Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0496911 Rosa chinensis HOM05D003439 ORTHO05D025162 3.0e-48 194.9 101 100.0
RcHm_v2.0_Chr1g0335231 Rosa chinensis HOM05D003439 ORTHO05D004062 6.9e-29 130.6 67 92.5
RcHm_v2.0_Chr2g0118851 Rosa chinensis HOM05D003439 ORTHO05D004062 6.9e-29 130.6 67 92.5
RcHm_v2.0_Chr4g0396851 Rosa chinensis HOM05D003439 ORTHO05D004062 6.9e-29 130.6 67 92.5
RcHm_v2.0_Chr6g0268661 Rosa chinensis HOM05D003439 ORTHO05D004062 6.9e-29 130.6 67 92.5
RcHm_v2.0_Chr6g0277741 Rosa chinensis HOM05D003439 ORTHO05D004062 6.9e-29 130.6 67 92.5
RcHm_v2.0_Chr5g0011001 Rosa chinensis HOM05D003439 ORTHO05D004062 1.5e-28 129.4 67 91.0
RcHm_v2.0_Chr7g0198761 Rosa chinensis HOM05D003439 ORTHO05D004062 5.9e-28 127.5 67 89.6
RcHm_v2.0_Chr1g0323891 Rosa chinensis HOM05D003439 ORTHO05D025162 5.7e-23 110.9 100 63.0
RcHm_v2.0_Chr2g0126511 Rosa chinensis HOM05D003439 ORTHO05D025162 3.7e-22 108.2 57 93.0
RcHm_v2.0_Chr2g0159271 Rosa chinensis HOM05D003439 ORTHO05D004062 2.6e-20 102.1 113 54.0
MD09G1109000 Malus domestica HOM05D003439 ORTHO05D004062 2.5e-18 95.5 113 49.6
Duzib248G0706 Durio zibethinus HOM05D003439 ORTHO05D004062 3.2e-18 95.1 114 47.4
Thecc.02G314800 Theobroma cacao HOM05D003439 ORTHO05D004062 3.2e-18 95.1 114 47.4
Prupe.3G217100 Prunus persica HOM05D003439 ORTHO05D004062 4.2e-18 94.7 113 50.4
MD17G1097000 Malus domestica HOM05D003439 ORTHO05D004062 5.5e-18 94.4 113 48.7
FAN02G4351 Fragaria x ananassa HOM05D003439 ORTHO05D004062 7.2e-18 94.0 113 51.3
FAN09G3949 Fragaria x ananassa HOM05D003439 ORTHO05D004062 7.2e-18 94.0 113 51.3
GSVIVG01030423001 Vitis vinifera HOM05D003439 ORTHO05D004062 1.2e-17 93.2 113 47.8
FAN05G3766 Fragaria x ananassa HOM05D003439 ORTHO05D004062 1.6e-17 92.8 113 50.4
FvH4_6g43170 Fragaria vesca HOM05D003439 ORTHO05D004062 2.7e-17 92.0 113 50.4
FAN14G2769 Fragaria x ananassa HOM05D003439 ORTHO05D004062 2.7e-17 92.0 113 50.4
Duzib251G0240 Durio zibethinus HOM05D003439 ORTHO05D004062 3.6e-17 91.7 113 46.0
Gohir.D02G133600 Gossypium hirsutum HOM05D003439 ORTHO05D004062 3.6e-17 91.7 112 47.3
Gorai.005G149600 Gossypium raimondii HOM05D003439 ORTHO05D004062 3.6e-17 91.7 112 47.3
arahy.Tifrunner.gnm1.ann1.N0VMF0 Arachis hypogaea HOM05D003439 ORTHO05D004062 6.1e-17 90.9 113 46.9
arahy.Tifrunner.gnm1.ann1.S34EA0 Arachis hypogaea HOM05D003439 ORTHO05D004062 6.1e-17 90.9 113 46.9
ClCG02G008740 Citrullus lanatus HOM05D003439 ORTHO05D004062 6.1e-17 90.9 113 45.1
Gohir.A03G108400 Gossypium hirsutum HOM05D003439 ORTHO05D004062 6.1e-17 90.9 112 47.3
AT1G05180 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 7.9e-17 90.5 113 46.0
