Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0495401 Rosa chinensis HOM05D002352 ORTHO05D341088 5.3e-19 96.7 48 100.0
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.5e-08 61.2 37 81.1
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 5.5e-08 60.1 31 93.5
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 9.3e-08 59.3 37 75.7
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 9.3e-08 59.3 32 84.4
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 9.3e-08 59.3 32 84.4
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.2e-07 58.9 31 90.3
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 87.1
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 87.1
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 90.3
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 90.3
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 87.1
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 87.1
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 90.3
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 90.3
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 87.1
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 2.1e-07 58.2 31 87.1
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.7e-07 57.8 31 90.3
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 2.7e-07 57.8 31 87.1
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 2.7e-07 57.8 31 87.1
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 3.5e-07 57.4 32 81.2
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 3.5e-07 57.4 31 87.1
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 3.5e-07 57.4 31 87.1
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 3.5e-07 57.4 31 87.1
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 4.6e-07 57.0 31 83.9
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.6e-07 57.0 31 87.1
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 4.6e-07 57.0 31 83.9
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 4.6e-07 57.0 31 90.3
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 4.6e-07 57.0 31 87.1
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 6.0e-07 56.6 32 78.1
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 6.0e-07 56.6 31 83.9
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 6.0e-07 56.6 31 87.1
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 6.0e-07 56.6 31 83.9
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 7.9e-07 56.2 31 83.9
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 7.9e-07 56.2 31 87.1
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 7.9e-07 56.2 31 83.9
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 7.9e-07 56.2 31 83.9
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 7.9e-07 56.2 31 83.9
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 7.9e-07 56.2 31 83.9
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 7.9e-07 56.2 31 83.9
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.0e-06 55.8 31 83.9
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.0e-06 55.8 31 80.6
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.3e-06 55.5 31 83.9
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.3e-06 55.5 31 83.9
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.3e-06 55.5 31 83.9
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.3e-06 55.5 31 87.1
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 87.1
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 80.6
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 83.9
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 83.9
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 83.9
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 83.9
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 83.9
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 87.1
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 87.1
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 87.1
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 83.9
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.8e-06 55.1 31 83.9
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 2.3e-06 54.7 31 80.6
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.3e-06 54.7 31 80.6
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 3.0e-06 54.3 31 80.6
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.0e-06 54.3 31 83.9
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.0e-06 54.3 31 83.9
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 3.0e-06 54.3 31 83.9
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 3.0e-06 54.3 31 80.6
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.0e-06 54.3 31 83.9
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 3.9e-06 53.9 31 83.9
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 5.1e-06 53.5 31 80.6
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 5.1e-06 53.5 31 83.9
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 6.7e-06 53.1 31 80.6
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 6.7e-06 53.1 31 74.2
Lsat_1_v5_gn_7_13280 Lactuca sativa HOM05D002352 ORTHO05D000385 6.7e-06 53.1 32 78.1
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 6.7e-06 53.1 31 83.9
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 8.7e-06 52.8 31 83.9
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 8.7e-06 52.8 31 77.4


User provided reference genes

Program Settings