Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 7.2e-113 410.6 209 100.0
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.3e-101 370.9 210 91.9
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 4.1e-100 368.2 210 91.4
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.0e-100 367.5 210 91.4
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 5.9e-91 337.8 208 82.2
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 1.9e-81 306.2 209 74.6
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 4.7e-80 301.6 192 80.2
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 4.7e-80 301.6 194 77.3
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 2.3e-79 299.3 197 74.6
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 3.0e-79 298.9 211 73.9
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 6.8e-79 297.7 195 75.9
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 1.5e-78 296.6 192 75.5
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 5.7e-78 294.7 192 76.6
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 9.8e-78 293.9 206 72.8
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 4.9e-77 291.6 197 74.1
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 2.4e-76 289.3 200 71.5
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.1e-76 288.5 166 88.6
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 5.4e-76 288.1 209 69.4
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.6e-75 286.6 251 63.3
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.0e-75 286.2 208 70.2
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.0e-75 286.2 208 70.2
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 2.7e-75 285.8 194 74.2
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 7.8e-75 284.3 211 69.2
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 2.3e-74 282.7 235 68.1
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 6.6e-74 281.2 203 70.0
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.5e-73 280.0 190 74.7
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 3.3e-73 278.9 214 69.2
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 4.3e-73 278.5 206 66.0
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 2.1e-72 276.2 193 70.5
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 2.1e-72 276.2 207 69.6
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 3.6e-72 275.4 209 65.1
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 6.1e-72 274.6 202 70.8
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 6.1e-72 274.6 202 70.8
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 1.0e-71 273.9 197 70.6
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.8e-71 273.1 186 74.2
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 3.1e-71 272.3 205 65.4
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 4.0e-71 271.9 204 63.7
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 5.2e-71 271.6 243 60.5
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.5e-70 270.0 186 73.7
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 2.0e-70 269.6 202 66.3
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 3.4e-70 268.9 198 67.7
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 5.8e-70 268.1 208 64.9
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 9.8e-70 267.3 208 64.9
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 2.9e-69 265.8 207 66.7
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 4.9e-69 265.0 190 68.9
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.4e-68 263.5 194 66.5
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.4e-68 263.5 204 65.7
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 2.4e-68 262.7 289 52.6
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 5.4e-68 261.5 203 63.5
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 9.2e-68 260.8 186 70.4
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 9.2e-68 260.8 198 67.2
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.0e-66 257.3 194 67.5
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 1.0e-66 257.3 193 66.3
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 5.0e-66 255.0 206 61.7
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 8.6e-66 254.2 193 63.2
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 8.6e-66 254.2 205 60.0
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 2.5e-65 252.7 189 64.0
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 2.5e-65 252.7 188 64.4
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 4.3e-65 251.9 200 63.5
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 7.3e-65 251.1 193 63.2
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.2e-64 250.4 199 63.3
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 2.8e-64 249.2 197 63.5
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 6.2e-64 248.1 193 63.2
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 6.2e-64 248.1 193 63.2
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 8.0e-64 247.7 211 61.1
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 8.0e-64 247.7 219 60.7
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 1.4e-63 246.9 193 64.2
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 1.4e-63 246.9 193 64.2
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.8e-63 246.5 193 64.8
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 1.8e-63 246.5 193 63.7
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 2.3e-63 246.1 193 63.7
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 4.0e-63 245.4 199 59.8
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 6.8e-63 244.6 193 63.7
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 1.2e-62 243.8 186 65.6
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 2.0e-62 243.0 192 62.5
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 2.6e-62 242.7 199 61.8
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 2.6e-62 242.7 193 62.7
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 3.4e-62 242.3 199 61.8
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 4.4e-62 241.9 193 61.1
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 5.8e-62 241.5 200 61.5
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 7.5e-62 241.1 301 48.5
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 1.7e-61 240.0 221 55.7
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 4.9e-61 238.4 146 82.2
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 4.1e-60 235.3 193 64.8
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 9.2e-60 234.2 194 60.3
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 2.1e-59 233.0 163 70.6
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.0e-58 230.7 205 57.1
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 1.3e-58 230.3 331 43.8
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.7e-58 229.9 196 59.7
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.1e-57 227.3 193 58.0
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.1e-57 227.3 190 62.6
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 1.5e-57 226.9 206 59.2
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 3.3e-57 225.7 204 56.9
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 5.6e-57 224.9 187 62.6
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 9.5e-57 224.2 190 58.4
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 2.1e-56 223.0 204 57.8
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 6.2e-56 221.5 194 55.2
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 3.4e-54 215.7 142 71.1
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 2.1e-51 206.5 199 55.3
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 6.2e-48 194.9 196 54.1
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.4e-47 193.7 152 64.5
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 2.4e-47 193.0 123 80.5
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 9.9e-46 187.6 148 63.5
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 1.4e-44 183.7 192 50.0
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 8.7e-42 174.5 127 69.3
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 5.6e-41 171.8 199 43.7
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.8e-40 169.5 198 46.5
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.3e-37 160.6 189 45.0
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 4.9e-37 158.7 109 68.8
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 5.4e-36 155.2 191 45.5
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 2.7e-35 152.9 111 70.3
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.7e-35 152.9 146 52.1
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 8.7e-34 147.9 208 45.2
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 2.5e-33 146.4 100 69.0
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.4e-31 140.6 99 69.7
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 3.4e-30 136.0 97 63.9
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.5e-25 120.6 121 53.7
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 2.5e-25 119.8 128 53.9
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 2.0e-22 110.2 81 64.2
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.2e-21 106.7 89 65.2
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 2.9e-21 106.3 90 63.3
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.9e-21 105.5 89 61.8
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.1e-20 104.4 75 69.3
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.2e-20 102.8 89 61.8
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 1.9e-17 93.6 158 38.0
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.7e-17 92.0 86 60.5
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.8e-16 89.7 184 31.5
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 1.4e-15 87.4 57 75.4
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 1.4e-15 87.4 88 47.7
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.0e-14 83.6 52 76.9
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 5.8e-14 82.0 188 31.9
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.0e-13 79.0 49 79.6
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 1.1e-12 77.8 57 75.4
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 1.9e-12 77.0 60 71.7
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 5.7e-09 65.5 55 56.4
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 7.4e-09 65.1 61 52.5
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 9.7e-09 64.7 54 57.4
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 7.7e-06 55.1 186 26.9


User provided reference genes

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