Dinv39712 Davidia involucrata HOM05D003439 ORTHO05D004062 7.9e-17 90.5 113 48.7
Eucgr.A01128 Eucalyptus grandis HOM05D003439 ORTHO05D004062 7.9e-17 90.5 112 48.2
COL.COLO4_27713 Corchorus olitorius HOM05D003439 ORTHO05D004062 1.0e-16 90.1 113 47.8
BcaNung05930 Brassica carinata HOM05D003439 ORTHO05D004062 1.4e-16 89.7 113 45.1
Ciclev10014908m.g Citrus clementina HOM05D003439 ORTHO05D004062 1.8e-16 89.4 112 46.4
Sed0015779 Sechium edule HOM05D003439 ORTHO05D004062 1.8e-16 89.4 113 44.2
SalBow7G1393 Salvia bowleyana HOM05D003439 ORTHO05D004062 2.3e-16 89.0 113 45.1
SGA_v2.0_scaffold70G23396 Striga asiatica HOM05D003439 ORTHO05D004062 3.0e-16 88.6 98 49.0
VMungo1127G2094 Vigna mungo HOM05D003439 ORTHO05D004062 3.0e-16 88.6 113 46.0
HanXRQChr05g0144141 Helianthus annuus HOM05D003439 ORTHO05D004062 3.9e-16 88.2 113 45.1
Aa31LG1G19570 Aethionema arabicum HOM05D003439 ORTHO05D004062 5.1e-16 87.8 113 45.1
MSTRG.6579 Avicennia marina HOM05D003439 ORTHO05D004062 5.1e-16 87.8 113 45.1
PGR042G0375 Punica granatum HOM05D003439 ORTHO05D004062 5.1e-16 87.8 112 44.6
Sed0026537 Sechium edule HOM05D003439 ORTHO05D004062 5.1e-16 87.8 113 43.4
AL1G14940 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 6.7e-16 87.4 112 45.5
A10p03710 Brassica napus HOM05D003439 ORTHO05D004062 6.7e-16 87.4 113 44.2
C05p03410 Brassica napus HOM05D003439 ORTHO05D004062 6.7e-16 87.4 113 43.4
BolC5t29120H Brassica oleracea HOM05D003439 ORTHO05D004062 6.7e-16 87.4 113 43.4
BraA08t35555Z Brassica rapa HOM05D003439 ORTHO05D004062 6.7e-16 87.4 113 44.2
BraA10t42644Z Brassica rapa HOM05D003439 ORTHO05D004062 6.7e-16 87.4 113 44.2
Medtr4g048220 Medicago truncatula HOM05D003439 ORTHO05D004062 6.7e-16 87.4 113 46.0
Sp4g14780 Schrenkiella parvula HOM05D003439 ORTHO05D004062 6.7e-16 87.4 103 46.6
Carub.0001s0445 Capsella rubella HOM05D003439 ORTHO05D004062 8.8e-16 87.0 113 44.2
CsaV3_2G034930 Cucumis sativus L. HOM05D003439 ORTHO05D004062 8.8e-16 87.0 113 43.4
Thhalv10016512m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 8.8e-16 87.0 110 43.6
Lj3g0022714 Lotus japonicus HOM05D003439 ORTHO05D004062 8.8e-16 87.0 113 45.1
Lalb_Chr19g0135881 Lupinus albus HOM05D003439 ORTHO05D004062 8.8e-16 87.0 113 46.0
Oeu041919.3 Olea europaea HOM05D003439 ORTHO05D004062 1.1e-15 86.7 113 46.0
THA.LOC104800990 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 1.1e-15 86.7 109 45.0
A08p36540 Brassica napus HOM05D003439 ORTHO05D004062 1.5e-15 86.3 113 43.4
Migut.M00436 Erythranthe guttata HOM05D003439 ORTHO05D004062 1.5e-15 86.3 113 44.2
