Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0496141 Rosa chinensis HOM05D003433 ORTHO05D003921 2.2e-24 114.8 57 100.0
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 2.8e-11 71.2 35 97.1
FvH4_3g08340 Fragaria vesca HOM05D003433 ORTHO05D003921 6.9e-10 66.6 35 88.6
FAN11G2340 Fragaria x ananassa HOM05D003433 ORTHO05D003921 6.9e-10 66.6 35 88.6
FAN16G1189 Fragaria x ananassa HOM05D003433 ORTHO05D003921 6.9e-10 66.6 35 88.6
FAN21G1348 Fragaria x ananassa HOM05D000167 ORTHO05D000640 6.9e-10 66.6 35 88.6
FAN25G2053 Fragaria x ananassa HOM05D003433 ORTHO05D003921 6.9e-10 66.6 35 88.6
Prupe.4G054900 Prunus persica HOM05D003433 ORTHO05D003921 1.3e-08 62.4 35 82.9
ClCG01G023390 Citrullus lanatus HOM05D003433 ORTHO05D003921 2.9e-08 61.2 40 70.0
CsaV3_6G050520 Cucumis sativus L. HOM05D003433 ORTHO05D003921 2.9e-08 61.2 40 70.0
Atru.chr10.1756 Acer truncatum HOM05D003433 ORTHO05D003921 3.8e-08 60.8 40 70.0
MD10G1286800 Malus domestica HOM05D003433 ORTHO05D003921 3.8e-08 60.8 35 80.0
QL05p043563 Quercus lobata HOM05D003433 ORTHO05D003921 5.0e-08 60.5 33 81.8
Sed0002150 Sechium edule HOM05D003433 ORTHO05D003921 1.1e-07 59.3 40 67.5
Psat1g201440 Pisum sativum HOM05D003433 ORTHO05D003921 1.4e-07 58.9 33 78.8
TPR.G11762 Trifolium pratense HOM05D003433 ORTHO05D003921 1.4e-07 58.9 33 78.8
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 3.2e-07 57.8 35 74.3
arahy.Tifrunner.gnm1.ann1.6T1YLT Arachis hypogaea HOM05D003433 ORTHO05D003921 4.2e-07 57.4 33 78.8
arahy.Tifrunner.gnm1.ann1.ICFM41 Arachis hypogaea HOM05D003433 ORTHO05D003921 4.2e-07 57.4 33 78.8
MD05G1307600 Malus domestica HOM05D003433 ORTHO05D003921 4.2e-07 57.4 35 74.3
Nitab4.5_0000516g0030 Nicotiana tabacum HOM05D003433 ORTHO05D003921 4.2e-07 57.4 40 62.5
Nitab4.5_0001375g0090 Nicotiana tabacum HOM05D003433 ORTHO05D003921 4.2e-07 57.4 40 62.5
PGR042G3683 Punica granatum HOM05D003433 ORTHO05D003921 4.2e-07 57.4 35 71.4
Phvul.006G180300 Phaseolus vulgaris HOM05D003433 ORTHO05D003921 5.5e-07 57.0 35 74.3
CANSAT35G0946 Cannabis sativa HOM05D003433 ORTHO05D003921 7.2e-07 56.6 35 71.4
Ciclev10016983m.g Citrus clementina HOM05D003433 ORTHO05D003921 7.2e-07 56.6 35 71.4
Lj4g0012011 Lotus japonicus HOM05D003433 ORTHO05D003921 9.4e-07 56.2 35 71.4
Nn1g04279 Nelumbo nucifera HOM05D003433 ORTHO05D003921 9.4e-07 56.2 35 71.4
Peaxi162Scf00042g00059 Petunia axillaris HOM05D003433 ORTHO05D003921 9.4e-07 56.2 35 71.4
Lalb_Chr09g0327891 Lupinus albus HOM05D003433 ORTHO05D003921 1.2e-06 55.8 33 75.8
Ca_00401_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 1.6e-06 55.5 33 72.7
ECA234G4324 Erigeron canadensis HOM05D003433 ORTHO05D003921 1.6e-06 55.5 35 68.6
HanXRQChr16g0518571 Helianthus annuus HOM05D003433 ORTHO05D003921 1.6e-06 55.5 35 68.6
HanXRQChr17g0561771 Helianthus annuus HOM05D003433 ORTHO05D003921 1.6e-06 55.5 35 68.6
Lsat_1_v5_gn_4_51640 Lactuca sativa HOM05D003433 ORTHO05D003921 1.6e-06 55.5 35 68.6
Medtr2g014950 Medicago truncatula HOM05D003433 ORTHO05D003921 1.6e-06 55.5 33 69.7
SalBow7G0821 Salvia bowleyana HOM05D003433 ORTHO05D003921 1.6e-06 55.5 35 68.6
SalBow7G1387 Salvia bowleyana HOM05D003433 ORTHO05D003921 1.6e-06 55.5 35 68.6
Sed0018895 Sechium edule HOM05D003433 ORTHO05D003921 1.6e-06 55.5 40 65.0
