Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 4.9e-219 764.2 403 100.0
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.2e-172 610.1 336 95.8
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 8.0e-153 544.3 340 85.3
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 4.0e-152 542.0 340 85.0
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.3e-146 522.3 336 82.1
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 8.3e-142 507.7 381 74.8
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.5e-135 486.9 339 75.5
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.6e-132 476.9 339 74.6
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.6e-132 476.9 339 74.6
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 6.6e-131 471.5 339 73.5
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 2.9e-118 429.5 341 68.3
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 2.5e-114 416.4 340 66.2
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.9e-110 402.1 341 60.7
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.2e-109 399.4 341 60.1
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.6e-108 397.1 373 60.1
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.7e-108 396.4 339 60.2
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.3e-105 387.5 343 62.1
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.3e-105 387.5 339 63.4
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 2.1e-105 386.7 339 60.2
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.8e-104 383.6 339 59.3
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 6.9e-104 381.7 392 57.9
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.2e-103 380.9 347 60.8
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.5e-103 380.6 339 61.7
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.2e-101 372.9 378 55.8
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 4.2e-101 372.5 366 57.9
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 7.1e-101 371.7 348 58.6
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.7e-100 369.8 338 58.0
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.8e-99 367.1 338 57.4
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.3e-99 366.7 338 56.8
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 6.7e-99 365.2 321 59.5
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.7e-99 365.2 338 57.4
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 8.7e-99 364.8 329 59.9
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.1e-98 364.4 340 58.5
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 3.3e-98 362.8 344 57.8
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.3e-98 362.8 351 58.4
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.6e-97 360.5 342 58.5
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.4e-96 356.7 324 61.1
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.1e-96 356.3 337 57.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.1e-96 356.3 339 55.5
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.0e-96 355.9 339 55.8
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 5.3e-96 355.5 336 56.5
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 5.3e-96 355.5 347 56.2
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.4e-95 352.8 349 57.6
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 3.4e-95 352.8 341 56.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.3e-94 350.9 349 56.4
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 2.2e-94 350.1 369 55.6
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 4.9e-94 349.0 331 57.7
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 6.5e-94 348.6 342 57.6
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 3.2e-93 346.3 368 54.9
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.2e-93 345.9 343 56.9
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 2.7e-92 343.2 335 56.7
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.7e-92 343.2 335 57.0
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 4.6e-92 342.4 342 57.9
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.8e-91 340.5 336 57.4
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.5e-90 336.7 349 56.4
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 2.8e-89 333.2 338 53.8
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.7e-89 332.8 339 54.9
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 4.8e-89 332.4 339 55.8
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 8.2e-89 331.6 372 51.6
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.4e-88 330.9 342 54.1
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 3.1e-88 329.7 347 53.9
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 4.1e-88 329.3 367 52.3
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 2.6e-87 326.6 342 54.4
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 2.6e-87 326.6 380 53.2
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 3.4e-87 326.2 342 54.1
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 3.4e-87 326.2 368 51.1
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.0e-86 324.7 339 51.3
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.0e-86 324.7 342 52.9
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.9e-85 320.5 344 52.0
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 1.6e-84 317.4 338 53.8
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.1e-84 317.0 341 50.7
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.6e-84 315.8 325 55.4
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 6.1e-84 315.5 341 51.6
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 3.0e-83 313.2 336 53.3
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 6.7e-83 312.0 329 52.9
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.5e-82 310.8 320 54.1
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.5e-82 310.8 312 56.7
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.9e-82 310.5 345 51.0
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 3.3e-82 309.7 336 52.7
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 5.7e-82 308.9 320 55.0
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 7.4e-82 308.5 339 50.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.3e-81 307.8 337 52.2
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.3e-81 307.8 330 53.0
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.3e-81 307.8 325 52.6
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-81 307.4 338 52.4
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.8e-81 306.6 332 52.4
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.8e-80 303.9 324 53.4
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-80 303.9 340 51.2
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 4.1e-80 302.8 324 53.4
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 4.5e-79 299.3 334 51.8
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 5.9e-79 298.9 338 51.8
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 5.9e-79 298.9 338 51.8
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.0e-78 298.1 344 50.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 6.5e-78 295.4 341 51.3
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 6.5e-78 295.4 336 51.2
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 8.5e-78 295.0 351 49.9
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.1e-77 294.7 354 48.3
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.4e-77 294.3 311 52.7
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 3.2e-77 293.1 341 50.7
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 9.4e-77 291.6 336 50.6
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.6e-76 290.8 336 50.3
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 6.1e-76 288.9 336 50.6
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 6.1e-76 288.9 336 50.6
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 7.9e-76 288.5 342 50.9
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.0e-75 288.1 336 50.6
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 3.9e-75 286.2 336 50.3
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-74 284.6 339 49.9
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.1e-74 284.6 339 49.9
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 4.4e-74 282.7 342 48.8
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 8.2e-73 278.5 334 50.9
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.1e-72 278.1 338 49.4
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.8e-72 277.3 324 50.9
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.8e-72 277.3 338 50.0
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.8e-72 277.3 338 50.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 4.1e-72 276.2 337 49.3
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 6.9e-72 275.4 362 48.9
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.7e-68 263.5 341 45.7
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.6e-68 263.1 363 43.5
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 3.0e-67 260.0 330 46.4
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 5.2e-67 259.2 339 44.5
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 6.7e-67 258.8 339 44.2
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.6e-66 256.9 331 48.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.1e-64 251.5 273 50.9
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.6e-63 247.7 322 46.0
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 3.5e-63 246.5 334 43.1
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 7.5e-58 228.8 251 46.6
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 3.2e-53 213.4 327 41.0
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 5.2e-51 206.1 195 56.9
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 2.6e-50 203.8 332 42.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 5.9e-47 192.6 255 43.5
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.0e-34 151.0 136 62.5
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.4e-32 144.8 130 61.5
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.5e-31 140.2 157 46.5
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.9e-30 136.7 139 47.5
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.8e-27 127.9 131 48.9
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.8e-27 127.9 335 33.4
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 4.0e-27 126.7 152 47.4
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.8e-27 125.9 126 49.2
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.2e-26 125.2 199 41.2
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.2e-26 125.2 262 35.5
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.5e-23 113.6 347 28.5
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 4.6e-23 113.2 102 54.9
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.3e-22 111.7 344 30.2
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.6e-20 104.8 263 29.7
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 8.1e-20 102.4 367 25.9
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.4e-19 101.7 346 29.2
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 7.1e-16 89.4 139 34.5
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.6e-12 78.2 64 59.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 1.8e-11 74.7 82 42.7
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.2e-10 72.0 98 44.9
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.9e-09 67.4 96 44.8
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.9e-09 67.4 96 44.8
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 3.5e-07 60.5 65 49.2
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 4.6e-07 60.1 65 49.2
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.0e-06 58.9 70 42.9
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 2.3e-06 57.8 55 50.9
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 3.9e-06 57.0 52 53.8


User provided reference genes

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