BcaB02g10470 Brassica carinata HOM05D003439 ORTHO05D004062 2.0e-15 85.9 113 43.4
BcaC07g36858 Brassica carinata HOM05D003439 ORTHO05D004062 2.0e-15 85.9 113 43.4
CARHR126230 Cardamine hirsuta HOM05D003439 ORTHO05D004062 2.0e-15 85.9 110 43.6
MELO3C019269.2 Cucumis melo HOM05D003439 ORTHO05D004062 2.0e-15 85.9 113 43.4
Glyma.06G305800 Glycine max HOM05D003439 ORTHO05D004062 2.0e-15 85.9 113 45.1
Sabra14G0116100 Salix brachista HOM05D003439 ORTHO05D004062 2.0e-15 85.9 113 46.9
TAR627G1083 Trochodendron aralioides HOM05D003439 ORTHO05D004062 2.0e-15 85.9 112 44.6
BraA09t42091Z Brassica rapa HOM05D003439 ORTHO05D004062 2.6e-15 85.5 113 43.4
Ca_29946_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 2.6e-15 85.5 113 45.1
Thhalv10007362m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 2.6e-15 85.5 113 42.5
Glyma.12G098800 Glycine max HOM05D003439 ORTHO05D004062 2.6e-15 85.5 113 45.1
Phvul.011G103600 Phaseolus vulgaris HOM05D003439 ORTHO05D004062 2.6e-15 85.5 113 43.4
Potri.002G229100 Populus trichocarpa HOM05D003439 ORTHO05D004062 2.6e-15 85.5 113 46.0
Sabra02G0175100 Salix brachista HOM05D003439 ORTHO05D004062 2.6e-15 85.5 113 46.0
Sp1g04030 Schrenkiella parvula HOM05D003439 ORTHO05D004062 2.6e-15 85.5 112 43.8
SpUn0024_0110 Schrenkiella parvula HOM05D003439 ORTHO05D004062 2.6e-15 85.5 112 43.8
Ca_26960_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 3.3e-15 85.1 113 45.1
Sc21g0001430 Simmondsia chinensis HOM05D003439 ORTHO05D004062 3.3e-15 85.1 112 45.5
A05p13180 Brassica napus HOM05D003439 ORTHO05D004062 4.4e-15 84.7 113 42.5
BraA05t20259Z Brassica rapa HOM05D003439 ORTHO05D004062 4.4e-15 84.7 113 42.5
CANSAT64G1323 Cannabis sativa HOM05D003439 ORTHO05D004062 4.4e-15 84.7 109 46.8
Cfa014399 Carpinus fangiana HOM05D003439 ORTHO05D004062 4.4e-15 84.7 113 44.2
Cc05_g04590 Coffea canephora HOM05D003439 ORTHO05D004062 4.4e-15 84.7 113 46.0
Haze_12863 Corylus avellana HOM05D003439 ORTHO05D004062 4.4e-15 84.7 113 44.2
ECA232G2998 Erigeron canadensis HOM05D003439 ORTHO05D004062 4.4e-15 84.7 113 45.1
Psat7g157240 Pisum sativum HOM05D003439 ORTHO05D004062 4.4e-15 84.7 113 44.2
TPR.G4641 Trifolium pratense HOM05D003439 ORTHO05D004062 4.4e-15 84.7 113 44.2
BcaC02g11324 Brassica carinata HOM05D003439 ORTHO05D004062 5.7e-15 84.3 113 42.5
C04p17240 Brassica napus HOM05D003439 ORTHO05D004062 5.7e-15 84.3 113 42.5
C08p01780 Brassica napus HOM05D003439 ORTHO05D004062 5.7e-15 84.3 113 42.5
BolC4t23276H Brassica oleracea HOM05D003439 ORTHO05D004062 5.7e-15 84.3 113 42.5
BolC8t46978H Brassica oleracea HOM05D003439 ORTHO05D004062 5.7e-15 84.3 113 42.5