Glyma.10G069300 Glycine max HOM05D003433 ORTHO05D003921 2.1e-06 55.1 33 72.7
Glyma.13G152372 Glycine max HOM05D003433 ORTHO05D003921 2.1e-06 55.1 33 72.7
Lalb_Chr15g0089601 Lupinus albus HOM05D003433 ORTHO05D003921 2.1e-06 55.1 33 72.7
Lalb_Chr18g0059311 Lupinus albus HOM05D003433 ORTHO05D003921 2.1e-06 55.1 33 72.7
Lalb_Chr20g0121441 Lupinus albus HOM05D003433 ORTHO05D003921 2.1e-06 55.1 33 72.7
Manes.16G033800 Manihot esculenta HOM05D003433 ORTHO05D003921 2.1e-06 55.1 35 68.6
Duzib160G0603 Durio zibethinus HOM05D003433 ORTHO05D003921 2.7e-06 54.7 35 68.6
Psat7g117240 Pisum sativum HOM05D003433 ORTHO05D003921 2.7e-06 54.7 33 72.7
Potri.004G051100 Populus trichocarpa HOM05D003433 ORTHO05D003921 2.7e-06 54.7 35 68.6
Potri.011G060800 Populus trichocarpa HOM05D003433 ORTHO05D003921 2.7e-06 54.7 35 68.6
Sabra11G0041600 Salix brachista HOM05D003433 ORTHO05D003921 2.7e-06 54.7 35 68.6
CSS0002242 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 3.6e-06 54.3 36 63.9
CSS0048128 Camellia sinensis var. sinensis HOM05D003433 ORTHO05D003921 3.6e-06 54.3 36 63.9
GSVIVG01021141001 Vitis vinifera HOM05D003433 ORTHO05D003921 3.6e-06 54.3 35 65.7
Ca_18614_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 4.7e-06 53.9 33 69.7
Ca_30604_v3 Cicer arietinum L. HOM05D003433 ORTHO05D003921 4.7e-06 53.9 33 69.7
Lj6g0016596 Lotus japonicus HOM05D003433 ORTHO05D003921 4.7e-06 53.9 33 72.7
Sabra04G0032200 Salix brachista HOM05D003433 ORTHO05D003921 4.7e-06 53.9 56 48.2
Sc05g0007340 Simmondsia chinensis HOM05D003433 ORTHO05D003921 4.7e-06 53.9 35 65.7
Thecc.06G178400 Theobroma cacao HOM05D003433 ORTHO05D003921 4.7e-06 53.9 35 68.6
CiPaw.11G165900 Carya illinoinensis HOM05D003433 ORTHO05D003921 6.1e-06 53.5 35 62.9
DCAR_006581 Daucus carota HOM05D003433 ORTHO05D003921 6.1e-06 53.5 35 62.9
Rhsim02G0137600 Rhododendron simsii HOM05D003433 ORTHO05D003921 6.1e-06 53.5 35 65.7
SGA_v2.0_scaffold16G07656 Striga asiatica HOM05D003433 ORTHO05D003921 6.1e-06 53.5 35 65.7
Thecc.07G100500 Theobroma cacao HOM05D003433 ORTHO05D003921 6.1e-06 53.5 35 68.6
TAR487G0004 Trochodendron aralioides HOM05D003433 ORTHO05D003921 6.1e-06 53.5 35 65.7
vmacro15947 Vaccinium macrocarpon HOM05D003433 ORTHO05D003921 6.1e-06 53.5 35 65.7
Aqoxy1G02243 Aquilegia oxysepala HOM05D003433 ORTHO05D003921 7.9e-06 53.1 33 69.7
Duzib235G0342 Durio zibethinus HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
Migut.M01089 Erythranthe guttata HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
Gohir.A10G028800 Gossypium hirsutum HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
Gohir.D10G029200 Gossypium hirsutum HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
Gorai.011G031100 Gossypium raimondii HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
Manes.03G104100 Manihot esculenta HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
Sc17g0005850 Simmondsia chinensis HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
Solyc02g077410.3 Solanum lycopersicum HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
Sopen02g022310 Solanum pennellii HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7
PGSC0003DMG400010727 Solanum tuberosum HOM05D003433 ORTHO05D003921 7.9e-06 53.1 35 65.7


User provided reference genes

Program Settings