Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0497341 Rosa chinensis HOM05D004995 ORTHO05D006034 2.9e-87 325.1 155 100.0
FAN08G3258 Fragaria x ananassa HOM05D004995 ORTHO05D006034 7.9e-32 141.0 139 55.4
RcHm_v2.0_Chr7g0241761 Rosa chinensis HOM05D004995 ORTHO05D006034 1.1e-30 137.1 139 54.7
FAN04G1561 Fragaria x ananassa HOM05D004995 ORTHO05D006034 6.9e-28 127.9 139 51.1
FAN13G2181 Fragaria x ananassa HOM05D004995 ORTHO05D006034 6.9e-28 127.9 139 51.1
Haze_05025 Corylus avellana HOM05D004995 ORTHO05D006034 1.5e-27 126.7 139 49.6
FvH4_5g39450 Fragaria vesca HOM05D004995 ORTHO05D006034 2.6e-27 125.9 139 50.4
FAN18G1671 Fragaria x ananassa HOM05D004995 ORTHO05D006034 2.6e-27 125.9 139 50.4
Potri.014G122400 Populus trichocarpa HOM05D004995 ORTHO05D006034 3.2e-25 119.0 138 47.1
MD03G1296700 Malus domestica HOM05D004995 ORTHO05D006034 7.1e-25 117.9 139 46.8
Prupe.8G270500 Prunus persica HOM05D004995 ORTHO05D006034 9.3e-25 117.5 139 46.8
Gorai.008G140900 Gossypium raimondii HOM05D004995 ORTHO05D006034 1.6e-24 116.7 138 46.4
CsaV3_7G029870 Cucumis sativus L. HOM05D004995 ORTHO05D006034 2.7e-24 115.9 63 82.5
QL12p020317 Quercus lobata HOM05D004995 ORTHO05D006034 2.7e-24 115.9 139 45.3
Sabra14G0090800 Salix brachista HOM05D004995 ORTHO05D006034 3.5e-24 115.5 63 84.1
Atru.chr5.1036 Acer truncatum HOM05D004995 ORTHO05D006034 4.6e-24 115.2 70 78.6
Sed0026389 Sechium edule HOM05D004995 ORTHO05D006034 4.6e-24 115.2 63 81.0
Gohir.D12G129700 Gossypium hirsutum HOM05D004995 ORTHO05D006034 6.0e-24 114.8 63 84.1
Dinv10081 Davidia involucrata HOM05D004995 ORTHO05D006034 7.9e-24 114.4 63 82.5
Cpa.g.sc18.23 Carica papaya HOM05D004995 ORTHO05D006034 1.0e-23 114.0 138 44.9
Gohir.A12G126200 Gossypium hirsutum HOM05D004995 ORTHO05D006034 1.3e-23 113.6 62 83.9
CiPaw.07G116000 Carya illinoinensis HOM05D004995 ORTHO05D006034 1.8e-23 113.2 139 44.6
Haze_05021 Corylus avellana HOM05D004995 ORTHO05D006034 1.8e-23 113.2 139 45.3
Cfa005817 Carpinus fangiana HOM05D004995 ORTHO05D006034 2.3e-23 112.8 139 44.6
Glyma.02G013500 Glycine max HOM05D004995 ORTHO05D006034 3.0e-23 112.5 139 45.3
Glyma.10G014100 Glycine max HOM05D004995 ORTHO05D006034 3.0e-23 112.5 139 45.3
Aa31LG5G1780 Aethionema arabicum HOM05D004995 ORTHO05D006034 3.9e-23 112.1 63 79.4
Dinv33107 Davidia involucrata HOM05D004995 ORTHO05D006034 3.9e-23 112.1 65 76.9
Migut.D00092 Erythranthe guttata HOM05D004995 ORTHO05D006034 3.9e-23 112.1 66 75.8