Cpa.g.sc87.77 Carica papaya HOM05D003439 ORTHO05D004062 5.7e-15 84.3 113 44.2
QL08p033044 Quercus lobata HOM05D003439 ORTHO05D004062 5.7e-15 84.3 114 43.9
TAR629G2369 Trochodendron aralioides HOM05D003439 ORTHO05D004062 5.7e-15 84.3 110 46.4
Aqoxy2G04140 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 7.4e-15 84.0 112 42.9
Potri.014G153500 Populus trichocarpa HOM05D003439 ORTHO05D004062 7.4e-15 84.0 113 46.0
Aqoxy1G02139 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 9.7e-15 83.6 112 44.6
EL10Ac8g19506 Beta vulgaris HOM05D003439 ORTHO05D004062 9.7e-15 83.6 113 43.4
Peaxi162Scf00389g00814 Petunia axillaris HOM05D003439 ORTHO05D004062 1.3e-14 83.2 109 45.0
TWI36G1050 Tripterygium wilfordii HOM05D003439 ORTHO05D004062 1.3e-14 83.2 113 45.1
CSS0041453 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 1.7e-14 82.8 113 44.2
CAN.G80.46 Capsicum annuum HOM05D003439 ORTHO05D004062 1.7e-14 82.8 109 44.0
CARHR004640 Cardamine hirsuta HOM05D003439 ORTHO05D004062 1.7e-14 82.8 113 43.4
Solyc11g072460.2 Solanum lycopersicum HOM05D003439 ORTHO05D004062 1.7e-14 82.8 109 44.0
THA.LOC104816043 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 1.7e-14 82.8 109 43.1
Carub.0004s1376 Capsella rubella HOM05D003439 ORTHO05D004062 2.8e-14 82.0 107 43.0
Lj1C765G0 Lonicera japonica HOM05D003439 ORTHO05D004062 2.8e-14 82.0 134 40.3
Sopen11g030100 Solanum pennellii HOM05D003439 ORTHO05D004062 2.8e-14 82.0 109 44.0
AT2G32410 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 3.7e-14 81.6 110 41.8
CSS0047283 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 3.7e-14 81.6 113 43.4
CiPaw.03G159900 Carya illinoinensis HOM05D003439 ORTHO05D004062 3.7e-14 81.6 113 44.2
Nitab4.5_0001213g0070 Nicotiana tabacum HOM05D003439 ORTHO05D004062 3.7e-14 81.6 109 43.1
MBI02_g21885_MAGBIO Magnolia biondii HOM05D003439 ORTHO05D004062 4.8e-14 81.3 110 42.7
PGSC0003DMG400027403 Solanum tuberosum HOM05D003439 ORTHO05D004062 4.8e-14 81.3 109 43.1
Solyc12g005870.3 Solanum lycopersicum HOM05D003439 ORTHO05D004062 6.3e-14 80.9 109 42.2
Nn1g07136 Nelumbo nucifera HOM05D003439 ORTHO05D004062 8.2e-14 80.5 109 43.1
Sopen12g001820 Solanum pennellii HOM05D003439 ORTHO05D004062 8.2e-14 80.5 109 42.2
ATR0794G065 Amborella trichopoda HOM05D003439 ORTHO05D004062 1.1e-13 80.1 109 42.2
CAN.G553.19 Capsicum annuum HOM05D003439 ORTHO05D004062 1.4e-13 79.7 109 42.2
AUR62032477 Chenopodium quinoa HOM05D003439 ORTHO05D004062 1.8e-13 79.3 113 42.5
Nitab4.5_0006567g0010 Nicotiana tabacum HOM05D003439 ORTHO05D004062 1.8e-13 79.3 109 42.2
AL4G27800 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 2.4e-13 79.0 110 40.9
