Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 3.2e-237 824.7 413 100.0
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 9.4e-149 530.8 411 69.3
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 8.2e-145 517.7 411 68.4
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.0e-86 324.7 409 48.4
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 1.5e-85 320.9 207 77.3
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 2.9e-81 306.6 414 44.0
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 6.4e-81 305.4 418 43.5
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.4e-80 304.3 394 44.9
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.3e-78 297.0 400 45.2
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 9.6e-77 291.6 461 41.0
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.8e-76 289.3 388 44.1
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 8.1e-76 288.5 399 43.1
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 5.3e-75 285.8 426 42.5
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 9.3e-72 275.0 397 44.1
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 4.6e-71 272.7 410 42.0
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.5e-69 267.7 396 41.2
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 5.6e-69 265.8 396 42.2
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 5.6e-69 265.8 412 42.0
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 9.6e-69 265.0 396 41.9
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 2.8e-68 263.5 393 39.9
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.8e-68 263.5 396 41.2
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 5.3e-67 259.2 396 41.4
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.2e-66 258.1 397 40.3
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.5e-66 257.7 396 41.2
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.5e-66 257.7 396 41.2
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.0e-66 257.3 434 40.3
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.6e-66 256.9 396 41.2
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 3.4e-66 256.5 328 52.4
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 5.8e-66 255.8 424 38.7
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.5e-65 252.3 438 39.0
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 6.5e-65 252.3 401 42.4
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 1.1e-64 251.5 474 36.9
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 4.2e-64 249.6 429 38.7
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.6e-63 247.7 429 40.6
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.1e-63 247.3 507 36.3
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 4.6e-63 246.1 384 40.6
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.3e-62 243.8 434 38.7
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.9e-62 243.0 476 37.2
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.7e-62 242.3 464 36.9
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.5e-61 241.1 466 38.2
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-61 241.1 465 37.0
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.9e-61 240.7 385 40.8
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.9e-61 240.7 482 35.9
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 4.3e-61 239.6 489 36.0
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 4.3e-61 239.6 482 36.3
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.4e-61 238.8 489 35.4
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.1e-60 237.3 454 35.0
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.7e-60 236.5 412 37.9
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 6.3e-60 235.7 482 36.3
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.8e-59 234.2 476 34.2
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.8e-59 234.2 459 36.2
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.1e-59 233.4 483 36.0
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 9.0e-59 231.9 448 35.7
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 7.6e-58 228.8 453 36.0
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-57 228.0 411 38.0
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.2e-57 227.3 460 35.9
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.9e-57 226.9 490 34.9
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.9e-57 226.9 379 40.6
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 5.0e-57 226.1 451 36.4
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.1e-56 224.9 460 35.9
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.1e-56 224.9 496 34.5
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 5.5e-56 222.6 426 37.6
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.2e-55 221.5 351 42.7
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.2e-55 221.5 436 37.4
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.2e-55 221.5 464 34.1
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.6e-55 221.1 424 37.7
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 6.1e-55 219.2 412 37.1
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 2.3e-54 217.2 478 33.3
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.0e-54 216.9 346 41.3
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 3.0e-54 216.9 350 42.0
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 8.7e-54 215.3 489 31.7
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.1e-53 214.9 472 34.5
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 3.3e-53 213.4 442 36.7
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 3.3e-53 213.4 446 35.4
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 3.3e-53 213.4 446 35.4
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 5.7e-53 212.6 410 35.1
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.6e-52 211.1 479 34.2
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.6e-52 211.1 313 43.1
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.8e-52 209.5 491 31.4
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 8.2e-52 208.8 497 34.8
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.1e-51 208.4 369 40.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 3.1e-51 206.8 463 35.6
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 4.1e-51 206.5 497 33.6
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.3e-51 206.1 307 41.7
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 6.9e-51 205.7 455 34.3
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.2e-50 204.9 485 33.4
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.9e-50 202.6 305 42.0
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.7e-49 201.1 389 34.7
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 3.8e-49 199.9 455 35.4
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.1e-48 198.4 420 34.8
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.5e-48 197.2 439 35.5
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 5.5e-48 196.1 406 36.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 5.5e-48 196.1 448 34.6
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.2e-47 194.9 458 35.2
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.2e-47 194.9 355 38.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.4e-46 191.4 475 33.9
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 8.8e-46 188.7 326 39.6
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.2e-44 182.2 376 35.9
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.4e-43 180.6 322 39.8
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.3e-43 179.5 281 40.6
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.5e-42 177.9 326 37.7
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.0e-41 175.3 324 37.7
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.0e-41 175.3 337 39.8
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.2e-41 174.1 338 36.7
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 3.8e-41 173.3 464 33.6
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.5e-40 170.6 367 34.6
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.7e-39 167.2 224 45.5
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.7e-39 166.4 415 31.1
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 7.9e-39 165.6 319 36.4
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.8e-36 157.1 365 34.2
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.8e-35 154.5 439 32.1
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.0e-35 152.5 312 36.5
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.0e-34 151.0 163 48.5
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.6e-34 150.6 312 36.9
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.5e-34 150.2 332 35.2
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.0e-33 148.7 338 34.3
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.9e-32 144.4 421 30.6
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-31 141.4 151 55.0
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-31 141.0 224 42.4
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 3.6e-31 140.2 159 49.7
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 4.7e-31 139.8 151 54.3
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.8e-28 130.6 239 38.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.7e-28 130.2 137 47.4
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 2.4e-27 127.5 136 45.6
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.5e-26 123.6 124 50.0
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.0e-25 122.1 97 56.7
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-24 117.5 307 30.6
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 4.2e-24 116.7 140 46.4
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 5.5e-24 116.3 263 36.1
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 5.5e-24 116.3 263 36.1
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.6e-23 114.8 208 37.0
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 4.0e-22 110.2 160 39.4
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.5e-21 108.2 247 33.2
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.6e-21 107.5 126 46.8
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.7e-20 103.6 151 42.4
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.1e-19 102.1 380 26.6
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 7.7e-18 95.9 144 41.7
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 6.5e-17 92.8 180 35.0
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.3e-12 78.6 111 36.9
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.1e-11 75.5 127 41.7
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.2e-10 72.0 116 37.1
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 2.9e-09 67.4 229 31.4
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 3.8e-09 67.0 94 42.6
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 6.1e-07 59.7 58 55.2


User provided reference genes

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