Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0385941 Rosa chinensis HOM05D007316 ORTHO05D009393 6.8e-30 133.3 64 100.0
RcHm_v2.0_Chr4g0387941 Rosa chinensis HOM05D007316 ORTHO05D009393 3.4e-29 131.0 64 98.4
RcHm_v2.0_Chr4g0387841 Rosa chinensis HOM05D007316 ORTHO05D009393 1.3e-28 129.0 64 96.9
FvH4_4g00490 Fragaria vesca HOM05D007316 ORTHO05D009393 8.3e-28 126.3 64 95.3
FAN12G3999 Fragaria x ananassa HOM05D007316 ORTHO05D009393 8.3e-28 126.3 64 95.3
FAN17G1024 Fragaria x ananassa HOM05D007316 ORTHO05D009393 8.3e-28 126.3 64 95.3
FAN22G1131 Fragaria x ananassa HOM05D007316 ORTHO05D009393 8.3e-28 126.3 64 95.3
Manes.17G057300 Manihot esculenta HOM05D007316 ORTHO05D009393 1.1e-24 115.9 64 82.8
Prupe.3G122600 Prunus persica HOM05D007316 ORTHO05D009393 1.1e-24 115.9 64 82.8
Phvul.001G220400 Phaseolus vulgaris HOM05D007316 ORTHO05D009393 2.5e-24 114.8 64 81.2
Potri.004G058400 Populus trichocarpa HOM05D007316 ORTHO05D009393 5.6e-24 113.6 64 79.7
CANSAT56G2903 Cannabis sativa HOM05D007316 ORTHO05D009393 9.5e-24 112.8 64 81.2
Glyma.19G223500 Glycine max HOM05D007316 ORTHO05D009393 2.1e-23 111.7 64 79.7
Potri.011G067800 Populus trichocarpa HOM05D007316 ORTHO05D009393 2.8e-23 111.3 64 76.6
THA.LOC104813939 Tarenaya hassleriana HOM05D007316 ORTHO05D009393 2.8e-23 111.3 64 76.6
Hma1.2p1_0157F.1_g069460 Hydrangea macrophylla HOM05D007316 ORTHO05D009393 3.6e-23 110.9 64 79.7
GSVIVG01029768001 Vitis vinifera HOM05D007316 ORTHO05D009393 4.7e-23 110.5 64 78.1
QL09p015786 Quercus lobata HOM05D007316 ORTHO05D009393 6.1e-23 110.2 63 76.2
QL09p023249 Quercus lobata HOM05D007316 ORTHO05D009393 6.1e-23 110.2 63 76.2
Ca_09261_v3 Cicer arietinum L. HOM05D007316 ORTHO05D009393 8.0e-23 109.8 64 76.6
Duzib128G0483 Durio zibethinus HOM05D007316 ORTHO05D009393 8.0e-23 109.8 64 76.6
Glyma.03G226500 Glycine max HOM05D007316 ORTHO05D009393 8.0e-23 109.8 64 78.1
Psat3g015560 Pisum sativum HOM05D007316 ORTHO05D009393 8.0e-23 109.8 64 75.0
A07p29930 Brassica napus HOM05D007316 ORTHO05D009393 1.0e-22 109.4 64 73.4
C06p34200 Brassica napus HOM05D007316 ORTHO05D009393 1.0e-22 109.4 64 73.4
BolC6t38541H Brassica oleracea HOM05D007316 ORTHO05D009393 1.0e-22 109.4 64 73.4
BraA07t30632Z Brassica rapa HOM05D007316 ORTHO05D009393 1.0e-22 109.4 64 73.4
QL02p030600 Quercus lobata HOM05D007316 ORTHO05D009393 1.0e-22 109.4 63 76.2
SalBow3G1440 Salvia bowleyana HOM05D007316 ORTHO05D009393 1.0e-22 109.4 64 78.1
arahy.Tifrunner.gnm1.ann1.AE1MMP Arachis hypogaea HOM05D007316 ORTHO05D009393 1.8e-22 108.6 64 76.6
arahy.Tifrunner.gnm1.ann1.CUXT1U Arachis hypogaea HOM05D007316 ORTHO05D009393 1.8e-22 108.6 64 76.6
CSS0014503 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.8e-22 108.6 62 75.8
CSS0021979 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.8e-22 108.6 62 75.8
Medtr7g111090 Medicago truncatula HOM05D007316 ORTHO05D009393 1.8e-22 108.6 64 76.6