Manes.01G226600 Manihot esculenta HOM05D004995 ORTHO05D006034 5.1e-23 111.7 63 81.0
Potri.002G197400 Populus trichocarpa HOM05D004995 ORTHO05D006034 5.1e-23 111.7 138 44.2
COL.COLO4_23251 Corchorus olitorius HOM05D004995 ORTHO05D006034 6.7e-23 111.3 63 79.4
Nitab4.5_0000363g0330 Nicotiana tabacum HOM05D004995 ORTHO05D006034 6.7e-23 111.3 68 76.5
Sabra02G0160100 Salix brachista HOM05D004995 ORTHO05D006034 8.7e-23 110.9 138 44.2
AL6G51110 Arabidopsis lyrata HOM05D004995 ORTHO05D006034 1.1e-22 110.5 70 71.4
Medtr1g087290 Medicago truncatula HOM05D004995 ORTHO05D006034 1.1e-22 110.5 139 44.6
CSS0035665 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 1.5e-22 110.2 65 75.4
Ciclev10024590m.g Citrus clementina HOM05D004995 ORTHO05D006034 1.5e-22 110.2 139 43.9
Duzib138G1673 Durio zibethinus HOM05D004995 ORTHO05D006034 1.5e-22 110.2 63 79.4
Oeu008461.1 Olea europaea HOM05D004995 ORTHO05D006034 1.5e-22 110.2 63 77.8
Thecc.01G311300 Theobroma cacao HOM05D004995 ORTHO05D006034 1.5e-22 110.2 138 43.5
CSS0012776 Camellia sinensis var. sinensis HOM05D004995 ORTHO05D006034 1.9e-22 109.8 65 73.8
Cc02_g27310 Coffea canephora HOM05D004995 ORTHO05D006034 1.9e-22 109.8 140 43.6
VMungo0720G1458 Vigna mungo HOM05D004995 ORTHO05D006034 1.9e-22 109.8 139 44.6
Lalb_Chr02g0146751 Lupinus albus HOM05D004995 ORTHO05D006034 2.5e-22 109.4 63 79.4
Solyc06g009680.4 Solanum lycopersicum HOM05D004995 ORTHO05D006034 2.5e-22 109.4 63 77.8
Hund09619 Selenicereus undatus HOM05D004995 ORTHO05D006034 3.3e-22 109.0 63 81.0
Sopen06g004320 Solanum pennellii HOM05D004995 ORTHO05D006034 3.3e-22 109.0 63 76.2
TAR633G0044 Trochodendron aralioides HOM05D004995 ORTHO05D006034 3.3e-22 109.0 63 77.8
CAN.G1280.22 Capsicum annuum HOM05D004995 ORTHO05D006034 4.3e-22 108.6 70 71.4
HanXRQChr06g0167831 Helianthus annuus HOM05D004995 ORTHO05D006034 4.3e-22 108.6 63 74.6
TWI75G0138 Tripterygium wilfordii HOM05D004995 ORTHO05D006034 4.3e-22 108.6 63 79.4
Lj5g0006877 Lotus japonicus HOM05D004995 ORTHO05D006034 5.7e-22 108.2 63 79.4
Nitab4.5_0013957g0010 Nicotiana tabacum HOM05D004995 ORTHO05D006034 5.7e-22 108.2 66 72.7
SGA_v2.0_scaffold376G50269 Striga asiatica HOM05D004995 ORTHO05D006034 5.7e-22 108.2 139 43.2
Actinidia21007 Actinidia chinensis HOM05D004995 ORTHO05D006034 9.6e-22 107.5 63 76.2
Ca_10292_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 9.6e-22 107.5 63 79.4
Phvul.007G215300 Phaseolus vulgaris HOM05D004995 ORTHO05D006034 9.6e-22 107.5 139 43.9
TPR.G19766 Trifolium pratense HOM05D004995 ORTHO05D006034 1.3e-21 107.1 139 43.9
