Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 3.3e-167 591.7 307 100.0
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.1e-116 422.9 313 75.4
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 6.0e-116 421.4 316 75.0
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.0e-115 420.6 314 75.5
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.1e-112 410.6 316 74.1
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.1e-98 364.0 285 72.3
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 6.9e-64 248.4 335 50.7
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 2.6e-63 246.5 333 50.8
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 2.2e-62 243.4 327 51.4
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 3.7e-49 199.5 313 46.0
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 1.8e-48 197.2 331 45.3
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.8e-48 197.2 328 43.9
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.2e-47 194.5 331 44.4
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 5.9e-47 192.2 330 44.2
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 5.9e-47 192.2 330 44.2
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.2e-46 190.3 336 43.8
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 8.5e-46 188.3 320 45.3
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 8.5e-46 188.3 332 44.3
FAN28G1691 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.1e-45 188.0 161 65.2
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 4.2e-45 186.0 317 45.4
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 5.5e-45 185.7 317 45.7
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 6.7e-43 178.7 337 44.2
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 1.2e-42 177.9 325 44.6
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.8e-41 173.3 315 44.1
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 4.8e-41 172.6 313 41.9
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 6.3e-41 172.2 317 41.6
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.8e-40 170.6 327 42.2
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 9.1e-40 168.3 322 44.1
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.9e-37 160.6 307 41.4
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 4.2e-37 159.5 309 40.5
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 5.5e-37 159.1 323 40.9
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.2e-36 157.9 311 39.2
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 1.6e-36 157.5 316 44.3
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 1.6e-36 157.5 316 39.2
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 3.6e-36 156.4 317 42.9
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 6.1e-36 155.6 313 35.8
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 3.0e-35 153.3 306 38.2
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 2.0e-34 150.6 321 39.9
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 2.0e-34 150.6 318 38.4
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 2.0e-34 150.6 320 40.6
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 2.0e-34 150.6 328 37.5
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 2.6e-34 150.2 281 43.1
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 2.6e-34 150.2 319 38.2
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 5.7e-34 149.1 319 39.5
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 9.8e-34 148.3 311 37.9
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 9.8e-34 148.3 306 38.9
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.3e-33 147.9 328 38.7
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.7e-33 147.5 306 38.6
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 2.2e-33 147.1 311 37.9
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 2.2e-33 147.1 318 37.7
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.2e-33 147.1 321 38.9
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 6.3e-33 145.6 313 39.0
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.1e-32 144.8 315 37.5
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.4e-32 144.4 320 39.7
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.8e-32 144.1 324 39.8
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.4e-32 143.7 319 38.2
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 2.4e-32 143.7 323 39.6
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 4.1e-32 142.9 318 36.5
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.1e-32 142.9 305 38.7
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 5.4e-32 142.5 320 39.7
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.2e-31 141.4 282 40.1
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 1.2e-31 141.4 320 38.4
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 3.5e-31 139.8 330 39.7
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 3.5e-31 139.8 321 38.0
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 5.9e-31 139.0 319 37.3
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 7.7e-31 138.7 321 36.8
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 1.3e-30 137.9 309 37.5
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 2.9e-30 136.7 313 37.7
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 3.8e-30 136.3 315 37.5
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 5.0e-30 136.0 317 37.5
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 6.5e-30 135.6 302 39.1
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.1e-29 134.8 330 39.1
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.9e-29 134.0 319 37.3
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 2.5e-29 133.7 313 39.9
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.5e-29 133.7 324 36.7
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 5.5e-29 132.5 320 35.6
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 5.5e-29 132.5 305 36.7
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 7.2e-29 132.1 317 35.3
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 2.1e-28 130.6 315 36.2
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 4.7e-28 129.4 311 34.7
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 6.1e-28 129.0 331 37.2
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 8.0e-28 128.6 314 33.8
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.8e-27 127.5 333 36.0
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 5.2e-27 125.9 321 33.3
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 1.5e-26 124.4 322 34.5
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.5e-26 124.4 185 45.9
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.5e-26 124.4 314 35.0
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.6e-26 123.6 326 34.4
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.4e-26 123.2 310 37.4
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.4e-26 122.9 316 35.8
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.4e-26 122.9 309 36.2
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 5.7e-26 122.5 320 37.5