Aa31LG4G3460 Aethionema arabicum HOM05D007316 ORTHO05D009393 3.0e-22 107.8 64 73.4
Ciclev10023234m.g Citrus clementina HOM05D007316 ORTHO05D009393 3.0e-22 107.8 64 76.6
Thecc.05G261200 Theobroma cacao HOM05D007316 ORTHO05D009393 3.0e-22 107.8 64 76.6
CSS0015421 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 4.0e-22 107.5 62 75.8
Lj1g0006735 Lotus japonicus HOM05D007316 ORTHO05D009393 4.0e-22 107.5 63 76.2
Duzib106G1284 Durio zibethinus HOM05D007316 ORTHO05D009393 5.2e-22 107.1 64 75.0
Eucgr.H00565 Eucalyptus grandis HOM05D007316 ORTHO05D009393 5.2e-22 107.1 64 71.9
MD09G1239400 Malus domestica HOM05D007316 ORTHO05D009393 6.8e-22 106.7 62 75.8
Sp5g28140 Schrenkiella parvula HOM05D007316 ORTHO05D009393 6.8e-22 106.7 64 70.3
Sed0015703 Sechium edule HOM05D007316 ORTHO05D009393 6.8e-22 106.7 64 76.6
Gohir.D13G105800 Gossypium hirsutum HOM05D007316 ORTHO05D009393 8.9e-22 106.3 64 75.0
ClCG09G016900 Citrullus lanatus HOM05D007316 ORTHO05D009393 1.2e-21 105.9 64 76.6
Cc02_g36870 Coffea canephora HOM05D007316 ORTHO05D009393 1.2e-21 105.9 65 76.9
CsaV3_2G036390 Cucumis sativus L. HOM05D007316 ORTHO05D009393 1.2e-21 105.9 64 76.6
Atru.chr12.1494 Acer truncatum HOM05D007316 ORTHO05D009393 2.0e-21 105.1 64 75.0
Migut.B00683 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.6e-21 104.8 64 73.4
Migut.B00911 Erythranthe guttata HOM05D007316 ORTHO05D009393 2.6e-21 104.8 64 73.4
MELO3C021892.2 Cucumis melo HOM05D007316 ORTHO05D009393 3.4e-21 104.4 64 75.0
Cfa016046 Carpinus fangiana HOM05D007316 ORTHO05D009393 5.7e-21 103.6 64 71.9
Cpa.g.sc233.10 Carica papaya HOM05D007316 ORTHO05D009393 9.8e-21 102.8 65 75.4
TWI23G0494 Tripterygium wilfordii HOM05D007316 ORTHO05D009393 9.8e-21 102.8 64 68.8
AL2G32940 Arabidopsis lyrata HOM05D007316 ORTHO05D009393 2.9e-20 101.3 64 68.8
CSS0022236 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 2.9e-20 101.3 62 72.6
AT1G73177 Arabidopsis thaliana HOM05D007316 ORTHO05D009393 4.9e-20 100.5 64 67.2
Carub.0002s1996 Capsella rubella HOM05D007316 ORTHO05D009393 8.3e-20 99.8 64 67.2
CARHR066170 Cardamine hirsuta HOM05D007316 ORTHO05D009393 8.3e-20 99.8 64 68.8
Peaxi162Scf00071g00128 Petunia axillaris HOM05D007316 ORTHO05D009393 8.3e-20 99.8 61 72.1
BcaC08g45665 Brassica carinata HOM05D007316 ORTHO05D009393 1.8e-19 98.6 79 59.5
PGSC0003DMG400026307 Solanum tuberosum HOM05D007316 ORTHO05D009393 4.1e-19 97.4 62 74.2
PGR119G2118 Punica granatum HOM05D007316 ORTHO05D009393 5.4e-19 97.1 64 68.8
Sopen08g002530 Solanum pennellii HOM05D007316 ORTHO05D009393 5.4e-19 97.1 62 74.2
Lsat_1_v5_gn_9_84180 Lactuca sativa HOM05D007316 ORTHO05D009393 9.2e-19 96.3 60 75.0
COL.COLO4_20544 Corchorus olitorius HOM05D007316 ORTHO05D009393 1.2e-18 95.9 65 67.7
Lalb_Chr04g0260251 Lupinus albus HOM05D007316 ORTHO05D009393 1.6e-18 95.5 62 71.0
HanXRQChr07g0193721 Helianthus annuus HOM05D007316 ORTHO05D009393 2.0e-18 95.1 60 73.3