Sc24g0003210 Simmondsia chinensis HOM05D004995 ORTHO05D006034 1.6e-21 106.7 63 76.2
BraA03t12302Z Brassica rapa HOM05D004995 ORTHO05D006034 2.1e-21 106.3 63 74.6
Thhalv10028365m.g Eutrema salsugineum HOM05D004995 ORTHO05D006034 2.1e-21 106.3 63 74.6
Peaxi162Scf00001g10213 Petunia axillaris HOM05D004995 ORTHO05D006034 2.1e-21 106.3 139 43.2
PGSC0003DMG400009006 Solanum tuberosum HOM05D004995 ORTHO05D006034 2.1e-21 106.3 66 72.7
Actinidia25841 Actinidia chinensis HOM05D004995 ORTHO05D006034 2.8e-21 105.9 63 76.2
Sp6g02000 Schrenkiella parvula HOM05D004995 ORTHO05D006034 2.8e-21 105.9 63 73.0
Aqoxy5G04290 Aquilegia oxysepala HOM05D004995 ORTHO05D006034 3.7e-21 105.5 74 66.2
BcaB01g02426 Brassica carinata HOM05D004995 ORTHO05D006034 3.7e-21 105.5 63 73.0
CARHR250290 Cardamine hirsuta HOM05D004995 ORTHO05D006034 3.7e-21 105.5 70 71.4
A03p31220 Brassica napus HOM05D004995 ORTHO05D006034 4.8e-21 105.1 63 73.0
BolC3t16092H Brassica oleracea HOM05D004995 ORTHO05D006034 4.8e-21 105.1 63 73.0
CAN.G362.42 Capsicum annuum HOM05D004995 ORTHO05D006034 4.8e-21 105.1 78 61.5
Nn3g21651 Nelumbo nucifera HOM05D004995 ORTHO05D006034 4.8e-21 105.1 63 76.2
C03p38070 Brassica napus HOM05D004995 ORTHO05D006034 6.2e-21 104.8 63 73.0
Nitab4.5_0006144g0040 Nicotiana tabacum HOM05D004995 ORTHO05D006034 6.2e-21 104.8 63 76.2
Psat6g162360 Pisum sativum HOM05D004995 ORTHO05D006034 6.2e-21 104.8 63 74.6
Lsat_1_v5_gn_8_165441 Lactuca sativa HOM05D004995 ORTHO05D006034 8.2e-21 104.4 63 71.4
Oeu047387.1 Olea europaea HOM05D004995 ORTHO05D006034 8.2e-21 104.4 63 74.6
PSO357G0286 Papaver somniferum HOM05D004995 ORTHO05D006034 8.2e-21 104.4 139 40.3
arahy.Tifrunner.gnm1.ann1.KJ11SU Arachis hypogaea HOM05D004995 ORTHO05D006034 1.1e-20 104.0 63 74.6
arahy.Tifrunner.gnm1.ann1.SI6M6S Arachis hypogaea HOM05D004995 ORTHO05D006034 1.1e-20 104.0 63 74.6
CANSAT25G2589 Cannabis sativa HOM05D004995 ORTHO05D006034 1.1e-20 104.0 63 73.0
DCAR_012367 Daucus carota HOM05D004995 ORTHO05D006034 1.1e-20 104.0 63 76.2
PGR044G2031 Punica granatum HOM05D004995 ORTHO05D006034 1.1e-20 104.0 63 73.0
Rhsim01G0290000 Rhododendron simsii HOM05D004995 ORTHO05D006034 1.1e-20 104.0 63 74.6
Carub.0006s3511 Capsella rubella HOM05D004995 ORTHO05D006034 1.8e-20 103.2 63 68.3
ECA236G3500 Erigeron canadensis HOM05D004995 ORTHO05D006034 1.8e-20 103.2 69 69.6
PSO170G6821 Papaver somniferum HOM05D004995 ORTHO05D006034 1.8e-20 103.2 63 71.4