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 9.8e-26 121.7 331 36.3
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.3e-25 121.3 318 34.0
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 4.9e-25 119.4 322 36.3
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.8e-24 117.5 310 34.5
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 5.4e-24 115.9 314 37.3
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 9.2e-24 115.2 325 33.8
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 9.2e-24 115.2 329 35.9
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.2e-23 114.8 198 42.4
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 2.0e-23 114.0 95 65.3
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 3.5e-23 113.2 321 33.6
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 4.5e-23 112.8 329 34.3
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 1.0e-22 111.7 309 33.0
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-22 111.3 180 42.8
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 1.3e-22 111.3 318 31.8
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.7e-22 110.9 184 40.8
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.7e-22 110.9 319 32.3
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.7e-22 110.9 329 33.1
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.3e-22 110.5 316 33.2
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.9e-22 110.2 312 33.0
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.9e-22 110.2 305 35.1
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 3.8e-22 109.8 316 32.9
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 3.8e-22 109.8 329 35.9
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 6.6e-22 109.0 317 32.5
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 6.6e-22 109.0 289 33.9
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-21 107.8 315 32.4
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 1.5e-21 107.8 315 32.4
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 1.5e-21 107.8 315 32.4
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 1.5e-21 107.8 315 32.4
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 3.3e-21 106.7 318 32.7
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 9.5e-21 105.1 280 35.4
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-20 104.8 316 33.2
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.2e-20 104.8 289 36.3
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 2.1e-20 104.0 192 40.1
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 2.8e-20 103.6 316 30.4
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 2.8e-20 103.6 192 39.6
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 2.8e-20 103.6 167 46.7
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 3.6e-20 103.2 196 37.2
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 3.6e-20 103.2 171 42.1
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 3.6e-20 103.2 327 32.4
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 3.6e-20 103.2 182 37.9
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 6.1e-20 102.4 315 32.4
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 6.1e-20 102.4 322 31.1
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 6.1e-20 102.4 276 36.2
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 8.0e-20 102.1 325 31.4
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 8.0e-20 102.1 315 32.4
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.0e-19 101.7 175 41.1
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.0e-19 101.7 175 41.1
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.0e-19 101.7 314 33.8
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.4e-19 101.3 167 42.5
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.8e-19 100.9 102 54.9
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 2.3e-19 100.5 305 31.1
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.3e-19 100.5 322 33.2
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 3.0e-19 100.1 312 30.4
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.0e-19 99.8 308 34.1
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 6.8e-19 99.0 167 43.1
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.0e-18 97.4 175 41.1
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 2.6e-18 97.1 315 31.4
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.4e-18 96.7 191 40.3
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.4e-18 96.7 303 31.4
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.4e-18 96.3 172 38.4
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 5.7e-18 95.9 303 31.0
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 4.9e-17 92.8 319 32.3
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 4.9e-17 92.8 179 40.2
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.4e-16 90.5 301 30.2
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 4.1e-16 89.7 213 36.2
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 5.4e-16 89.4 116 46.6
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 9.2e-16 88.6 311 31.5
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 2.0e-15 87.4 311 30.9
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 2.7e-15 87.0 122 45.1
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 4.6e-15 86.3 305 33.4
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.0e-14 85.1 315 30.2
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 1.0e-14 85.1 270 34.1
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.5e-13 81.3 308 29.9
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 5.6e-13 79.3 173 38.2
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 5.6e-13 79.3 314 30.6
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.2e-12 78.2 312 27.6
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.2e-12 78.2 305 28.9
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.1e-12 77.4 164 39.6
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 4.7e-12 76.3 93 44.1
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.8e-11 74.3 92 46.7
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 4.0e-11 73.2 270 30.0
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 8.9e-11 72.0 301 27.9
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.0e-10 70.9 305 29.2
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 7.5e-10 68.9 152 31.6
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 9.8e-10 68.6 64 60.9
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 2.4e-08 63.9 144 30.6
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 7.0e-08 62.4 190 33.2
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.6e-07 61.2 311 27.7
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 7.8e-07 58.9 291 29.2
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 1.0e-06 58.5 123 35.0
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.7e-06 57.8 304 26.6


User provided reference genes

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