Aqoxy7G02856 Aquilegia oxysepala HOM05D007316 ORTHO05D009393 3.5e-18 94.4 62 67.7
Thhalv10019421m.g Eutrema salsugineum HOM05D007316 ORTHO05D009393 5.2e-14 80.5 59 61.0
CiPaw.05G216300 Carya illinoinensis HOM05D007316 ORTHO05D009393 1.2e-13 79.3 55 69.1
ECA236G4186 Erigeron canadensis HOM05D007316 ORTHO05D009393 1.2e-13 79.3 61 63.9
TAR362G0014 Trochodendron aralioides HOM05D007316 ORTHO05D009393 1.2e-13 79.3 43 81.4
vmacro19806 Vaccinium macrocarpon HOM05D007316 ORTHO05D009393 9.8e-13 76.3 43 81.4
Os07g0633800 Oryza sativa ssp. japonica HOM05D007316 ORTHO05D009393 1.3e-12 75.9 60 51.7
Oeu034759.1 Olea europaea HOM05D007316 ORTHO05D009393 2.2e-12 75.1 44 75.0
Nn7g37509 Nelumbo nucifera HOM05D007316 ORTHO05D009393 6.4e-12 73.6 42 76.2
CSS0008863 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 8.3e-12 73.2 44 72.7
CSS0044079 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 8.3e-12 73.2 44 72.7
CSS0028514 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-11 72.8 44 70.5
CSS0044918 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-11 72.8 44 70.5
CSS0047183 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.1e-11 72.8 44 70.5
GSVIVG01026029001 Vitis vinifera HOM05D007316 ORTHO05D009393 1.1e-11 72.8 44 70.5
CSS0021742 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 1.4e-11 72.4 43 72.1
CSS0047605 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 7.0e-11 70.1 44 68.2
CSS0025187 Camellia sinensis var. sinensis HOM05D007316 ORTHO05D009393 9.2e-11 69.7 44 65.9
Actinidia11709 Actinidia chinensis HOM05D007316 ORTHO05D009393 7.8e-10 66.6 34 85.3
MBI18_g28941_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D004701 7.8e-10 66.6 43 67.4
Gorai.013G118500 Gossypium raimondii HOM05D007316 ORTHO05D009393 5.0e-09 63.9 64 51.6
Rhsim05G0117300 Rhododendron simsii HOM05D007316 ORTHO05D009393 1.1e-08 62.8 64 53.1
RhsimUnG0015700 Rhododendron simsii HOM05D007316 ORTHO05D009393 1.1e-08 62.8 64 53.1
EL10Ac8g18312 Beta vulgaris HOM05D007316 ORTHO05D009393 1.9e-08 62.0 43 67.4
MCO03G596 Micromonas commoda HOM05D007316 ORTHO05D009393 3.3e-08 61.2 56 46.4
Ah.09g230190 Amaranthus hybridus HOM05D007316 ORTHO05D009393 5.6e-08 60.5 43 62.8
AUR62021328 Chenopodium quinoa HOM05D007316 ORTHO05D009393 5.6e-08 60.5 43 62.8
Gohir.A13G102600 Gossypium hirsutum HOM05D007316 ORTHO05D009393 1.2e-07 59.3 64 48.4
CAN.G530.4 Capsicum annuum HOM05D007316 ORTHO05D009393 1.6e-07 58.9 38 65.8
Solyc08g006570.4 Solanum lycopersicum HOM05D007316 ORTHO05D009393 8.1e-07 56.6 35 68.6
Mapoly0010s0075 Marchantia polymorpha HOM05D007316 ORTHO05D009393 1.8e-06 55.5 56 39.3
HPP92_022152 Vanilla planifolia HOM05D007316 ORTHO05D009393 1.8e-06 55.5 57 45.6
unitig_749.g14119 Utricularia gibba HOM05D007316 ORTHO05D009393 5.2e-06 53.9 75 41.3


User provided reference genes

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