Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 5.7e-211 737.3 356 100.0
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 8.9e-164 580.5 347 83.0
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.0e-163 579.3 347 82.7
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.8e-163 577.8 347 82.1
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 9.2e-161 570.5 347 81.8
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.3e-159 566.6 347 80.1
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.3e-158 561.6 347 80.1
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 1.6e-149 533.1 343 74.6
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 6.9e-148 527.7 345 74.5
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 5.3e-140 501.5 345 68.7
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 9.0e-140 500.7 349 69.1
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 5.8e-139 498.0 338 71.0
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 6.4e-138 494.6 342 70.2
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 8.4e-138 494.2 350 70.6
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 1.6e-136 490.0 346 71.1
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 1.6e-136 490.0 348 67.2
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 1.6e-136 490.0 338 69.8
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 7.9e-136 487.6 340 67.9
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 1.3e-135 486.9 340 69.4
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 2.3e-135 486.1 341 69.5
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 3.0e-135 485.7 340 69.4
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.1e-134 483.8 340 69.1
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 1.5e-134 483.4 340 69.1
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 7.4e-134 481.1 340 66.2
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 9.6e-134 480.7 351 66.4
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 9.6e-134 480.7 341 68.0
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 1.3e-133 480.3 338 66.3
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 1.6e-133 479.9 343 69.4
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 2.1e-133 479.6 341 68.6
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 2.1e-133 479.6 351 67.2
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 2.8e-133 479.2 338 67.2
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 8.1e-133 477.6 341 68.3
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 8.1e-133 477.6 345 67.5
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 1.1e-132 477.2 342 67.5
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 2.4e-132 476.1 340 66.2
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 2.4e-132 476.1 350 66.3
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 1.5e-131 473.4 354 65.8
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 2.6e-131 472.6 342 65.2
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 4.5e-131 471.9 344 67.4
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 5.8e-131 471.5 345 67.8
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 6.5e-130 468.0 345 64.3
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 1.9e-129 466.5 341 65.7
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 3.2e-129 465.7 342 66.1
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 4.6e-128 461.8 345 64.3
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 6.0e-128 461.5 338 65.4
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 7.9e-128 461.1 341 63.0
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 1.8e-127 459.9 341 63.0
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 2.3e-127 459.5 341 64.8
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 3.0e-127 459.1 342 66.4
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 5.1e-127 458.4 341 62.8
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 6.7e-127 458.0 350 64.0
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 8.7e-127 457.6 341 62.8
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 1.1e-126 457.2 342 62.9
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 1.5e-126 456.8 342 64.0
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 1.5e-126 456.8 342 63.5
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 2.5e-126 456.1 350 64.3
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 3.3e-126 455.7 338 63.9
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 4.3e-126 455.3 350 63.4
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 5.7e-126 454.9 341 64.2
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 7.4e-126 454.5 338 62.7
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 9.6e-126 454.1 346 64.7
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 9.6e-126 454.1 343 62.1
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 1.3e-125 453.8 400 58.5
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 1.3e-125 453.8 340 62.6
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 2.1e-125 453.0 350 62.9
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 3.7e-125 452.2 338 63.3
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 4.8e-125 451.8 341 63.9
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 8.2e-125 451.1 340 64.4
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 8.2e-125 451.1 342 62.9
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 1.8e-124 449.9 342 63.2
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 2.4e-124 449.5 342 62.6
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 2.4e-124 449.5 351 62.1
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 2.4e-124 449.5 351 62.1
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 5.3e-124 448.4 341 64.2
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 4.5e-123 445.3 340 61.2
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 5.8e-123 444.9 342 64.0
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 4.2e-121 438.7 338 61.2
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 1.6e-120 436.8 344 60.8
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 2.7e-120 436.0 340 62.4
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 3.5e-120 435.6 342 61.7
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.3e-119 433.7 342 63.5
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 5.1e-119 431.8 342 62.0
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 3.3e-118 429.1 341 61.9
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 4.3e-118 428.7 374 57.8
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 5.7e-118 428.3 344 61.0
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 7.4e-118 427.9 339 60.2
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 2.2e-117 426.4 376 57.4
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 3.7e-117 425.6 341 61.6
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 3.4e-115 419.1 338 58.0
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 3.8e-114 415.6 340 58.8
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 6.5e-114 414.8 337 58.2
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 9.4e-113 411.0 351 58.4
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 4.6e-112 408.7 345 57.1
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 1.4e-111 407.1 348 55.7
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 3.0e-111 406.0 342 59.1
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 3.0e-111 406.0 342 59.4
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 5.1e-111 405.2 344 60.2
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 8.8e-111 404.4 338 57.1
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 6.3e-109 398.3 292 67.8
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 1.7e-106 390.2 341 57.8
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 2.7e-104 382.9 338 54.1
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 1.4e-103 380.6 439 47.6
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 3.1e-100 369.4 341 55.1
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 3.5e-99 365.9 347 54.2
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 5.9e-99 365.2 266 65.4
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 8.2e-93 344.7 256 64.1
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 2.4e-92 343.2 254 63.8
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 1.6e-91 340.5 342 49.1
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.8e-87 327.0 290 57.6
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 2.2e-82 310.1 234 59.8
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 9.4e-81 304.7 208 76.0
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 7.7e-75 285.0 218 63.8
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.0e-74 284.6 183 72.7
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 2.1e-72 276.9 350 42.9
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 4.9e-69 265.8 348 39.7
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 5.6e-65 252.3 202 66.8
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.9e-60 237.3 338 38.5
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 4.1e-60 236.1 192 67.2
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 7.5e-54 215.3 182 65.9
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.5e-54 215.3 233 53.6
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 2.9e-53 213.4 179 60.3
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.1e-44 184.9 168 58.3
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 5.1e-42 176.0 263 37.6
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 1.0e-26 125.2 81 69.1
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.3e-23 112.8 106 61.3
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 9.0e-23 112.1 58 89.7
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 9.0e-23 112.1 58 89.7
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 9.0e-23 112.1 58 89.7
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 7.6e-22 109.0 58 87.9
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 3.2e-20 103.6 126 50.8
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 2.1e-19 100.9 93 65.6
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 4.6e-19 99.8 195 30.3
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 7.9e-19 99.0 93 64.5
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.3e-18 97.4 51 88.2
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.3e-18 97.4 51 88.2
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 8.1e-16 89.0 168 32.1
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 4.5e-14 83.2 63 68.3
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.3e-13 81.6 61 70.5
FAN19G1473 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.1e-12 78.6 100 51.0
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.8e-10 71.2 87 47.1
FAN04G0473 Fragaria x ananassa HOM05D015355 ORTHO05D007549 3.0e-10 70.5 61 62.3
SHI23126 Sapria himalayana HOM05D006263 ORTHO05D007549 1.2e-06 58.5 87 37.9


User provided reference genes

Program Settings