0003DMG400025855 Solanum tuberosum HOM05D002926 ORTHO05D003338 6.3e-06 54.3 34 64.7
AL3G46740 Arabidopsis lyrata HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
AT2G14910 Arabidopsis thaliana HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
BcaB07g31798 Brassica carinata HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
BcaC04g23053 Brassica carinata HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
A09p10660 Brassica napus HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
C09p12640 Brassica napus HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
BolC9t54155H Brassica oleracea HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
BraA09t36708Z Brassica rapa HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
ECA234G2648 Erigeron canadensis HOM05D000210 ORTHO05D000247 8.2e-06 53.9 34 67.6
Thhalv10022715m.g Eutrema salsugineum HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
Glyma.20G130900 Glycine max HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
HanXRQChr10g0288691 Helianthus annuus HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
Lj5A216T102 Lonicera japonica HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6
MD05G1093000 Malus domestica HOM05D002926 ORTHO05D003338 8.2e-06 53.9 61 37.7
Mapoly0216s0009 Marchantia polymorpha HOM05D002926 ORTHO05D003338 8.2e-06 53.9 35 65.7
Potri.009G092800 Populus trichocarpa HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 64.7
THA.LOC104819546 Tarenaya hassleriana HOM05D002926 ORTHO05D003338 8.2e-06 53.9 34 67.6


User provided reference genes

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