AUR62043065 Chenopodium quinoa HOM05D003439 ORTHO05D004062 3.1e-13 78.6 113 42.5
unitig_0.g729 Utricularia gibba HOM05D003439 ORTHO05D004062 3.1e-13 78.6 113 42.5
Actinidia27265 Actinidia chinensis HOM05D003439 ORTHO05D004062 4.1e-13 78.2 111 44.1
Atru.chr6.3185 Acer truncatum HOM05D003439 ORTHO05D004062 5.3e-13 77.8 110 43.6
CDE11G0886 Ceratophyllum demersum HOM05D003439 ORTHO05D004062 9.1e-13 77.0 113 38.9
DCAR_019274 Daucus carota HOM05D003439 ORTHO05D004062 9.1e-13 77.0 104 46.2
PSO541G1862 Papaver somniferum HOM05D003439 ORTHO05D004062 2.0e-12 75.9 110 41.8
PSO675G5573 Papaver somniferum HOM05D003439 ORTHO05D004062 2.0e-12 75.9 110 41.8
HPP92_015981 Vanilla planifolia HOM05D003439 ORTHO05D004062 2.0e-12 75.9 109 42.2
Hund02156 Selenicereus undatus HOM05D003439 ORTHO05D004062 7.7e-12 73.9 124 37.1
BolC8t52726H Brassica oleracea HOM05D003439 ORTHO05D004062 1.3e-11 73.2 104 42.3
SGA_v2.0_scaffold34G13839 Striga asiatica HOM05D003439 ORTHO05D004062 2.2e-11 72.4 103 41.7
Psat0s800g0080 Pisum sativum HOM05D003439 ORTHO05D004062 3.8e-11 71.6 102 42.2
Manes.12G066600 Manihot esculenta HOM05D003439 ORTHO05D004062 5.0e-11 71.2 113 41.6
Zm00001eb062550 Zea mays HOM05D003439 ORTHO05D004062 8.5e-11 70.5 109 38.5
Psat3g162480 Pisum sativum HOM05D003439 ORTHO05D004062 1.9e-10 69.3 102 41.2
Psat3g162520 Pisum sativum HOM05D003439 ORTHO05D004062 1.9e-10 69.3 102 41.2
Os03g0820100 Oryza sativa ssp. japonica HOM05D003439 ORTHO05D004062 2.5e-10 68.9 109 38.5
Zm00001eb211770 Zea mays HOM05D003439 ORTHO05D004062 3.2e-10 68.6 109 36.7
A09p67580 Brassica napus HOM05D003439 ORTHO05D004062 4.2e-10 68.2 126 34.9
SHI10354 Sapria himalayana HOM05D003439 ORTHO05D004062 9.4e-10 67.0 114 38.6
SEGI_10475 Sequoiadendron giganteum HOM05D003439 ORTHO05D004062 8.0e-09 63.9 40 75.0
RcHm_v2.0_Chr3g0476741 Rosa chinensis HOM05D003439 ORTHO05D025162 1.0e-08 63.5 35 94.3
COL.COLO4_19119 Corchorus olitorius HOM05D003439 ORTHO05D025162 1.4e-08 63.2 34 82.4
SMO140G0107 Selaginella moellendorffii HOM05D003439 ORTHO05D004062 2.3e-08 62.4 109 33.9
C08p51960 Brassica napus HOM05D003439 ORTHO05D004062 3.0e-08 62.0 104 39.4
BcaC07g42149 Brassica carinata HOM05D003439 ORTHO05D004062 2.6e-07 58.9 104 39.4
Psat1g032280 Pisum sativum HOM05D003439 ORTHO05D004062 4.4e-07 58.2 34 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3702 Anthoceros agrestis HOM05D003439 ORTHO05D004062 5.7e-07 57.8 109 32.1
Mapoly0005s0094 Marchantia polymorpha HOM05D003439 ORTHO05D004062 2.8e-06 55.5 96 37.5


User provided reference genes

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