Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 6.0e-55 217.2 107 100.0
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 2.1e-39 165.6 96 83.3
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 4.6e-39 164.5 96 83.3
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 4.6e-39 164.5 96 83.3
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 3.9e-38 161.4 96 81.2
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 2.5e-37 158.7 96 81.2
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 9.9e-34 146.7 96 71.9
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 2.9e-33 145.2 96 70.8
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 4.9e-33 144.4 96 72.9
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 4.9e-33 144.4 96 69.8
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 6.4e-33 144.1 96 71.9
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 8.4e-33 143.7 96 69.8
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 5.4e-32 141.0 97 69.1
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 5.4e-32 141.0 96 66.7
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 9.3e-32 140.2 95 67.4
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 1.2e-31 139.8 96 65.6
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 1.6e-31 139.4 95 66.3
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 1.6e-31 139.4 96 68.8
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 3.5e-31 138.3 95 67.4
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 4.6e-31 137.9 96 66.7
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 4.6e-31 137.9 95 68.4
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 7.8e-31 137.1 95 67.4
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.7e-30 136.0 96 66.7
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 1.7e-30 136.0 96 65.6
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 1.7e-30 136.0 96 68.8
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 2.3e-30 135.6 96 67.7
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 1.1e-29 133.3 96 62.5
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 1.1e-29 133.3 96 65.6
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 1.5e-29 132.9 96 67.7
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 1.5e-29 132.9 96 67.7
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 1.5e-29 132.9 96 67.7
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 1.5e-29 132.9 96 63.5
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 1.9e-29 132.5 96 64.6
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 2.5e-29 132.1 96 64.6
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 3.3e-29 131.7 96 65.6
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 3.3e-29 131.7 96 64.6
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 4.3e-29 131.3 96 65.6
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 4.3e-29 131.3 96 65.6
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 5.6e-29 131.0 95 63.2
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 7.3e-29 130.6 96 67.7
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 9.6e-29 130.2 96 66.7
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 1.3e-28 129.8 96 66.7
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 1.3e-28 129.8 93 67.7
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 1.6e-28 129.4 96 66.7
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 2.8e-28 128.6 96 63.5
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 3.6e-28 128.3 96 60.4
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 3.6e-28 128.3 96 60.4
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 4.8e-28 127.9 96 63.5
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 4.8e-28 127.9 96 61.5
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 6.2e-28 127.5 96 64.6
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 8.1e-28 127.1 94 62.8
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 8.1e-28 127.1 95 60.0
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 1.4e-27 126.3 89 64.0
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 2.4e-27 125.6 96 59.4
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 2.4e-27 125.6 94 61.7
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 3.1e-27 125.2 95 63.2
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 4.0e-27 124.8 96 61.5
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 1.5e-26 122.9 96 62.5
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 4.5e-26 121.3 93 62.4
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 4.5e-26 121.3 95 61.1
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 7.6e-26 120.6 97 56.7
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 7.6e-26 120.6 96 62.5
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 7.6e-26 120.6 96 58.3
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 9.9e-26 120.2 93 60.2
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 9.9e-26 120.2 95 61.1
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 9.9e-26 120.2 96 58.3
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 2.2e-25 119.0 96 58.3
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 2.9e-25 118.6 95 60.0
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 2.9e-25 118.6 95 58.9
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 4.9e-25 117.9 96 54.2
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 6.4e-25 117.5 95 60.0
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 1.1e-24 116.7 95 56.8
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.4e-24 116.3 97 59.8
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 1.9e-24 115.9 96 59.4
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 2.4e-24 115.5 96 57.3
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 2.4e-24 115.5 96 57.3
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 2.4e-24 115.5 96 57.3
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 2.4e-24 115.5 86 64.0
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 3.2e-24 115.2 96 58.3
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 4.2e-24 114.8 96 59.4
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 4.2e-24 114.8 97 56.7
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 4.2e-24 114.8 94 59.6
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 5.4e-24 114.4 93 60.2
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 2.1e-23 112.5 95 57.9
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 2.7e-23 112.1 97 55.7
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 2.7e-23 112.1 96 57.3
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 4.6e-23 111.3 92 57.6
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 6.0e-23 110.9 96 56.2
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 6.0e-23 110.9 96 56.2
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 1.0e-22 110.2 94 56.4
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.3e-22 109.8 93 58.1
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.8e-22 109.4 93 55.9
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 1.5e-21 106.3 114 50.0
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 1.9e-21 105.9 93 53.8
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 2.5e-21 105.5 94 54.3
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 4.3e-21 104.8 95 56.8
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 5.6e-21 104.4 96 50.0
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 1.3e-20 103.2 104 48.1
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 2.1e-20 102.4 96 52.1
FAN13G2148 Fragaria x ananassa HOM05D005079 ORTHO05D006362 6.2e-20 100.9 63 77.8
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.8e-19 99.4 86 57.0
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 5.8e-18 94.4 96 55.2
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 1.7e-17 92.8 96 53.1
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.8e-12 75.5 86 46.5
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.8e-12 75.5 86 46.5
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 2.8e-12 75.5 86 46.5
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 4.8e-12 74.7 86 46.5
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 4.8e-12 74.7 86 46.5
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.4e-11 73.2 65 53.8
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 6.9e-11 70.9 95 36.8
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 9.0e-11 70.5 86 43.0
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 1.5e-10 69.7 86 43.0
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 3.8e-09 65.1 98 35.7
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 1.1e-08 63.5 95 34.7
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 1.1e-08 63.5 77 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 5.5e-08 61.2 94 38.3


User provided reference genes

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