Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.6e-203 712.6 374 100.0
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.6e-174 615.5 378 86.5
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 3.8e-173 611.7 378 86.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 4.2e-172 608.2 336 95.8
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.4e-167 592.4 374 83.4
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 8.8e-162 573.9 419 76.4
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.9e-154 548.5 377 76.9
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.6e-147 525.4 377 73.7
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 8.0e-147 524.2 377 74.0
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 8.0e-147 524.2 377 74.0
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.7e-128 463.4 379 67.8
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.0e-125 454.1 369 66.7
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 2.0e-121 439.9 380 64.5
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.6e-118 428.7 372 60.5
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.8e-118 427.9 372 60.2
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.0e-117 425.2 372 59.7
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-115 420.6 368 61.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 2.3e-114 416.4 383 58.7
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.3e-114 416.4 366 63.4
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.4e-113 412.1 371 63.1
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.9e-111 406.8 378 59.3
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.6e-110 403.7 372 59.9
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.7e-110 402.9 378 59.3
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.6e-110 402.1 367 61.0
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.6e-110 402.1 365 60.8
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-109 400.6 361 59.0
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 6.6e-109 398.3 375 60.3
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 8.6e-109 397.9 361 58.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-107 394.0 361 58.2
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.7e-107 392.1 368 56.8
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 8.1e-107 391.3 380 58.4
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 8.1e-107 391.3 373 59.2
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 8.1e-107 391.3 364 58.2
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.0e-105 386.7 368 57.9
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.6e-105 386.3 365 59.5
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 4.4e-105 385.6 369 56.4
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.2e-104 383.3 384 57.3
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.4e-103 380.6 372 58.3
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.4e-103 379.8 350 58.9
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.2e-103 379.4 368 55.4
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.2e-103 379.4 368 55.7
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 7.1e-103 378.3 321 60.7
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 9.2e-103 377.9 369 55.8
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 4.6e-102 375.6 370 57.3
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.7e-101 373.6 371 57.1
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 8.6e-101 371.3 358 57.8
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 8.6e-101 371.3 373 58.4
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 2.8e-99 366.3 329 60.2
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 6.2e-99 365.2 368 57.1
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.4e-98 363.2 324 62.0
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 5.2e-98 362.1 367 56.7
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 5.2e-98 362.1 354 56.8
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 4.4e-97 359.0 372 55.4
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.1e-95 354.4 365 54.5
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.9e-95 353.6 372 54.8
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 3.2e-95 352.8 372 54.8
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 5.4e-95 352.1 377 53.6
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 7.1e-95 351.7 357 54.1
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 9.2e-95 351.3 357 56.9
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.7e-94 349.7 358 53.4
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 6.0e-94 348.6 368 51.4
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.7e-93 347.1 354 54.0
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 8.7e-93 344.7 385 53.8
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.5e-92 343.2 369 53.4
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 3.3e-92 342.8 380 52.4
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 5.6e-92 342.0 377 51.7
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 7.3e-92 341.7 378 52.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 4.0e-90 335.9 368 50.5
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 5.3e-90 335.5 380 50.5
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 3.4e-89 332.8 366 52.5
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.4e-89 332.4 358 53.4
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 5.8e-89 332.0 340 55.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 5.8e-89 332.0 370 50.5
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 5.8e-89 332.0 370 51.9
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 7.6e-89 331.6 375 51.5
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 9.9e-89 331.3 368 50.5
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-88 330.5 368 51.9
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.9e-88 329.7 374 50.3
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.1e-87 327.8 373 50.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.4e-87 327.4 369 52.3
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.4e-87 327.4 369 50.9
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 9.3e-87 324.7 368 51.9
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.6e-86 323.9 368 51.6
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 3.5e-86 322.8 368 51.6
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 6.0e-86 322.0 346 52.6
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 2.3e-85 320.1 368 51.4
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 2.3e-85 320.1 368 51.4
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 5.1e-85 318.9 328 55.8
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 9.6e-84 314.7 367 50.7
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.3e-83 314.3 361 51.2
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.6e-83 313.9 331 53.5
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.1e-83 313.5 366 50.5
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-82 311.2 379 50.4
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.1e-82 311.2 379 50.4
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.4e-82 310.8 353 51.8
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.8e-82 310.5 312 56.4
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 4.0e-82 309.3 366 50.3
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 4.0e-82 309.3 358 51.1
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 6.9e-82 308.5 367 50.4
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 9.0e-82 308.1 367 50.4
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.2e-81 307.8 369 49.3
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.0e-81 307.0 370 50.8
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 4.5e-81 305.8 367 49.6
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.5e-81 305.8 363 49.6
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 7.6e-81 305.1 367 50.1
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 2.9e-80 303.1 378 50.0
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 6.4e-80 302.0 378 50.0
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 6.4e-80 302.0 378 50.0
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 8.4e-80 301.6 350 50.0
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 4.2e-79 299.3 306 52.9
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 7.1e-79 298.5 373 48.3
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 7.9e-78 295.0 368 49.2
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.1e-76 291.2 381 48.3
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 4.3e-76 289.3 371 44.5
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.3e-75 287.7 367 48.0
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 1.1e-74 284.6 351 47.6
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 3.1e-74 283.1 334 51.2
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 9.9e-73 278.1 356 46.1
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.2e-70 271.2 381 42.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 2.1e-70 270.4 287 51.9
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.5e-70 269.6 356 43.5
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.0e-69 266.5 331 49.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.3e-68 262.7 353 46.2
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.8e-66 257.3 347 45.0
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 5.5e-63 245.7 352 42.0
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.2e-62 244.6 281 45.9
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.1e-52 211.5 373 38.3
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 3.7e-51 206.5 195 57.4
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.8e-51 206.1 286 43.7
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.1e-50 204.9 332 42.2
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.6e-36 157.1 136 64.0
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.1e-34 151.8 131 64.1
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.1e-30 136.0 157 45.9
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.2e-29 132.9 139 46.8
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 6.3e-27 125.9 388 31.7
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.8e-26 124.4 157 45.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.1e-26 123.6 131 48.1
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.3e-26 122.9 262 34.7
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.1e-26 122.1 126 48.4
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.7e-24 117.9 199 40.2
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 4.2e-23 113.2 102 54.9
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 5.5e-23 112.8 395 28.9
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.6e-22 110.2 366 26.8
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 6.8e-21 105.9 378 28.0
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.4e-20 103.6 383 26.1
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 4.8e-19 99.8 245 29.8
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 7.2e-15 85.9 139 33.8
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 2.0e-12 77.8 64 59.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 2.6e-12 77.4 82 43.9
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 2.2e-11 74.3 98 44.9
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.3e-08 65.1 95 46.3
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.3e-08 65.1 95 46.3
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 1.9e-07 61.2 65 50.8
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 2.5e-07 60.8 65 50.8
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 4.3e-07 60.1 70 44.3
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 2.1e-06 57.8 104 39.4
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 2.8e-06 57.4 55 52.7
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 8.0e-06 55.8 55 49.1


User provided reference genes

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