AT4G02110 Arabidopsis thaliana HOM05D004995 ORTHO05D006034 2.4e-20 102.8 63 73.0
BcaC01g06775 Brassica carinata HOM05D004995 ORTHO05D006034 3.1e-20 102.4 62 72.6
Lj1A19G23 Lonicera japonica HOM05D004995 ORTHO05D006034 3.1e-20 102.4 200 34.5
THA.LOC104825943 Tarenaya hassleriana HOM05D004995 ORTHO05D006034 3.1e-20 102.4 63 71.4
EL10As5g23507 Beta vulgaris HOM05D004995 ORTHO05D006034 4.0e-20 102.1 63 74.6
MBI18_g28452_MAGBIO Magnolia biondii HOM05D004995 ORTHO05D006034 4.0e-20 102.1 68 70.6
Ca_30263_v3 Cicer arietinum L. HOM05D004995 ORTHO05D006034 6.9e-20 101.3 59 79.7
Peaxi162Scf00058g03010 Petunia axillaris HOM05D004995 ORTHO05D006034 6.9e-20 101.3 63 74.6
AUR62011830 Chenopodium quinoa HOM05D004995 ORTHO05D006034 1.5e-19 100.1 63 73.0
HanXRQChr15g0464181 Helianthus annuus HOM05D004995 ORTHO05D006034 2.0e-19 99.8 63 69.8
ATR0706G147 Amborella trichopoda HOM05D004995 ORTHO05D006034 2.6e-19 99.4 76 60.5
AagrBONN_evm.TU.Sc2ySwM_368.2357 Anthoceros agrestis HOM05D004995 ORTHO05D006034 5.8e-19 98.2 75 61.3
AUR62024673 Chenopodium quinoa HOM05D004995 ORTHO05D006034 5.8e-19 98.2 63 71.4
HPP92_002051 Vanilla planifolia HOM05D004995 ORTHO05D006034 1.7e-18 96.7 78 55.1
Zm00001eb014460 Zea mays HOM05D004995 ORTHO05D006034 1.1e-17 94.0 64 60.9
DCAR_005771 Daucus carota HOM05D004995 ORTHO05D006034 1.9e-17 93.2 62 66.1
Mapoly0010s0152 Marchantia polymorpha HOM05D004995 ORTHO05D006034 3.2e-17 92.4 63 65.1
Ah.11g049350 Amaranthus hybridus HOM05D004995 ORTHO05D006034 1.2e-16 90.5 78 57.7
MELO3C015934.2 Cucumis melo HOM05D004995 ORTHO05D006034 2.1e-16 89.7 44 90.9
Os03g0304400 Oryza sativa ssp. japonica HOM05D004995 ORTHO05D006034 6.1e-16 88.2 64 60.9
SMO367G0571 Selaginella moellendorffii HOM05D004995 ORTHO05D006034 1.3e-13 80.5 74 51.4
Zm00001eb331400 Zea mays HOM05D004995 ORTHO05D006034 1.3e-13 80.5 64 56.2
CBR_g29774 Chara braunii HOM05D004995 ORTHO05D006034 1.4e-12 77.0 131 36.6
SHI20084 Sapria himalayana HOM05D004995 ORTHO05D006034 4.1e-12 75.5 60 63.3
MD11G1316300 Malus domestica HOM05D004995 ORTHO05D006034 5.5e-09 65.1 110 37.3
Nitab4.5_0001301g0150 Nicotiana tabacum HOM05D004995 ORTHO05D006034 7.9e-08 61.2 39 66.7
vmacro15118 Vaccinium macrocarpon HOM05D004995 ORTHO05D006034 3.0e-07 59.3 39 66.7
Eucgr.K03537 Eucalyptus grandis HOM05D004995 ORTHO05D006034 1.5e-06 57.0 34 76.5
HanXRQChr15g0482091 Helianthus annuus HOM05D004995 ORTHO05D006034 2.5e-06 56.2 55 47.3


User provided reference genes

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