Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 8.4e-214 747.3 540 100.0
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 8.6e-102 375.2 322 63.7
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 8.6e-102 375.2 322 63.7
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 6.2e-92 342.4 271 66.4
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.4e-91 341.3 370 53.5
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 4.3e-85 319.7 379 51.5
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 3.2e-64 250.4 252 54.0
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 5.5e-64 249.6 221 59.3
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.2e-63 248.4 311 46.9
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 2.1e-63 247.7 252 52.8
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 7.9e-63 245.7 165 68.5
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 7.9e-63 245.7 168 67.9
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.1e-61 241.9 320 44.1
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 5.7e-61 239.6 157 71.3
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 5.7e-61 239.6 253 54.2
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 9.7e-61 238.8 194 61.9
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.3e-60 238.4 199 58.8
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.6e-60 238.0 246 54.1
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 2.2e-60 237.7 165 67.3
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 2.2e-60 237.7 280 49.6
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 2.2e-60 237.7 192 59.9
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.8e-60 237.3 280 48.2
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.7e-60 236.9 280 48.2
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.7e-60 236.9 240 53.3
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 4.8e-60 236.5 255 52.2
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.1e-59 235.3 251 52.2
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 3.1e-59 233.8 194 63.4
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 9.0e-59 232.3 156 69.9
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 9.0e-59 232.3 155 71.0
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.2e-58 231.9 250 52.4
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.2e-58 231.9 158 71.5
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.5e-58 231.5 240 52.1
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 2.0e-58 231.1 247 50.6
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 3.4e-58 230.3 319 44.5
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.5e-58 229.9 174 62.6
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 5.9e-58 229.6 174 62.6
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 7.7e-58 229.2 161 66.5
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 7.7e-58 229.2 165 65.5
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 1.0e-57 228.8 205 57.1
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.3e-57 228.4 154 68.2
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.3e-57 228.4 154 68.2
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.3e-57 228.4 217 56.7
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.7e-57 228.0 233 52.8
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 2.2e-57 227.6 161 65.8
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 6.5e-57 226.1 263 51.3
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 8.5e-57 225.7 150 69.3
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 8.5e-57 225.7 165 64.8
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-56 225.3 155 67.7
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.1e-56 225.3 150 69.3
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.4e-56 224.9 164 63.4
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.9e-56 224.6 161 65.2
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 3.2e-56 223.8 331 42.6
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 5.5e-56 223.0 161 65.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 5.5e-56 223.0 160 63.1
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.6e-55 221.5 217 53.9
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.6e-55 221.5 217 53.9
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.1e-55 221.1 161 63.4
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 2.7e-55 220.7 301 45.2
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 2.7e-55 220.7 214 56.1
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 3.6e-55 220.3 269 48.3
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.0e-54 218.8 189 56.6
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.0e-54 218.8 271 46.9
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.0e-54 218.8 271 46.9
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.4e-54 218.4 167 64.1
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 3.0e-54 217.2 263 47.5
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 3.0e-54 217.2 263 47.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 6.7e-54 216.1 307 43.6
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.1e-53 215.3 208 55.8
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 2.0e-53 214.5 221 52.0
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.5e-53 214.2 168 61.3
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.4e-53 212.6 161 63.4
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.3e-52 211.8 161 63.4
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-52 211.8 162 63.0
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-52 211.8 162 63.0
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-52 211.8 162 63.0
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.3e-52 211.8 162 63.0
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 3.7e-52 210.3 217 53.5
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.7e-52 210.3 170 59.4
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 3.7e-52 210.3 264 45.1
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.1e-51 208.8 285 42.1
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.1e-51 208.8 237 50.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 3.1e-51 207.2 167 59.3
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 4.1e-51 206.8 307 40.1
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 6.9e-51 206.1 307 40.1
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.2e-50 205.3 191 55.5
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.5e-50 204.9 146 65.1
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 4.5e-50 203.4 142 64.1
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.7e-49 201.4 161 58.4
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.9e-49 200.7 205 48.8
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 5.0e-49 199.9 142 63.4
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.4e-48 198.4 254 45.3
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.9e-48 198.0 144 63.9
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 5.5e-48 196.4 218 49.5
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.2e-47 195.3 182 53.3
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-46 191.4 161 58.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.5e-45 188.3 267 44.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.7e-44 184.9 155 59.4
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.7e-44 183.7 162 53.1
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 8.2e-44 182.6 258 44.6
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.1e-43 182.2 198 46.0
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 2.4e-43 181.0 147 58.5
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 3.1e-43 180.6 167 55.1
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.0e-43 179.5 205 51.2
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-42 177.9 165 55.2
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.4e-40 171.8 147 55.1
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 3.2e-40 170.6 234 45.3
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 4.2e-40 170.2 136 63.2
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 5.5e-40 169.9 157 54.8
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 8.0e-39 166.0 150 55.3
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.8e-38 164.9 134 56.0
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 2.6e-37 161.0 135 54.1
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 3.3e-37 160.6 231 43.7
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.3e-36 158.7 184 42.9
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.0e-33 149.1 96 72.9
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 6.5e-33 146.4 102 64.7
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 4.2e-32 143.7 160 46.2
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 4.2e-32 143.7 160 46.2
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 5.5e-32 143.3 134 49.3
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 3.6e-31 140.6 206 39.8
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 3.6e-31 140.6 162 50.0
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 6.1e-31 139.8 98 67.3
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 6.1e-31 139.8 163 43.6
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 1.8e-30 138.3 102 58.8
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 3.1e-27 127.5 101 60.4
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 3.1e-27 127.5 136 46.3
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 5.3e-27 126.7 106 59.4
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 5.9e-26 123.2 163 39.9
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.5e-24 117.9 89 69.7
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 3.6e-23 114.0 124 50.0
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 4.7e-23 113.6 86 61.6
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 1.4e-22 112.1 167 38.3
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 5.7e-21 106.7 105 55.2
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 5.7e-21 106.7 79 64.6
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.3e-20 105.5 102 51.0
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.7e-20 104.0 151 43.7
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.1e-19 102.4 110 51.8
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 2.4e-19 101.3 107 51.4
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 2.0e-18 98.2 84 60.7
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.7e-18 97.8 56 71.4
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.5e-18 97.4 64 67.2
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 3.5e-18 97.4 74 59.5
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.5e-16 91.3 56 71.4
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 3.3e-16 90.9 61 65.6
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 6.1e-15 86.7 72 58.3
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 3.0e-14 84.3 126 38.9
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 8.9e-14 82.8 155 37.4
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 5.9e-10 70.1 65 50.8
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 1.5e-08 65.5 64 50.0
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 8.0e-07 59.7 134 33.6
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 1.8e-06 58.5 32 71.9


User provided reference genes

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